Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06096

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06094 and MPMX19_06095 overlap by 8 nucleotidesMPMX19_06095 and MPMX19_06096 overlap by 4 nucleotidesMPMX19_06096 and MPMX19_06097 overlap by 58 nucleotides MPMX19_06094: MPMX19_06094 - Lactate utilization protein B, at 275,477 to 276,901 _06094 MPMX19_06095: MPMX19_06095 - hypothetical protein, at 276,894 to 277,556 _06095 MPMX19_06096: MPMX19_06096 - hypothetical protein, at 277,553 to 277,825 _06096 MPMX19_06097: MPMX19_06097 - D-amino acid dehydrogenase 1, at 277,768 to 279,069 _06097 Position (kb) 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 276.746 kb on + strand, within MPMX19_06094at 276.912 kb on + strandat 277.052 kb on + strand, within MPMX19_06095at 277.053 kb on - strand, within MPMX19_06095at 277.137 kb on + strand, within MPMX19_06095at 277.137 kb on + strand, within MPMX19_06095at 277.137 kb on + strand, within MPMX19_06095at 277.137 kb on + strand, within MPMX19_06095at 277.137 kb on + strand, within MPMX19_06095at 277.138 kb on - strand, within MPMX19_06095at 277.138 kb on - strand, within MPMX19_06095at 277.138 kb on - strand, within MPMX19_06095at 277.209 kb on + strand, within MPMX19_06095at 277.209 kb on + strand, within MPMX19_06095at 277.210 kb on - strand, within MPMX19_06095at 277.210 kb on - strand, within MPMX19_06095at 277.210 kb on - strand, within MPMX19_06095at 277.392 kb on + strand, within MPMX19_06095at 277.392 kb on + strand, within MPMX19_06095at 277.392 kb on + strand, within MPMX19_06095at 277.393 kb on - strand, within MPMX19_06095at 277.393 kb on - strand, within MPMX19_06095at 277.393 kb on - strand, within MPMX19_06095at 277.393 kb on - strand, within MPMX19_06095at 277.393 kb on - strand, within MPMX19_06095at 277.507 kb on - strandat 277.507 kb on - strandat 277.592 kb on + strand, within MPMX19_06096at 277.592 kb on + strand, within MPMX19_06096at 277.592 kb on + strand, within MPMX19_06096at 277.592 kb on + strand, within MPMX19_06096at 277.593 kb on - strand, within MPMX19_06096at 277.593 kb on - strand, within MPMX19_06096at 277.593 kb on - strand, within MPMX19_06096at 277.593 kb on - strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.745 kb on + strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.746 kb on - strand, within MPMX19_06096at 277.823 kb on + strandat 277.823 kb on + strandat 277.824 kb on - strandat 277.946 kb on + strand, within MPMX19_06097at 277.946 kb on + strand, within MPMX19_06097at 277.946 kb on + strand, within MPMX19_06097at 277.946 kb on + strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 277.947 kb on - strand, within MPMX19_06097at 278.244 kb on - strand, within MPMX19_06097at 278.244 