Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06422 and MPMX19_06423 are separated by 265 nucleotides MPMX19_06423 and MPMX19_06424 are separated by 19 nucleotides MPMX19_06424 and MPMX19_06425 are separated by 184 nucleotides
MPMX19_06422: MPMX19_06422 - hypothetical protein, at 194,444 to 194,911
_06422
MPMX19_06423: MPMX19_06423 - hypothetical protein, at 195,177 to 195,776
_06423
MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067
_06424
MPMX19_06425: MPMX19_06425 - hypothetical protein, at 197,252 to 197,722
_06425
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.822 kb on + strand, within MPMX19_06422 at 194.822 kb on + strand, within MPMX19_06422 at 194.823 kb on - strand, within MPMX19_06422 at 194.823 kb on - strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.847 kb on + strand, within MPMX19_06422 at 194.848 kb on - strand, within MPMX19_06422 at 194.848 kb on - strand, within MPMX19_06422 at 194.992 kb on - strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.105 kb on + strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.106 kb on - strand at 195.143 kb on - strand at 195.341 kb on + strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.342 kb on - strand, within MPMX19_06423 at 195.365 kb on + strand, within MPMX19_06423 at 195.439 kb on + strand, within MPMX19_06423 at 195.439 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.519 kb on + strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.520 kb on - strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.521 kb on + strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.522 kb on - strand, within MPMX19_06423 at 195.568 kb on + strand, within MPMX19_06423 at 195.568 kb on + strand, within MPMX19_06423 at 195.569 kb on - strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.661 kb on + strand, within MPMX19_06423 at 195.885 kb on - strand at 195.893 kb on + strand at 195.894 kb on - strand at 196.049 kb on + strand, within MPMX19_06424 at 196.050 kb on - strand, within MPMX19_06424 at 196.050 kb on - strand, within MPMX19_06424 at 196.211 kb on + strand, within MPMX19_06424 at 196.211 kb on + strand, within MPMX19_06424 at 196.212 kb on - strand, within MPMX19_06424 at 196.212 kb on - strand, within MPMX19_06424 at 196.212 kb on - strand, within MPMX19_06424 at 196.250 kb on + strand, within MPMX19_06424 at 196.250 kb on + strand, within MPMX19_06424 at 196.250 kb on + strand, within MPMX19_06424 at 196.292 kb on + strand, within MPMX19_06424 at 196.496 kb on + strand, within MPMX19_06424 at 196.576 kb on + strand, within MPMX19_06424 at 196.577 kb on - strand, within MPMX19_06424 at 196.577 kb on - strand, within MPMX19_06424 at 196.586 kb on + strand, within MPMX19_06424 at 196.587 kb on - strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.640 kb on + strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.641 kb on - strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.787 kb on + strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.788 kb on - strand, within MPMX19_06424 at 196.901 kb on + strand, within MPMX19_06424 at 196.901 kb on + strand, within MPMX19_06424 at 196.920 kb on + strand, within MPMX19_06424 at 196.921 kb on - strand, within MPMX19_06424 at 197.010 kb on - strand at 197.010 kb on - strand at 197.130 kb on + strand at 197.130 kb on + strand at 197.164 kb on + strand at 197.164 kb on + strand at 197.164 kb on + strand at 197.165 kb on - strand at 197.165 kb on - strand at 197.165 kb on - strand at 197.208 kb on + strand at 197.208 kb on + strand at 197.208 kb on + strand at 197.209 kb on - strand at 197.209 kb on - strand at 197.209 kb on - strand at 197.219 kb on + strand at 197.219 kb on + strand at 197.219 kb on + strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.220 kb on - strand at 197.793 kb on - strand at 197.793 kb on - strand at 197.793 kb on - strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.827 kb on - strand at 197.841 kb on - strand at 197.841 kb on - strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.003 kb on + strand at 198.004 kb on - strand at 198.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 194,822 + MPMX19_06422 0.81 -0.2 194,822 + MPMX19_06422 0.81 -1.0 194,823 - MPMX19_06422 0.81 -0.2 194,823 - MPMX19_06422 0.81 +1.1 194,847 + MPMX19_06422 0.86 -0.7 194,847 + MPMX19_06422 0.86 -0.2 194,847 + MPMX19_06422 0.86 -0.9 194,847 + MPMX19_06422 0.86 -0.7 194,847 + MPMX19_06422 0.86 -1.7 194,847 + MPMX19_06422 0.86 -0.5 194,848 - MPMX19_06422 0.86 -1.8 194,848 - MPMX19_06422 0.86 -0.7 194,992 - -2.0 195,105 + -1.1 195,105 + -0.2 195,105 + -0.5 195,105 + -1.1 195,105 + -0.9 195,106 - -0.5 195,106 - -0.4 195,106 - -1.6 195,106 - +0.5 195,106 - -0.4 195,106 - -0.2 195,106 - +0.3 195,106 - -0.8 195,106 - -0.2 195,106 - -0.9 195,106 - -0.4 195,143 - -0.1 195,341 + MPMX19_06423 0.27 +0.5 195,342 - MPMX19_06423 0.28 -0.3 195,342 - MPMX19_06423 0.28 +1.9 195,342 - MPMX19_06423 0.28 -1.3 195,342 - MPMX19_06423 0.28 +0.1 195,365 + MPMX19_06423 0.31 +0.4 195,439 + MPMX19_06423 0.44 -1.9 195,439 + MPMX19_06423 0.44 +1.2 195,519 + MPMX19_06423 0.57 +0.1 195,519 + MPMX19_06423 0.57 +0.3 195,519 + MPMX19_06423 0.57 +0.5 195,519 + MPMX19_06423 0.57 -1.8 195,519 + MPMX19_06423 0.57 +0.1 195,519 + MPMX19_06423 0.57 -0.4 195,519 + MPMX19_06423 0.57 -0.3 195,519 + MPMX19_06423 0.57 -0.7 195,519 + MPMX19_06423 0.57 -0.5 195,520 - MPMX19_06423 0.57 -1.4 195,520 - MPMX19_06423 0.57 -0.9 195,520 - MPMX19_06423 0.57 +0.5 195,520 - MPMX19_06423 0.57 -1.9 195,520 - MPMX19_06423 0.57 -1.5 195,520 - MPMX19_06423 0.57 +0.1 195,520 - MPMX19_06423 0.57 +0.2 195,520 - MPMX19_06423 0.57 -0.3 195,520 - MPMX19_06423 0.57 -0.4 195,520 - MPMX19_06423 0.57 +0.8 195,520 - MPMX19_06423 0.57 -0.3 195,520 - MPMX19_06423 0.57 -1.1 195,520 - MPMX19_06423 0.57 -1.0 195,521 + MPMX19_06423 0.57 -0.9 195,521 + MPMX19_06423 0.57 +0.2 195,521 + MPMX19_06423 0.57 -0.3 195,522 - MPMX19_06423 0.57 +0.0 