Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06177

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06176 and MPMX19_06177 are separated by 3 nucleotidesMPMX19_06177 and MPMX19_06178 overlap by 4 nucleotidesMPMX19_06178 and MPMX19_06179 overlap by 4 nucleotides MPMX19_06176: MPMX19_06176 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 366,057 to 368,054 _06176 MPMX19_06177: MPMX19_06177 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 368,058 to 368,717 _06177 MPMX19_06178: MPMX19_06178 - hypothetical protein, at 368,714 to 369,148 _06178 MPMX19_06179: MPMX19_06179 - putative SURF1-like protein, at 369,145 to 369,930 _06179 Position (kb) 368 369Strain fitness (log2 ratio) -1 0 1at 367.390 kb on - strand, within MPMX19_06176at 367.390 kb on - strand, within MPMX19_06176at 367.961 kb on + strandat 367.971 kb on + strandat 368.052 kb on + strandat 368.849 kb on + strand, within MPMX19_06178at 369.694 kb on + strand, within MPMX19_06179at 369.694 kb on + strand, within MPMX19_06179

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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367,390 - MPMX19_06176 0.67 +0.8
367,390 - MPMX19_06176 0.67 -1.7
367,961 + -1.7
367,971 + -0.7
368,052 + +1.6
368,849 + MPMX19_06178 0.31 -0.7
369,694 + MPMX19_06179 0.70 -0.2
369,694 + MPMX19_06179 0.70 -0.7

Or see this region's nucleotide sequence