Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06420

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06419 and MPMX19_06420 are separated by 99 nucleotidesMPMX19_06420 and MPMX19_06421 are separated by 224 nucleotides MPMX19_06419: MPMX19_06419 - IS110 family transposase ISHne3, at 189,900 to 190,586 _06419 MPMX19_06420: MPMX19_06420 - hypothetical protein, at 190,686 to 191,078 _06420 MPMX19_06421: MPMX19_06421 - hypothetical protein, at 191,303 to 192,928 _06421 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 189.725 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.726 kb on - strandat 189.726 kb on - strandat 189.726 kb on - strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.901 kb on + strandat 189.902 kb on - strandat 189.902 kb on - strandat 189.902 kb on - strandat 189.902 kb on - strandat 190.048 kb on + strand, within MPMX19_06419at 190.048 kb on + strand, within MPMX19_06419at 190.048 kb on + strand, within MPMX19_06419at 190.048 kb on + strand, within MPMX19_06419at 190.049 kb on - strand, within MPMX19_06419at 190.049 kb on - strand, within MPMX19_06419at 190.118 kb on - strand, within MPMX19_06419at 190.561 kb on + strandat 190.561 kb on + strandat 190.561 kb on + strandat 190.561 kb on + strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.562 kb on - strandat 190.566 kb on + strandat 190.567 kb on - strandat 190.567 kb on - strandat 190.567 kb on - strandat 190.590 kb on + strandat 190.590 kb on + strandat 190.591 kb on - strandat 190.612 kb on + strandat 190.613 kb on - strandat 190.627 kb on + strandat 190.628 kb on - strandat 190.628 kb on - strandat 190.852 kb on - strand, within MPMX19_06420at 190.852 kb on - strand, within MPMX19_06420at 190.852 kb on - strand, within MPMX19_06420at 190.872 kb on + strand, within MPMX19_06420at 190.872 kb on + strand, within MPMX19_06420at 190.872 kb on + strand, within MPMX19_06420at 190.872 kb on + strand, within MPMX19_06420at 190.873 kb on - strand, within MPMX19_06420at 190.873 kb on - strand, within MPMX19_06420at 190.873 kb on - strand, within MPMX19_06420at 191.184 kb on + strandat 191.184 kb on + strandat 191.185 kb on - strandat 191.185 kb on - strandat 191.201 kb on + strandat 191.202 kb on - strandat 191.270 kb on - strandat 191.270 kb on - strandat 191.300 kb on + strandat 191.301 kb on - strandat 191.304 kb on + strandat 191.304 kb on + strandat 191.304 kb on + strandat 191.304 kb on + strandat 191.304 kb on + strandat 191.304 kb on + strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.305 kb on - strandat 191.306 kb on + strandat 191.331 kb on + strandat 191.332 kb on - strandat 191.332 kb on - strandat 191.391 kb on + strandat 191.628 kb on + strand, within MPMX19_06421at 191.628 kb on + strand, within MPMX19_06421at 191.628 kb on + strand, within MPMX19_06421at 191.628 kb on + strand, within MPMX19_06421at 191.628 kb on + strand, within MPMX19_06421at 191.629 kb on - strand, within MPMX19_06421at 191.658 kb on + strand, within MPMX19_06421at 191.658 kb on + strand, within MPMX19_06421at 191.658 kb on + strand, within MPMX19_06421at 191.658 kb on + strand, within