Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06283 and MPMX19_06284 are separated by 220 nucleotides MPMX19_06284 and MPMX19_06285 are separated by 291 nucleotides
MPMX19_06283: MPMX19_06283 - ISL3 family transposase ISAzba9, at 33,489 to 35,147
_06283
MPMX19_06284: MPMX19_06284 - hypothetical protein, at 35,368 to 36,030
_06284
MPMX19_06285: MPMX19_06285 - Cyclic beta-(1,2)-glucan synthase NdvB, at 36,322 to 44,931
_06285
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.975 kb on + strand, within MPMX19_06283 at 35.049 kb on + strand at 35.049 kb on + strand at 35.049 kb on + strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.062 kb on + strand at 35.063 kb on - strand at 35.069 kb on + strand at 35.070 kb on - strand at 35.070 kb on - strand at 35.275 kb on - strand at 35.344 kb on + strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.491 kb on - strand, within MPMX19_06284 at 35.631 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.133 kb on - strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.231 kb on + strand at 36.231 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.264 kb on - strand at 36.264 kb on - strand at 36.303 kb on + strand at 36.304 kb on - strand at 36.304 kb on - strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.682 kb on + strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.685 kb on + strand at 36.685 kb on + strand at 36.686 kb on - strand at 36.686 kb on - strand at 36.686 kb on - strand at 36.817 kb on + strand at 36.817 kb on + strand at 36.818 kb on - strand at 36.818 kb on - strand at 36.818 kb on - strand at 36.867 kb on + strand at 36.867 kb on + strand at 36.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 34,492 + MPMX19_06283 0.60 +0.6 34,492 + MPMX19_06283 0.60 -0.8 34,492 + MPMX19_06283 0.60 +0.3 34,493 - MPMX19_06283 0.61 -1.4 34,493 - MPMX19_06283 0.61 -0.9 34,975 + MPMX19_06283 0.90 -0.2 35,049 + -0.1 35,049 + -0.9 35,049 + -1.1 35,050 - -0.1 35,050 - -1.0 35,050 - -0.5 35,062 + +0.3 35,063 - -0.7 35,069 + -0.2 35,070 - +0.9 35,070 - +1.1 35,275 - -1.5 35,344 + -0.4 35,345 - -0.7 35,345 - -0.1 35,345 - +0.8 35,345 - -1.2 35,345 - +1.5 35,415 + -1.7 35,415 + -1.9 35,415 + +0.2 35,415 + +0.1 35,416 - +0.1 35,416 - -0.9 35,416 - -1.2 35,416 - +0.3 35,442 + MPMX19_06284 0.11 -0.2 35,442 + MPMX19_06284 0.11 +0.8 35,442 + MPMX19_06284 0.11 -1.1 35,442 + MPMX19_06284 0.11 +0.3 35,442 + MPMX19_06284 0.11 -1.6 35,442 + MPMX19_06284 0.11 -1.1 35,442 + MPMX19_06284 0.11 -0.8 35,442 + MPMX19_06284 0.11 -0.9 35,442 + MPMX19_06284 0.11 -2.0 35,442 + MPMX19_06284 0.11 -0.9 35,442 + MPMX19_06284 0.11 -0.0 35,442 + MPMX19_06284 0.11 +0.1 35,442 + MPMX19_06284 0.11 +0.9 35,442 + MPMX19_06284 0.11 -0.4 35,443 - MPMX19_06284 0.11 -2.0 35,443 - MPMX19_06284 0.11 +0.2 35,443 - MPMX19_06284 0.11 -1.2 35,443 - MPMX19_06284 0.11 +0.9 35,443 - MPMX19_06284 0.11 -1.5 35,443 - MPMX19_06284 0.11 -1.3 35,443 - MPMX19_06284 