Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06446 and MPMX19_06447 are separated by 241 nucleotides MPMX19_06447 and MPMX19_06448 are separated by 34 nucleotides MPMX19_06448 and MPMX19_06449 are separated by 357 nucleotides MPMX19_06449 and MPMX19_06450 overlap by 1 nucleotides
MPMX19_06446: MPMX19_06446 - hypothetical protein, at 220,287 to 220,640
_06446
MPMX19_06447: MPMX19_06447 - hypothetical protein, at 220,882 to 221,283
_06447
MPMX19_06448: MPMX19_06448 - hypothetical protein, at 221,318 to 222,112
_06448
MPMX19_06449: MPMX19_06449 - hypothetical protein, at 222,470 to 222,757
_06449
MPMX19_06450: MPMX19_06450 - Fe(2+) transporter FeoB, at 222,757 to 224,862
_06450
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.889 kb on + strand, within MPMX19_06448 at 221.988 kb on + strand, within MPMX19_06448 at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.163 kb on + strand at 222.164 kb on - strand at 222.164 kb on - strand at 222.238 kb on + strand at 222.238 kb on + strand at 222.239 kb on - strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.301 kb on + strand at 222.302 kb on - strand at 222.303 kb on + strand at 222.303 kb on + strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.304 kb on - strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.335 kb on + strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.336 kb on - strand at 222.447 kb on + strand at 222.447 kb on + strand at 222.448 kb on - strand at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.641 kb on + strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.642 kb on - strand, within MPMX19_06449 at 222.736 kb on + strand at 222.868 kb on + strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.869 kb on - strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 221,889 + MPMX19_06448 0.72 +0.1 221,889 + MPMX19_06448 0.72 -0.9 221,889 + MPMX19_06448 0.72 -0.7 221,889 + MPMX19_06448 0.72 -0.1 221,889 + MPMX19_06448 0.72 -1.8 221,889 + MPMX19_06448 0.72 -0.8 221,889 + MPMX19_06448 0.72 -0.5 221,889 + MPMX19_06448 0.72 +0.5 221,889 + MPMX19_06448 0.72 -2.0 221,889 + MPMX19_06448 0.72 -2.0 221,889 + MPMX19_06448 0.72 -2.1 221,889 + MPMX19_06448 0.72 -1.4 221,889 + MPMX19_06448 0.72 -0.8 221,889 + MPMX19_06448 0.72 -1.1 221,889 + MPMX19_06448 0.72 -0.3 221,988 + MPMX19_06448 0.84 -1.0 222,163 + +0.8 222,163 + +1.3 222,163 + +0.3 222,163 + -2.1 222,164 - +0.1 222,164 - +1.1 222,238 + +0.5 222,238 + +0.2 222,239 - -0.4 222,301 + -0.8 222,301 + +0.3 222,301 + +0.5 222,302 - +0.6 222,303 + -1.7 222,303 + -0.1 222,304 - -1.0 222,304 - +0.9 222,304 - -1.1 222,335 + -0.9 222,335 + +0.3 222,335 + +0.5 222,335 + +0.9 222,336 - -1.0 222,336 - -0.7 222,336 - +0.1 222,447 + +1.9 222,447 + -1.7 222,448 - +0.9 222,641 + MPMX19_06449 0.59 -0.1 222,641 + MPMX19_06449 0.59 -0.1 222,641 + MPMX19_06449 0.59 -0.8 222,641 + MPMX19_06449 0.59 -2.0 222,641 + MPMX19_06449 0.59 -1.0 222,641 + MPMX19_06449 0.59 +0.4 222,642 - MPMX19_06449 0.60 -1.1 222,642 - MPMX19_06449 0.60 -0.9 222,736 + -1.1 222,868 + -1.1 222,869 - +0.5 222,869 - -0.3 222,869 - -0.4 222,955 + -0.3 222,955 + +0.7 222,955 + -0.7 222,956 - -0.7 222,956 - -0.4 222,956 - +0.5 222,956 - +0.1 222,956 - -0.1 222,956 - -1.6 222,956 - -0.7
Or see this region's nucleotide sequence