MPMX19_06421at 191.659 kb on - strand, within MPMX19_06421at 191.659 kb on - strand, within MPMX19_06421at 191.659 kb on - strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.707 kb on + strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.708 kb on - strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.711 kb on + strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.712 kb on - strand, within MPMX19_06421at 191.856 kb on + strand, within MPMX19_06421at 191.891 kb on - strand, within MPMX19_06421at 191.919 kb on + strand, within MPMX19_06421at 191.919 kb on + strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.920 kb on - strand, within MPMX19_06421at 191.922 kb on + strand, within MPMX19_06421at 191.922 kb on + strand, within MPMX19_06421at 191.922 kb on + strand, within MPMX19_06421at 191.922 kb on + strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.923 kb on - strand, within MPMX19_06421at 191.928 kb on + strand, within MPMX19_06421at 191.929 kb on - strand, within MPMX19_06421at 191.982 kb on - strand, within MPMX19_06421at 191.982 kb on - strand, within MPMX19_06421at 192.000 kb on + strand, within MPMX19_06421at 192.000 kb on + strand, within MPMX19_06421at 192.000 kb on + strand, within MPMX19_06421at 192.016 kb on + strand, within MPMX19_06421at 192.016 kb on + strand, within MPMX19_06421

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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189,725 + -0.7
189,725 + -1.7
189,725 + +0.5
189,725 + +0.3
189,725 + +0.4
189,726 - +0.1
189,726 - -0.1
189,726 - -1.8
189,901 + -2.1
189,901 + +0.3
189,901 + -2.2
189,901 + +0.1
189,901 + -1.8
189,901 + -0.1
189,901 + +1.6
189,902 - +0.9
189,902 - +0.3
189,902 - +0.1
189,902 - -2.1
190,048 + MPMX19_06419 0.22 -0.1
190,048 + MPMX19_06419 0.22 -0.5
190,048 + MPMX19_06419 0.22 -1.2
190,048 + MPMX19_06419 0.22 -0.1
190,049 - MPMX19_06419 0.22 -0.7
190,049 - MPMX19_06419 0.22 +0.0
190,118 - MPMX19_06419 0.32 +0.8
190,561 + +0.2
190,561 + +0.3
190,561 + -0.6
190,561 + +0.6
190,562 - +0.1
190,562 - -0.9
190,562 - +0.2
190,562 - -0.5
190,562 - -0.5
190,562 - -0.4
190,562 - -0.8
190,562 - -0.9
190,562 - -0.1
190,566 + -1.2
190,567 - +0.1
190,567 - -2.6
190,567 - +0.2
190,590 + -0.9
190,590 + -1.0
190,591 - +0.3
190,612 + -0.4
190,613 - -0.8
190,627 + -1.7
190,628 - -0.1
190,628 - +0.3
190,852 - MPMX19_06420 0.42 -0.1
190,852 - MPMX19_06420 0.42 -0.2
190,852 - MPMX19_06420 0.42 +1.1
190,872 + MPMX19_06420 0.47 -0.4
190,872 + MPMX19_06420 0.47 +0.3
190,872 + MPMX19_06420 0.47 +0.5
190,872 + MPMX19_06420 0.47 -1.4
190,873 - MPMX19_06420 0.48 -0.4
190,873 - MPMX19_06420 0.48 +1.7
190,873 - MPMX19_06420 0.48 +0.5
191,184 + -1.7
191,184 + +0.1
191,185 - -0.2
191,185 - +0.2
191,201 + +1.9
191,202 - -0.9
191,270 - +1.3
191,270 - -0.9
191,300 + +0.9
191,301 - -0.1
191,304 + +0.8
191,304 + -0.7
191,304 + -0.1
191,304 + -0.1
191,304 + +0.5
191,304 + -0.2
191,305 - -1.5
191,305 - +1.8
191,305 - +0.3
191,305 - -0.9
191,305 - +0.8
191,305 - -1.1
191,305 - +0.8
191,305 - +0.5
191,305 - -1.3
191,305 - -1.7
191,306 + +0.1
191,331 + +0.3
191,332 - -1.7
191,332 - -0.1