195,522 - MPMX19_06423 0.57 -1.4 195,522 - MPMX19_06423 0.57 -0.4 195,522 - MPMX19_06423 0.57 -1.3 195,568 + MPMX19_06423 0.65 -1.1 195,568 + MPMX19_06423 0.65 -0.8 195,569 - MPMX19_06423 0.65 -1.2 195,661 + MPMX19_06423 0.81 +0.7 195,661 + MPMX19_06423 0.81 -2.4 195,661 + MPMX19_06423 0.81 -0.8 195,661 + MPMX19_06423 0.81 -0.7 195,661 + MPMX19_06423 0.81 +0.9 195,885 - +0.8 195,893 + -0.1 195,894 - +0.3 196,049 + MPMX19_06424 0.20 -1.2 196,050 - MPMX19_06424 0.20 -0.6 196,050 - MPMX19_06424 0.20 -1.1 196,211 + MPMX19_06424 0.33 -1.1 196,211 + MPMX19_06424 0.33 -1.4 196,212 - MPMX19_06424 0.33 +0.8 196,212 - MPMX19_06424 0.33 -0.6 196,212 - MPMX19_06424 0.33 -0.7 196,250 + MPMX19_06424 0.36 +0.1 196,250 + MPMX19_06424 0.36 -0.4 196,250 + MPMX19_06424 0.36 -0.9 196,292 + MPMX19_06424 0.39 +0.6 196,496 + MPMX19_06424 0.55 +0.3 196,576 + MPMX19_06424 0.61 +0.2 196,577 - MPMX19_06424 0.61 -0.2 196,577 - MPMX19_06424 0.61 -1.7 196,586 + MPMX19_06424 0.62 +1.9 196,587 - MPMX19_06424 0.62 -0.1 196,640 + MPMX19_06424 0.66 -0.2 196,640 + MPMX19_06424 0.66 -0.2 196,640 + MPMX19_06424 0.66 -1.4 196,640 + MPMX19_06424 0.66 -0.9 196,640 + MPMX19_06424 0.66 -1.0 196,640 + MPMX19_06424 0.66 -1.3 196,640 + MPMX19_06424 0.66 +0.9 196,641 - MPMX19_06424 0.66 -0.7 196,641 - MPMX19_06424 0.66 +1.5 196,641 - MPMX19_06424 0.66 -0.1 196,641 - MPMX19_06424 0.66 -2.2 196,787 + MPMX19_06424 0.78 -0.5 196,787 + MPMX19_06424 0.78 -0.2 196,787 + MPMX19_06424 0.78 +1.7 196,787 + MPMX19_06424 0.78 -0.8 196,787 + MPMX19_06424 0.78 +0.2 196,787 + MPMX19_06424 0.78 -2.8 196,787 + MPMX19_06424 0.78 -0.9 196,787 + MPMX19_06424 0.78 -0.5 196,787 + MPMX19_06424 0.78 +1.3 196,787 + MPMX19_06424 0.78 +0.1 196,787 + MPMX19_06424 0.78 -0.9 196,787 + MPMX19_06424 0.78 -0.1 196,787 + MPMX19_06424 0.78 +0.9 196,787 + MPMX19_06424 0.78 -0.5 196,787 + MPMX19_06424 0.78 -1.2 196,787 + MPMX19_06424 0.78 +0.9 196,787 + MPMX19_06424 0.78 -1.1 196,788 - MPMX19_06424 0.78 -0.9 196,788 - MPMX19_06424 0.78 -0.3 196,788 - MPMX19_06424 0.78 -0.4 196,788 - MPMX19_06424 0.78 +0.3 196,788 - MPMX19_06424 0.78 -1.1 196,788 - MPMX19_06424 0.78 +0.6 196,788 - MPMX19_06424 0.78 +0.0 196,788 - MPMX19_06424 0.78 -0.2 196,788 - MPMX19_06424 0.78 +0.6 196,901 + MPMX19_06424 0.87 -1.6 196,901 + MPMX19_06424 0.87 +0.8 196,920 + MPMX19_06424 0.88 -1.2 196,921 - MPMX19_06424 0.88 -1.5 197,010 - -0.4 197,010 - -2.8 197,130 + -0.1 197,130 + -1.3 197,164 + +1.3 197,164 + +0.3 197,164 + -0.7 197,165 - -0.6 197,165 - -0.2 197,165 - +0.5 197,208 + +0.3 197,208 + -1.5 197,208 + -1.7 197,209 - +0.6 197,209 - -1.0 197,209 - -0.4 197,219 + -1.1 197,219 + -1.5 197,219 + +0.4 197,220 - +0.5 197,220 - -0.3 197,220 - +1.1 197,220 - -1.5 197,220 - -1.1 197,220 - +0.9 197,793 - -0.4 197,793 - -1.3 197,793 - +0.3 197,826 + -0.2 197,826 + +0.3 197,827 - -0.6 197,841 - -0.6 197,841 - -0.7 198,003 + -0.1 198,003 + -1.9 198,003 + +0.3 198,003 + -1.1 198,004 - +0.9 198,004 - -2.3
Or see this region's nucleotide sequence