Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06422

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06422 and MPMX19_06423 are separated by 265 nucleotidesMPMX19_06423 and MPMX19_06424 are separated by 19 nucleotides MPMX19_06422: MPMX19_06422 - hypothetical protein, at 194,444 to 194,911 _06422 MPMX19_06423: MPMX19_06423 - hypothetical protein, at 195,177 to 195,776 _06423 MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067 _06424 Position (kb) 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 193.449 kb on + strandat 193.449 kb on + strandat 193.449 kb on + strandat 193.458 kb on + strandat 193.459 kb on - strandat 193.459 kb on - strandat 193.568 kb on - strandat 193.571 kb on + strandat 193.571 kb on + strandat 193.571 kb on + strandat 193.571 kb on + strandat 193.571 kb on + strandat 193.571 kb on + strandat 193.572 kb on - strandat 193.603 kb on + strandat 193.603 kb on + strandat 193.603 kb on + strandat 193.603 kb on + strandat 193.603 kb on + strandat 193.603 kb on + strandat 193.604 kb on - strandat 193.604 kb on - strandat 193.604 kb on - strandat 193.604 kb on - strandat 193.604 kb on - strandat 193.614 kb on + strandat 193.615 kb on - strandat 193.625 kb on - strandat 193.746 kb on + strandat 193.763 kb on + strandat 193.764 kb on - strandat 193.764 kb on - strandat 193.775 kb on + strandat 193.776 kb on - strandat 193.992 kb on + strandat 193.995 kb on + strandat 194.043 kb on + strandat 194.043 kb on + strandat 194.044 kb on - strandat 194.044 kb on - strandat 194.044 kb on - strandat 194.046 kb on + strandat 194.046 kb on + strandat 194.099 kb on - strandat 194.099 kb on - strandat 194.119 kb on - strandat 194.119 kb on - strandat 194.159 kb on + strandat 194.159 kb on + strandat 194.160 kb on - strandat 194.160 kb on - strandat 194.160 kb on - strandat 194.160 kb on - strandat 194.171 kb on - strandat 194.235 kb on + strandat 194.280 kb on + strandat 194.343 kb on - strandat 194.343 kb on - strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.531 kb on - strand, within MPMX19_06422at 194.556 kb on + strand, within MPMX19_06422at 194.662 kb on + strand, within MPMX19_06422at 194.662 kb on + strand, within MPMX19_06422at 194.822 kb on + strand, within MPMX19_06422at 194.822 kb on + strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.992 kb on - strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.143 kb on - strandat 195.341 kb on + strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.365 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.569 kb on - strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.885 kb on - strandat 195.893 kb on + strandat 195.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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193,449 + +1.1
193,449 + -0.1
193,449 + -1.1
193,458 + -0.7
193,459 - -0.2
193,459 - +1.1
193,568 - +0.3
193,571 + -0.2
193,571 + -2.0
193,571 + -0.5
193,571 + +0.3
193,571 + +0.1
193,571 + -1.5
193,572 - +1.5
193,603 + -0.7
193,603 + -0.4
193,603 + -1.2
193,603 + +0.3
193,603 + +1.1
193,603 + -0.9
193,604 - -1.3
193,604 - -1.6
193,604 - -0.1
193,604 - +1.1
