Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06206 and MPMX19_06207 are separated by 388 nucleotides MPMX19_06207 and MPMX19_06208 are separated by 114 nucleotides MPMX19_06208 and MPMX19_06209 are separated by 32 nucleotides MPMX19_06209 and MPMX19_06210 are separated by 4 nucleotides MPMX19_06210 and MPMX19_06211 are separated by 73 nucleotides MPMX19_06211 and MPMX19_06212 are separated by 38 nucleotides MPMX19_06212 and MPMX19_06213 are separated by 75 nucleotides
MPMX19_06206: MPMX19_06206 - Cell cycle response regulator CtrA, at 392,656 to 393,468
_06206
MPMX19_06207: MPMX19_06207 - hypothetical protein, at 393,857 to 394,300
_06207
MPMX19_06208: MPMX19_06208 - tRNA-Val, at 394,415 to 394,489
_06208
MPMX19_06209: MPMX19_06209 - tRNA-Gly, at 394,522 to 394,596
_06209
MPMX19_06210: MPMX19_06210 - tRNA-Asp, at 394,601 to 394,677
_06210
MPMX19_06211: MPMX19_06211 - tRNA-Ala, at 394,751 to 394,826
_06211
MPMX19_06212: MPMX19_06212 - tRNA-Leu, at 394,865 to 394,951
_06212
MPMX19_06213: MPMX19_06213 - Cardiolipin synthase B, at 395,027 to 396,661
_06213
Position (kb)
393
394
395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.883 kb on + strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.884 kb on - strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.885 kb on + strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.886 kb on - strand, within MPMX19_06206 at 392.930 kb on + strand, within MPMX19_06206 at 392.930 kb on + strand, within MPMX19_06206 at 392.931 kb on - strand, within MPMX19_06206 at 392.942 kb on + strand, within MPMX19_06206 at 392.942 kb on + strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 392.943 kb on - strand, within MPMX19_06206 at 393.107 kb on + strand, within MPMX19_06206 at 393.107 kb on + strand, within MPMX19_06206 at 393.107 kb on + strand, within MPMX19_06206 at 393.107 kb on + strand, within MPMX19_06206 at 393.108 kb on - strand, within MPMX19_06206 at 393.394 kb on - strand at 393.394 kb on - strand at 393.498 kb on + strand at 393.499 kb on - strand at 393.499 kb on - strand at 393.499 kb on - strand at 393.574 kb on + strand at 393.601 kb on - strand at 393.601 kb on - strand at 393.606 kb on + strand at 393.606 kb on + strand at 393.606 kb on + strand at 393.607 kb on - strand at 393.624 kb on + strand at 393.625 kb on - strand at 393.635 kb on - strand at 393.635 kb on - strand at 393.648 kb on + strand at 393.651 kb on + strand at 393.687 kb on - strand at 393.734 kb on + strand at 393.734 kb on + strand at 393.735 kb on - strand at 393.735 kb on - strand at 393.750 kb on + strand at 393.750 kb on + strand at 393.750 kb on + strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.751 kb on - strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.788 kb on + strand at 393.789 kb on - strand at 393.789 kb on - strand at 393.809 kb on - strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.822 kb on + strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 393.823 kb on - strand at 394.034 kb on + strand, within MPMX19_06207 at 394.034 kb on + strand, within MPMX19_06207 at 394.034 kb on + strand, within MPMX19_06207 at 394.047 kb on - strand, within MPMX19_06207 at 394.047 kb on - strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.160 kb on + strand, within MPMX19_06207 at 394.161 kb on - strand, within MPMX19_06207 at 394.501 kb on - strand at 394.501 kb on - strand at 394.503 kb on - strand at 394.696 kb on - strand at 394.696 kb on - strand at 394.698 kb on - strand at 394.698 kb on - strand at 394.698 kb on - strand at 394.786 kb on - strand, within MPMX19_06211 at 394.786 kb on - strand, within MPMX19_06211 at 394.786 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.799 kb on - strand, within MPMX19_06211 at 394.989 kb on + strand at 394.989 kb on + strand at 394.989 kb on + strand at 394.990 kb on - strand at 394.990 kb on - strand at 394.993 kb on + strand at 394.993 kb on + strand at 394.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 392,883 + MPMX19_06206 0.28 -0.6 392,883 + MPMX19_06206 0.28 -1.2 392,883 + MPMX19_06206 0.28 +0.4 392,883 + MPMX19_06206 0.28 -2.9 392,883 + MPMX19_06206 0.28 -1.3 392,883 + MPMX19_06206 0.28 -1.7 392,883 + MPMX19_06206 0.28 -0.7 392,883 + MPMX19_06206 0.28 +0.3 392,883 + MPMX19_06206 0.28 -0.4 392,883 + MPMX19_06206 0.28 -1.2 392,883 + MPMX19_06206 0.28 -0.5 392,883 + MPMX19_06206 0.28 +0.4 392,883 + MPMX19_06206 0.28 +0.8 392,883 + MPMX19_06206 0.28 -0.2 392,883 + MPMX19_06206 0.28 -0.0 392,883 + MPMX19_06206 0.28 +1.0 392,883 + MPMX19_06206 0.28 -0.6 392,883 + MPMX19_06206 0.28 +0.3 392,883 + MPMX19_06206 0.28 -0.7 392,884 - MPMX19_06206 0.28 +0.3 392,884 - MPMX19_06206 0.28 +1.4 392,884 - MPMX19_06206 0.28 +0.6 392,884 - MPMX19_06206 0.28 +0.3 392,884 - MPMX19_06206 0.28 -1.2 392,884 - MPMX19_06206 0.28 +0.3 392,884 - MPMX19_06206 0.28 +2.2 392,884 - MPMX19_06206 0.28 -2.2 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 -0.2 392,885 + MPMX19_06206 0.28 -0.7 392,885 + MPMX19_06206 0.28 -1.9 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 +0.3 392,885 + MPMX19_06206 0.28 +1.2 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 -1.2 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 +1.0 392,885 + MPMX19_06206 0.28 +1.1 392,885 + MPMX19_06206 0.28 +0.3 392,885 + MPMX19_06206 0.28 -0.6 392,885 + MPMX19_06206 0.28 -0.5 392,885 + MPMX19_06206 0.28 -0.5 392,885 + MPMX19_06206 0.28 -1.5 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 +0.9 392,885 + MPMX19_06206 0.28 +0.2 392,885 + MPMX19_06206 0.28 -0.4 392,885 + MPMX19_06206 0.28 -1.0 392,885 + MPMX19_06206 0.28 +0.7 392,885 + MPMX19_06206 0.28 -0.9 392,885 + MPMX19_06206 0.28 -0.0 392,885 + MPMX19_06206 0.28 +0.8 392,885 + MPMX19_06206 0.28 +0.5 392,886 - MPMX19_06206 0.28 +1.3 392,886 - MPMX19_06206 0.28 +0.8 392,886 - MPMX19_06206 0.28 -0.2 392,886 - MPMX19_06206 0.28 +1.7 392,886 - MPMX19_06206 0.28 +0.8 392,886 - MPMX19_06206 0.28 -0.5 392,886 - MPMX19_06206 0.28 -1.2 392,886 - MPMX19_06206 0.28 +0.7 392,886 - MPMX19_06206 0.28 -0.3 392,886 - MPMX19_06206 0.28 -1.5 392,886 - MPMX19_06206 0.28 +1.0 392,886 - MPMX19_06206 0.28 -0.6 392,886 - MPMX19_06206 0.28 +0.6 392,886 - MPMX19_06206 0.28 +1.8 392,886 - MPMX19_06206 0.28 +0.1 392,886 - MPMX19_06206 0.28 -0.7 392,886 - MPMX19_06206 0.28 -1.9 392,886 - MPMX19_06206 0.28 +0.6 392,886 - MPMX19_06206 0.28 -1.3 392,886 - MPMX19_06206 0.28 +0.7 392,886 - MPMX19_06206 0.28 +0.7 392,886 - MPMX19_06206 0.28 +1.8 392,886 - MPMX19_06206 0.28 -0.3 392,886 - MPMX19_06206 0.28 -1.0 392,930 + MPMX19_06206 0.34 -0.7 392,930 + MPMX19_06206 0.34 +0.5 392,931 - MPMX19_06206 0.34 -0.9 392,942 + MPMX19_06206 0.35 -0.6 392,942 + MPMX19_06206 0.35 -0.3 392,943 - MPMX19_06206 0.35 +0.3 392,943 - MPMX19_06206 0.35 +0.4 392,943 - MPMX19_06206 0.35 +0.4 392,943 - MPMX19_06206 0.35 +0.4 392,943 - MPMX19_06206 0.35 +0.5 392,943 - MPMX19_06206 0.35 +0.6 392,943 - MPMX19_06206 0.35 -0.5 392,943 - MPMX19_06206 0.35 -0.2 392,943 - MPMX19_06206 0.35 -1.4 392,943 - MPMX19_06206 0.35 +1.2 393,107 + MPMX19_06206 0.55 -1.3 393,107 + MPMX19_06206 0.55 -2.1 393,107 + MPMX19_06206 0.55 -1.6 393,107 + MPMX19_06206 0.55 -2.0 393,108 - MPMX19_06206 0.56 -0.6 393,394 - +0.7 393,394 - +0.3 393,498 + -2.2 393,499 - +0.3 393,499 - +0.6 393,499 - -0.0 393,574 + -1.8 393,601 - +0.3 393,601 - -0.3 393,606 + -1.5 393,606 + -1.9 393,606 + -1.3 393,607 - +0.0 393,624 + -1.3 393,625 - -0.5 393,635 - +0.0 393,635 - +1.0 393,648 + +0.3 393,651 + -0.9 393,687 - -1.3 393,734 + -0.7 393,734 + -0.3 393,735 - -1.5 393,735 - -0.5 393,750 + -1.0 393,750 + +1.8 393,750 + -1.7 393,751 - -0.6 393,751 - -1.2 393,751 - -0.2 393,751 - +0.5 393,751 - +0.6 393,751 - -0.5 393,751 - -0.0 393,788 + -3.9 393,788 + -2.2 393,788 + -0.2 393,788 + -0.3 393,789 - +0.3 393,789 - +1.0 393,809 - -1.5 393,822 + +0.5 393,822 + -0.5 393,822 + -0.9 393,822 + +0.7 393,822 + -0.6 393,822 + -1.0 393,823 - +0.6 393,823 - -1.4 393,823 - -0.7 393,823 - -2.0 393,823 - -2.5 394,034 + MPMX19_06207 0.40 -1.4 394,034 + MPMX19_06207 0.40 +0.1 394,034 + MPMX19_06207 0.40 +0.1 394,047 - MPMX19_06207 0.43 +2.1 394,047 - MPMX19_06207 0.43 +0.8 394,160 + MPMX19_06207 0.68 +0.1 394,160 + MPMX19_06207 0.68 -1.3 394,160 + MPMX19_06207 0.68 +0.3 394,161 - MPMX19_06207 0.68 +0.5 394,501 - +0.3 394,501 - -2.8 394,503 - +0.7 394,696 - +0.1 394,696 - -1.8 394,698 - -1.1 394,698 - +0.3 394,698 - -1.2 394,786 - MPMX19_06211 0.46 -1.2 394,786 - MPMX19_06211 0.46 +0.1 394,786 - MPMX19_06211 0.46 +1.5 394,799 - MPMX19_06211 0.63 -0.3 394,799 - MPMX19_06211 0.63 -0.4 394,799 - MPMX19_06211 0.63 -0.5 394,799 - MPMX19_06211 0.63 -0.6 394,989 + +0.1 394,989 + +0.0 394,989 + -1.0 394,990 - -1.3 394,990 - +0.4 394,993 + +0.4 394,993 + +1.0 394,993 + -0.7
Or see this region's nucleotide sequence