0.11 -1.6 35,443 - MPMX19_06284 0.11 -0.8 35,443 - MPMX19_06284 0.11 -0.2 35,443 - MPMX19_06284 0.11 -0.9 35,443 - MPMX19_06284 0.11 +0.3 35,491 - MPMX19_06284 0.19 +0.3 35,631 + MPMX19_06284 0.40 -0.8 35,757 + MPMX19_06284 0.59 -0.0 35,757 + MPMX19_06284 0.59 +0.3 35,757 + MPMX19_06284 0.59 +1.5 35,757 + MPMX19_06284 0.59 -1.8 35,757 + MPMX19_06284 0.59 -0.2 35,757 + MPMX19_06284 0.59 -1.4 35,757 + MPMX19_06284 0.59 +0.3 35,758 - MPMX19_06284 0.59 -2.3 35,758 - MPMX19_06284 0.59 +1.2 35,758 - MPMX19_06284 0.59 +0.5 35,758 - MPMX19_06284 0.59 +0.7 35,758 - MPMX19_06284 0.59 +0.9 35,758 - MPMX19_06284 0.59 -0.8 35,758 - MPMX19_06284 0.59 +0.6 35,758 - MPMX19_06284 0.59 -0.1 35,758 - MPMX19_06284 0.59 +1.1 35,758 - MPMX19_06284 0.59 -0.6 35,802 + MPMX19_06284 0.65 +1.9 35,802 + MPMX19_06284 0.65 +0.3 35,829 - MPMX19_06284 0.70 -0.3 35,829 - MPMX19_06284 0.70 -1.1 35,829 - MPMX19_06284 0.70 -0.8 35,892 + MPMX19_06284 0.79 +0.0 35,892 + MPMX19_06284 0.79 -0.4 35,892 + MPMX19_06284 0.79 +0.6 35,892 + MPMX19_06284 0.79 +0.0 35,892 + MPMX19_06284 0.79 +0.9 35,892 + MPMX19_06284 0.79 -0.5 35,892 + MPMX19_06284 0.79 -2.0 35,892 + MPMX19_06284 0.79 +0.6 35,892 + MPMX19_06284 0.79 -1.2 35,892 + MPMX19_06284 0.79 -0.7 35,892 + MPMX19_06284 0.79 -1.5 35,892 + MPMX19_06284 0.79 +0.3 35,892 + MPMX19_06284 0.79 -3.4 35,892 + MPMX19_06284 0.79 -1.1 35,892 + MPMX19_06284 0.79 +0.2 35,892 + MPMX19_06284 0.79 -2.4 35,892 + MPMX19_06284 0.79 -1.2 35,893 - MPMX19_06284 0.79 -1.3 35,893 - MPMX19_06284 0.79 -0.7 35,893 - MPMX19_06284 0.79 -0.4 35,893 - MPMX19_06284 0.79 -0.4 35,893 - MPMX19_06284 0.79 -0.1 35,893 - MPMX19_06284 0.79 -0.7 35,893 - MPMX19_06284 0.79 -0.1 35,893 - MPMX19_06284 0.79 -0.9 35,893 - MPMX19_06284 0.79 -1.9 35,893 - MPMX19_06284 0.79 -1.7 35,984 + -1.4 35,984 + -0.4 35,984 + +0.4 35,984 + +0.8 35,984 + +1.9 36,132 + +0.1 36,132 + -0.2 36,132 + +0.7 36,132 + +0.3 36,132 + -1.7 36,133 - +0.8 36,173 + -1.8 36,173 + -0.4 36,173 + -1.2 36,173 + +1.1 36,173 + -0.1 36,174 - -0.4 36,174 - -0.5 36,174 - -0.5 36,174 - +0.1 36,174 - -1.3 36,174 - -1.5 36,174 - -1.4 36,231 + -0.4 36,231 + +1.3 36,263 + -0.0 36,263 + -0.2 36,263 + +0.1 36,263 + -1.5 36,263 + -0.3 36,263 + -1.1 36,264 - -0.9 36,264 - +0.5 36,303 + -0.7 36,304 - +0.2 36,304 - -0.6 36,628 + -0.1 36,628 + -0.4 36,628 + -0.1 36,628 + -0.7 36,628 + -2.1 36,628 + +0.0 36,628 + -0.7 36,628 + -0.2 36,628 + -0.5 36,628 + -0.9 36,628 + -0.8 36,628 + +0.6 36,629 - +0.6 36,629 - -0.3 36,629 - -0.7 36,629 - -1.8 36,629 - -0.7 36,629 - -0.8 36,629 - -0.7 36,629 - -1.0 36,629 - +0.9 36,629 - -0.3 36,629 - +1.6 36,629 - +1.4 36,629 - +0.3 36,629 - -0.9 36,629 - -1.4 36,682 + -0.2 36,683 - -1.2 36,683 - +1.1 36,683 - -0.1 36,685 + +1.3 36,685 + +1.9 36,686 - -1.9 36,686 - +0.0 36,686 - -2.0 36,817 + -2.1 36,817 + -0.2 36,818 - -1.6 36,818 - -0.7 36,818 - +1.4 36,867 + -0.7 36,867 + +1.9 36,867 + +0.3
Or see this region's nucleotide sequence