Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06168 and MPMX19_06169 are separated by 36 nucleotides MPMX19_06169 and MPMX19_06170 are separated by 507 nucleotides
MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229
_06168
MPMX19_06169: MPMX19_06169 - hypothetical protein, at 358,266 to 358,820
_06169
MPMX19_06170: MPMX19_06170 - hypothetical protein, at 359,328 to 360,821
_06170
Position (kb) 358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.357 kb on + strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.358 kb on - strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.588 kb on + strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.622 kb on - strand, within MPMX19_06169 at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.840 kb on + strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.841 kb on - strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.866 kb on + strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.867 kb on - strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.966 kb on + strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.967 kb on - strand at 358.971 kb on + strand at 358.971 kb on + strand at 358.992 kb on + strand at 358.992 kb on + strand at 358.993 kb on - strand at 358.993 kb on - strand at 359.002 kb on + strand at 359.208 kb on + strand at 359.208 kb on + strand at 359.209 kb on - strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.217 kb on + strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.218 kb on - strand at 359.269 kb on + strand at 359.269 kb on + strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.270 kb on - strand at 359.492 kb on + strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.493 kb on - strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.520 kb on + strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.521 kb on - strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.667 kb on + strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.668 kb on - strand, within MPMX19_06170 at 359.707 kb on - strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.772 kb on + strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170 at 359.773 kb on - strand, within MPMX19_06170
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 358,357 + MPMX19_06169 0.16 +0.3 358,357 + MPMX19_06169 0.16 +0.2 358,357 + MPMX19_06169 0.16 -0.0 358,357 + MPMX19_06169 0.16 -1.7 358,357 + MPMX19_06169 0.16 -0.2 358,357 + MPMX19_06169 0.16 -2.0 358,357 + MPMX19_06169 0.16 -0.7 358,357 + MPMX19_06169 0.16 -0.7 358,357 + MPMX19_06169 0.16 +0.7 358,358 - MPMX19_06169 0.17 -0.1 358,358 - MPMX19_06169 0.17 -0.3 358,358 - MPMX19_06169 0.17 -1.2 358,358 - MPMX19_06169 0.17 +0.1 358,358 - MPMX19_06169 0.17 -2.6 358,358 - MPMX19_06169 0.17 +0.1 358,358 - MPMX19_06169 0.17 +0.8 358,358 - MPMX19_06169 0.17 +0.7 358,358 - MPMX19_06169 0.17 -0.5 358,358 - MPMX19_06169 0.17 -0.2 358,358 - MPMX19_06169 0.17 +0.8 358,588 + MPMX19_06169 0.58 -1.0 358,588 + MPMX19_06169 0.58 +0.2 358,622 - MPMX19_06169 0.64 +0.3 358,622 - MPMX19_06169 0.64 +0.3 358,840 + -1.2 358,840 + +0.8 358,840 + +1.5 358,840 + +0.1 358,840 + +0.1 358,840 + -1.0 358,840 + +0.0 358,840 + +0.3 358,840 + +1.8 358,840 + +0.3 358,841 - +1.8 