193,604 - +2.1
193,614 + -0.2
193,615 - -1.3
193,625 - -0.6
193,746 + -0.8
193,763 + -0.4
193,764 - -1.4
193,764 - -0.0
193,775 + -0.1
193,776 - -0.1
193,992 + +0.1
193,995 + +0.2
194,043 + +0.5
194,043 + -0.9
194,044 - +1.9
194,044 - +0.4
194,044 - +1.3
194,046 + -0.2
194,046 + -0.5
194,099 - +0.5
194,099 - +1.9
194,119 - -0.7
194,119 - +0.3
194,159 + -0.5
194,159 + +0.1
194,160 - -0.7
194,160 - -0.4
194,160 - -0.5
194,160 - -0.7
194,171 - +0.3
194,235 + -0.3
194,280 + -1.1
194,343 - -0.5
194,343 - -0.8
194,422 + -2.4
194,422 + -0.3
194,422 + +0.2
194,422 + +0.8
194,422 + +1.3
194,422 + -3.3
194,423 - -1.8
194,423 - -1.2
194,423 - -1.0
194,423 - -0.4
194,423 - +0.2
194,423 - -1.2
194,423 - -0.4
194,423 - -1.1
194,423 - -1.7
194,423 - +0.5
194,423 - -1.1
194,531 - MPMX19_06422 0.19 -0.7
194,556 + MPMX19_06422 0.24 -1.2
194,662 + MPMX19_06422 0.47 -1.1
194,662 + MPMX19_06422 0.47 -1.1
194,822 + MPMX19_06422 0.81 -0.2
194,822 + MPMX19_06422 0.81 -1.0
194,823 - MPMX19_06422 0.81 -0.2
194,823 - MPMX19_06422 0.81 +1.1
194,847 + MPMX19_06422 0.86 -0.7
194,847 + MPMX19_06422 0.86 -0.2
194,847 + MPMX19_06422 0.86 -0.9
194,847 + MPMX19_06422 0.86 -0.7
194,847 + MPMX19_06422 0.86 -1.7
194,847 + MPMX19_06422 0.86 -0.5
194,848 - MPMX19_06422 0.86 -1.8
194,848 - MPMX19_06422 0.86 -0.7
194,992 - -2.0
195,105 + -1.1
195,105 + -0.2
195,105 + -0.5
195,105 + -1.1
195,105 + -0.9
195,106 - -0.5
195,106 - -0.4
195,106 - -1.6
195,106 - +0.5
195,106 - -0.4
195,106 - -0.2
195,106 - +0.3
195,106 - -0.8
195,106 - -0.2
195,106 - -0.9
195,106 - -0.4
195,143 - -0.1
195,341 + MPMX19_06423 0.27 +0.5
195,342 - MPMX19_06423 0.28 -0.3
195,342 - MPMX19_06423 0.28 +1.9
195,342 - MPMX19_06423 0.28 -1.3
195,342 - MPMX19_06423 0.28 +0.1
195,365 + MPMX19_06423 0.31 +0.4
195,439 + MPMX19_06423 0.44 -1.9
195,439 + MPMX19_06423 0.44 +1.2
195,519 + MPMX19_06423 0.57 +0.1
195,519 + MPMX19_06423 0.57 +0.3
195,519 + MPMX19_06423 0.57 +0.5
195,519 + MPMX19_06423 0.57 -1.8
195,519 + MPMX19_06423 0.57 +0.1
195,519 + MPMX19_06423 0.57 -0.4
195,519 + MPMX19_06423 0.57 -0.3
195,519 + MPMX19_06423 0.57 -0.7
195,519 + MPMX19_06423 0.57 -0.5
195,520 - MPMX19_06423 0.57 -1.4
195,520 - MPMX19_06423 0.57 -0.9
195,520 - MPMX19_06423 0.57 +0.5
195,520 - MPMX19_06423 0.57 -1.9
195,520 - MPMX19_06423 0.57 -1.5
195,520 - MPMX19_06423 0.57 +0.1
195,520 - MPMX19_06423 0.57 +0.2
195,520 - MPMX19_06423 0.57 -0.3
195,520 - MPMX19_06423 0.57 -0.4
195,520 - MPMX19_06423 0.57 +0.8
195,520 - MPMX19_06423 0.57 -0.3
195,520 - MPMX19_06423 0.57 -1.1
195,520 - MPMX19_06423 0.57 -1.0
195,521 + MPMX19_06423 0.57 -0.9
195,521 + MPMX19_06423 0.57 +0.2
195,521 + MPMX19_06423 0.57 -0.3
195,522 - MPMX19_06423 0.57 +0.0
195,522 - MPMX19_06423 0.57 -1.4
195,522 - MPMX19_06423 0.57 -0.4
195,522 - MPMX19_06423 0.57 -1.3
195,568 + MPMX19_06423 0.65 -1.1
195,568 + MPMX19_06423 0.65 -0.8
195,569 - MPMX19_06423 0.65 -1.2
195,661 + MPMX19_06423 0.81 +0.7
195,661 + MPMX19_06423 0.81 -2.4
195,661 + MPMX19_06423 0.81 -0.8
195,661 + MPMX19_06423 0.81 -0.7
195,661 + MPMX19_06423 0.81 +0.9
195,885 - +0.8
195,893 + -0.1
195,894 - +0.3

Or see this region's nucleotide sequence