191,391 + -1.7
191,628 + MPMX19_06421 0.20 -0.2
191,628 + MPMX19_06421 0.20 -0.5
191,628 + MPMX19_06421 0.20 -2.3
191,628 + MPMX19_06421 0.20 -0.4
191,628 + MPMX19_06421 0.20 -0.6
191,629 - MPMX19_06421 0.20 -0.3
191,658 + MPMX19_06421 0.22 -2.1
191,658 + MPMX19_06421 0.22 +0.0
191,658 + MPMX19_06421 0.22 +0.7
191,658 + MPMX19_06421 0.22 -1.5
191,659 - MPMX19_06421 0.22 +0.1
191,659 - MPMX19_06421 0.22 +1.4
191,659 - MPMX19_06421 0.22 +1.5
191,707 + MPMX19_06421 0.25 -0.4
191,707 + MPMX19_06421 0.25 +1.4
191,707 + MPMX19_06421 0.25 -0.1
191,707 + MPMX19_06421 0.25 -2.8
191,707 + MPMX19_06421 0.25 +0.2
191,707 + MPMX19_06421 0.25 +0.2
191,707 + MPMX19_06421 0.25 +1.9
191,707 + MPMX19_06421 0.25 +0.1
191,707 + MPMX19_06421 0.25 +1.2
191,707 + MPMX19_06421 0.25 -1.1
191,708 - MPMX19_06421 0.25 -0.7
191,708 - MPMX19_06421 0.25 -1.0
191,708 - MPMX19_06421 0.25 -1.1
191,708 - MPMX19_06421 0.25 -1.6
191,708 - MPMX19_06421 0.25 -1.1
191,708 - MPMX19_06421 0.25 -0.1
191,708 - MPMX19_06421 0.25 -0.1
191,708 - MPMX19_06421 0.25 -0.1
191,711 + MPMX19_06421 0.25 -0.9
191,711 + MPMX19_06421 0.25 -0.1
191,711 + MPMX19_06421 0.25 -0.3
191,711 + MPMX19_06421 0.25 -0.9
191,711 + MPMX19_06421 0.25 -0.0
191,711 + MPMX19_06421 0.25 -1.2
191,711 + MPMX19_06421 0.25 -0.9
191,711 + MPMX19_06421 0.25 -0.7
191,711 + MPMX19_06421 0.25 +1.9
191,711 + MPMX19_06421 0.25 -0.8
191,711 + MPMX19_06421 0.25 -1.3
191,711 + MPMX19_06421 0.25 +0.2
191,711 + MPMX19_06421 0.25 +0.5
191,711 + MPMX19_06421 0.25 +0.5
191,711 + MPMX19_06421 0.25 +0.3
191,711 + MPMX19_06421 0.25 -1.5
191,711 + MPMX19_06421 0.25 +0.6
191,712 - MPMX19_06421 0.25 +0.1
191,712 - MPMX19_06421 0.25 -1.7
191,712 - MPMX19_06421 0.25 -0.9
191,712 - MPMX19_06421 0.25 +0.8
191,712 - MPMX19_06421 0.25 -1.8
191,712 - MPMX19_06421 0.25 -2.0
191,712 - MPMX19_06421 0.25 -1.4
191,712 - MPMX19_06421 0.25 +0.9
191,712 - MPMX19_06421 0.25 -1.8
191,856 + MPMX19_06421 0.34 -1.2
191,891 - MPMX19_06421 0.36 -1.9
191,919 + MPMX19_06421 0.38 +0.1
191,919 + MPMX19_06421 0.38 +0.1
191,920 - MPMX19_06421 0.38 -0.4
191,920 - MPMX19_06421 0.38 -1.2
191,920 - MPMX19_06421 0.38 -2.7
191,920 - MPMX19_06421 0.38 +1.3
191,920 - MPMX19_06421 0.38 -0.7
191,920 - MPMX19_06421 0.38 +0.1
191,920 - MPMX19_06421 0.38 -0.9
191,920 - MPMX19_06421 0.38 -0.2
191,920 - MPMX19_06421 0.38 -1.4
191,922 + MPMX19_06421 0.38 -1.5
191,922 + MPMX19_06421 0.38 +0.1
191,922 + MPMX19_06421 0.38 -1.9
191,922 + MPMX19_06421 0.38 -0.3
191,923 - MPMX19_06421 0.38 +1.6
191,923 - MPMX19_06421 0.38 -2.0
191,923 - MPMX19_06421 0.38 -0.7
191,923 - MPMX19_06421 0.38 +0.3
191,923 - MPMX19_06421 0.38 +0.6
191,923 - MPMX19_06421 0.38 +0.2
191,923 - MPMX19_06421 0.38 -0.9
191,923 - MPMX19_06421 0.38 -1.7
191,923 - MPMX19_06421 0.38 -0.7
191,923 - MPMX19_06421 0.38 -0.4
191,928 + MPMX19_06421 0.38 -0.9
191,929 - MPMX19_06421 0.38 -0.1
191,982 - MPMX19_06421 0.42 -1.2
191,982 - MPMX19_06421 0.42 +1.1
192,000 + MPMX19_06421 0.43 +0.9
192,000 + MPMX19_06421 0.43 -1.5
192,000 + MPMX19_06421 0.43 -0.2
192,016 + MPMX19_06421 0.44 +0.7
192,016 + MPMX19_06421 0.44 +0.9

Or see this region's nucleotide sequence