kb on - strand, within MPMX19_06097at 278.244 kb on - strand, within MPMX19_06097at 278.244 kb on - strand, within MPMX19_06097at 278.258 kb on + strand, within MPMX19_06097at 278.303 kb on + strand, within MPMX19_06097at 278.303 kb on + strand, within MPMX19_06097at 278.303 kb on + strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.304 kb on - strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.324 kb on + strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.325 kb on - strand, within MPMX19_06097at 278.441 kb on + strand, within MPMX19_06097at 278.442 kb on - strand, within MPMX19_06097at 278.442 kb on - strand, within MPMX19_06097at 278.442 kb on - strand, within MPMX19_06097at 278.442 kb on - strand, within MPMX19_06097at 278.579 kb on + strand, within MPMX19_06097at 278.579 kb on + strand, within MPMX19_06097at 278.579 kb on + strand, within MPMX19_06097at 278.579 kb on + strand, within MPMX19_06097at 278.579 kb on + strand, within MPMX19_06097at 278.580 kb on - strand, within MPMX19_06097at 278.580 kb on - strand, within MPMX19_06097at 278.580 kb on - strand, within MPMX19_06097at 278.580 kb on - strand, within MPMX19_06097at 278.591 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.681 kb on + strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.682 kb on - strand, within MPMX19_06097at 278.729 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.768 kb on + strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097at 278.769 kb on - strand, within MPMX19_06097

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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276,746 + MPMX19_06094 0.89 +0.0
276,912 + +0.3
277,052 + MPMX19_06095 0.24 -0.2
277,053 - MPMX19_06095 0.24 -0.7
277,137 + MPMX19_06095 0.37 -1.9
277,137 + MPMX19_06095 0.37 -2.0
277,137 + MPMX19_06095 0.37 -1.0
277,137 + MPMX19_06095 0.37 -0.5
277,137 + MPMX19_06095 0.37 -0.6
277,138 - MPMX19_06095 0.37 +0.6
277,138 - MPMX19_06095 0.37 +0.7
277,138 - MPMX19_06095 0.37 -0.5
277,209 + MPMX19_06095 0.48 +0.1
277,209 + MPMX19_06095 0.48 -0.2
277,210 - MPMX19_06095 0.48 -0.5
277,210 - MPMX19_06095 0.48 -0.2
277,210 - MPMX19_06095 0.48 -0.5
277,392 + MPMX19_06095 0.75 +0.5
277,392 + MPMX19_06095 0.75 +0.2
277,392 + MPMX19_06095 0.75 -1.1
277,393 - MPMX19_06095 0.75 +0.6
277,393 - MPMX19_06095 0.75 -2.0
277,393 - MPMX19_06095 0.75 -0.5
277,393 - MPMX19_06095 0.75 -1.3
277,393 - MPMX19_06095 0.75 -1.1
277,507 - +0.3
277,507 - +0.7
277,592 + MPMX19_06096 0.14 -0.5
277,592 + MPMX19_06096 0.14 -0.1
277,592 + MPMX19_06096 0.14 +0.5
277,592 + MPMX19_06096 0.14 +1.4
277,593 - MPMX19_06096 0.15 +0.8
277,593 - MPMX19_06096 0.15 +0.8
277,593 - MPMX19_06096 0.15 -0.8
277,593 - MPMX19_06096 0.15 +0.4