358,841 - +0.3 358,841 - +0.0 358,841 - -0.4 358,841 - -0.7 358,841 - -0.3 358,841 - -1.6 358,841 - -0.2 358,841 - +0.4 358,841 - -1.4 358,866 + -1.3 358,866 + +0.0 358,866 + -0.4 358,866 + -0.6 358,866 + -0.5 358,866 + -1.0 358,866 + -0.5 358,866 + -2.1 358,866 + +0.7 358,866 + +1.5 358,867 - -1.3 358,867 - -0.6 358,867 - -1.5 358,867 - -0.7 358,867 - -0.6 358,867 - +1.3 358,867 - -0.5 358,867 - -0.1 358,867 - +1.4 358,867 - -1.5 358,867 - +1.1 358,867 - +0.8 358,867 - -0.2 358,966 + -1.3 358,966 + -0.3 358,966 + -1.2 358,966 + -0.1 358,966 + +0.2 358,966 + +0.1 358,967 - +0.7 358,967 - -0.7 358,967 - -1.5 358,967 - -0.5 358,967 - -0.3 358,971 + -0.9 358,971 + +0.0 358,992 + +0.7 358,992 + -1.1 358,993 - -2.0 358,993 - -1.0 359,002 + -1.3 359,208 + -1.7 359,208 + -0.2 359,209 - +0.4 359,217 + -0.7 359,217 + -1.0 359,217 + +1.4 359,217 + -1.3 359,217 + +0.2 359,218 - -0.6 359,218 - -1.3 359,218 - +0.6 359,218 - -0.5 359,218 - +1.4 359,269 + -0.6 359,269 + -2.2 359,270 - -0.6 359,270 - -0.1 359,270 - +0.6 359,270 - -0.7 359,492 + MPMX19_06170 0.11 -0.7 359,493 - MPMX19_06170 0.11 -1.1 359,493 - MPMX19_06170 0.11 -1.3 359,493 - MPMX19_06170 0.11 +0.1 359,520 + MPMX19_06170 0.13 +0.1 359,520 + MPMX19_06170 0.13 -2.2 359,520 + MPMX19_06170 0.13 -1.1 359,521 - MPMX19_06170 0.13 +0.6 359,521 - MPMX19_06170 0.13 -2.0 359,521 - MPMX19_06170 0.13 -0.5 359,521 - MPMX19_06170 0.13 -0.2 359,667 + MPMX19_06170 0.23 +0.3 359,667 + MPMX19_06170 0.23 -0.2 359,667 + MPMX19_06170 0.23 +0.0 359,667 + MPMX19_06170 0.23 -0.0 359,667 + MPMX19_06170 0.23 -0.5 359,667 + MPMX19_06170 0.23 +0.4 359,667 + MPMX19_06170 0.23 -0.2 359,667 + MPMX19_06170 0.23 -0.2 359,668 - MPMX19_06170 0.23 -0.7 359,668 - MPMX19_06170 0.23 +0.5 359,668 - MPMX19_06170 0.23 +0.0 359,668 - MPMX19_06170 0.23 -1.4 359,668 - MPMX19_06170 0.23 +0.9 359,668 - MPMX19_06170 0.23 -2.2 359,668 - MPMX19_06170 0.23 +0.5 359,668 - MPMX19_06170 0.23 +1.0 359,668 - MPMX19_06170 0.23 -0.4 359,668 - MPMX19_06170 0.23 +0.0 359,707 - MPMX19_06170 0.25 -0.4 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -0.2 359,772 + MPMX19_06170 0.30 +0.4 359,772 + MPMX19_06170 0.30 -0.0 359,772 + MPMX19_06170 0.30 -0.9 359,772 + MPMX19_06170 0.30 +0.3 359,772 + MPMX19_06170 0.30 +0.8 359,772 + MPMX19_06170 0.30 -0.9 359,772 + MPMX19_06170 0.30 -0.5 359,772 + MPMX19_06170 0.30 +0.6 359,772 + MPMX19_06170 0.30 -0.2 359,772 + MPMX19_06170 0.30 -0.7 359,772 + MPMX19_06170 0.30 -0.5 359,772 + MPMX19_06170 0.30 +0.0 359,772 + MPMX19_06170 0.30 -0.0 359,772 + MPMX19_06170 0.30 +0.2 359,772 + MPMX19_06170 0.30 -0.5 359,772 + MPMX19_06170 0.30 -1.3 359,772 + MPMX19_06170 0.30 -0.9 359,772 + MPMX19_06170 0.30 -0.3 359,772 + MPMX19_06170 0.30 -1.8 359,772 + MPMX19_06170 0.30 +0.3 359,772 + MPMX19_06170 0.30 -0.5 359,772 + MPMX19_06170 0.30 +0.4 359,772 + MPMX19_06170 0.30 +0.0 359,773 - MPMX19_06170 0.30 -0.3 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 -2.0 359,773 - MPMX19_06170 0.30 +0.4 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 +0.3 359,773 - MPMX19_06170 0.30 -0.8 359,773 - MPMX19_06170 0.30 +0.1 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 -1.0 359,773 - MPMX19_06170 0.30 -1.5 359,773 - MPMX19_06170 0.30 -2.0
Or see this region's nucleotide sequence