277,745 + MPMX19_06096 0.70 -0.8
277,745 + MPMX19_06096 0.70 -0.7
277,745 + MPMX19_06096 0.70 +0.7
277,745 + MPMX19_06096 0.70 -1.0
277,745 + MPMX19_06096 0.70 -1.0
277,745 + MPMX19_06096 0.70 +1.5
277,745 + MPMX19_06096 0.70 -0.7
277,745 + MPMX19_06096 0.70 -0.3
277,745 + MPMX19_06096 0.70 +0.2
277,745 + MPMX19_06096 0.70 -1.0
277,745 + MPMX19_06096 0.70 +0.5
277,745 + MPMX19_06096 0.70 +0.3
277,745 + MPMX19_06096 0.70 -1.7
277,745 + MPMX19_06096 0.70 -0.0
277,745 + MPMX19_06096 0.70 +0.5
277,745 + MPMX19_06096 0.70 -0.3
277,745 + MPMX19_06096 0.70 +2.0
277,745 + MPMX19_06096 0.70 +0.6
277,745 + MPMX19_06096 0.70 +0.2
277,745 + MPMX19_06096 0.70 +1.0
277,745 + MPMX19_06096 0.70 -0.2
277,745 + MPMX19_06096 0.70 +0.8
277,745 + MPMX19_06096 0.70 +0.4
277,746 - MPMX19_06096 0.71 -1.5
277,746 - MPMX19_06096 0.71 +0.1
277,746 - MPMX19_06096 0.71 +0.7
277,746 - MPMX19_06096 0.71 -0.7
277,746 - MPMX19_06096 0.71 -1.7
277,746 - MPMX19_06096 0.71 +0.8
277,746 - MPMX19_06096 0.71 +0.3
277,746 - MPMX19_06096 0.71 +0.7
277,746 - MPMX19_06096 0.71 -2.4
277,746 - MPMX19_06096 0.71 +0.5
277,746 - MPMX19_06096 0.71 -0.4
277,746 - MPMX19_06096 0.71 +1.0
277,746 - MPMX19_06096 0.71 -0.2
277,746 - MPMX19_06096 0.71 -0.9
277,823 + -0.9
277,823 + +0.3
277,824 - +0.5
277,946 + MPMX19_06097 0.14 -1.0
277,946 + MPMX19_06097 0.14 +0.3
277,946 + MPMX19_06097 0.14 -1.9
277,946 + MPMX19_06097 0.14 -0.2
277,947 - MPMX19_06097 0.14 +1.1
277,947 - MPMX19_06097 0.14 +0.3
277,947 - MPMX19_06097 0.14 -1.2
277,947 - MPMX19_06097 0.14 -2.8
277,947 - MPMX19_06097 0.14 -1.0
277,947 - MPMX19_06097 0.14 -0.9
278,244 - MPMX19_06097 0.37 -0.0
278,244 - MPMX19_06097 0.37 -1.7
278,244 - MPMX19_06097 0.37 -0.6
278,244 - MPMX19_06097 0.37 -0.4
278,258 + MPMX19_06097 0.38 -1.2
278,303 + MPMX19_06097 0.41 -0.5
278,303 + MPMX19_06097 0.41 +0.7
278,303 + MPMX19_06097 0.41 +0.4
278,304 - MPMX19_06097 0.41 +0.1
278,304 - MPMX19_06097 0.41 -0.5
278,304 - MPMX19_06097 0.41 -0.9
278,304 - MPMX19_06097 0.41 -0.7
278,304 - MPMX19_06097 0.41 -0.1
278,304 - MPMX19_06097 0.41 -1.9
278,304 - MPMX19_06097 0.41 -1.2
278,324 + MPMX19_06097 0.43 +0.3
278,324 + MPMX19_06097 0.43 -2.2
278,324 + MPMX19_06097 0.43 -1.2
278,324 + MPMX19_06097 0.43 -1.2
278,324 + MPMX19_06097 0.43 +0.3
278,324 + MPMX19_06097 0.43 -0.5
278,324 + MPMX19_06097 0.43 -1.5
278,324 + MPMX19_06097 0.43 -1.1
278,324 + MPMX19_06097 0.43 +2.6
278,324 + MPMX19_06097 0.43 -0.0
278,324 + MPMX19_06097 0.43 -1.3
278,324 + MPMX19_06097 0.43 +0.7
278,324 + MPMX19_06097 0.43 -0.7
278,324 + MPMX19_06097 0.43 -1.2
278,324 + MPMX19_06097 0.43 -2.0
278,324 + MPMX19_06097 0.43 -0.2
278,324 + MPMX19_06097 0.43 -1.2
278,324 + MPMX19_06097 0.43 -0.8
278,324 + MPMX19_06097 0.43 -1.2
278,324 + MPMX19_06097 0.43 +0.7
278,324 + MPMX19_06097 0.43 -2.0
278,324 + MPMX19_06097 0.43 +1.1
278,324 + MPMX19_06097 0.43 +0.3
278,324 + MPMX19_06097 0.43 +0.7
278,324 + MPMX19_06097 0.43 -0.4
278,324 + MPMX19_06097 0.43 +0.4
278,324 + MPMX19_06097 0.43 -0.3
278,324 + MPMX19_06097 0.43 -0.5
278,325 - MPMX19_06097 0.43 +0.0
278,325 - MPMX19_06097 0.43 -0.1
278,325 - MPMX19_06097 0.43 -0.3
278,325 - MPMX19_06097 0.43 +0.0
278,325 - MPMX19_06097 0.43 +0.5
278,325 - MPMX19_06097 0.43 +0.1
278,325 - MPMX19_06097 0.43 +0.4
278,325 - MPMX19_06097 0.43 -1.1
278,325 - MPMX19_06097 0.43 -1.2
278,325 - MPMX19_06097 0.43 +0.0
278,325 - MPMX19_06097 0.43 -1.1
278,325 - MPMX19_06097 0.43 +0.4
278,325 - MPMX19_06097 0.43 -0.3
278,325 - MPMX19_06097 0.43 +1.8
278,325 - MPMX19_06097 0.43 -0.9
278,325 - MPMX19_06097 0.43 -0.4
278,325 - MPMX19_06097 0.43 -0.2
278,325 - MPMX19_06097 0.43 -2.1
278,441 + MPMX19_06097 0.52 +0.0
278,442 - MPMX19_06097 0.52 -0.5
278,442 - MPMX19_06097 0.52 +0.0
278,442 - MPMX19_06097 0.52 +0.1
278,442 - MPMX19_06097 0.52 -1.8
278,579 + MPMX19_06097 0.62 -0.7
278,579 + MPMX19_06097 0.62 +0.8
278,579 + MPMX19_06097 0.62 -0.5
278,579 + MPMX19_06097 0.62 -0.6
278,579 + MPMX19_06097 0.62 -1.1
278,580 - MPMX19_06097 0.62 -0.3
278,580 - MPMX19_06097 0.62 -0.3
278,580 - MPMX19_06097 0.62 +0.5
278,580 - MPMX19_06097 0.62 -0.0
278,591 + MPMX19_06097 0.63 +0.1
278,681 + MPMX19_06097 0.70 -1.1
278,681 + MPMX19_06097 0.70 -0.6
278,681 + MPMX19_06097 0.70 -1.7
278,681 + MPMX19_06097 0.70 -1.6
278,681 + MPMX19_06097 0.70 -1.2
278,681 + MPMX19_06097 0.70 +0.3
278,681 + MPMX19_06097 0.70 +0.5
278,681 + MPMX19_06097 0.70 +1.8
278,681 + MPMX19_06097 0.70 +1.4
278,681 + MPMX19_06097 0.70 -1.9
278,681 + MPMX19_06097 0.70 -0.4
278,681 + MPMX19_06097 0.70 +0.6
278,681 + MPMX19_06097 0.70 -1.1
278,681 + MPMX19_06097 0.70 -0.7
278,682 - MPMX19_06097 0.70 +0.2
278,682 - MPMX19_06097 0.70 -3.0
278,682 - MPMX19_06097 0.70 -0.6
278,682 - MPMX19_06097 0.70 +0.3
278,682 - MPMX19_06097 0.70 +0.3
278,682 - MPMX19_06097 0.70 +0.0
278,682 - MPMX19_06097 0.70 -0.1
278,682 - MPMX19_06097 0.70 -0.3
278,682 - MPMX19_06097 0.70 -1.2
278,682 - MPMX19_06097 0.70 -0.7
278,682 - MPMX19_06097 0.70 -0.9
278,729 + MPMX19_06097 0.74 +0.8
278,768 + MPMX19_06097 0.77 +0.8
278,768 + MPMX19_06097 0.77 +0.2
278,768 + MPMX19_06097 0.77 +0.9
278,768 + MPMX19_06097 0.77 -1.2
278,768 + MPMX19_06097 0.77 -0.9
278,768 + MPMX19_06097 0.77 -0.5
278,769 - MPMX19_06097 0.77 +0.4
278,769 - MPMX19_06097 0.77 -1.5
278,769 - MPMX19_06097 0.77 -0.5
278,769 - MPMX19_06097 0.77 -0.6
278,769 - MPMX19_06097 0.77 +2.1
278,769 - MPMX19_06097 0.77 -1.0
278,769 - MPMX19_06097 0.77 -1.8
278,769 - MPMX19_06097 0.77 -0.5
278,769 - MPMX19_06097 0.77 -0.6

Or see this region's nucleotide sequence