Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06088 and MPMX19_06089 overlap by 4 nucleotides MPMX19_06089 and MPMX19_06090 are separated by 174 nucleotides
MPMX19_06088: MPMX19_06088 - Sensor histidine kinase RcsC, at 263,417 to 267,214
_06088
MPMX19_06089: MPMX19_06089 - Regulatory protein LuxO, at 267,211 to 268,653
_06089
MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598
_06090
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.853 kb on + strand at 266.853 kb on + strand at 266.854 kb on - strand at 266.854 kb on - strand at 266.854 kb on - strand at 267.118 kb on + strand at 267.119 kb on - strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.299 kb on - strand at 267.576 kb on + strand, within MPMX19_06089 at 267.576 kb on + strand, within MPMX19_06089 at 267.576 kb on + strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.720 kb on - strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.164 kb on - strand, within MPMX19_06089 at 268.232 kb on + strand, within MPMX19_06089 at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.591 kb on - strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.727 kb on - strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 269.060 kb on + strand, within MPMX19_06090 at 269.135 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 266,502 + MPMX19_06088 0.81 -1.9 266,502 + MPMX19_06088 0.81 -0.3 266,502 + MPMX19_06088 0.81 -0.7 266,502 + MPMX19_06088 0.81 +1.1 266,503 - MPMX19_06088 0.81 -0.7 266,503 - MPMX19_06088 0.81 -1.4 266,503 - MPMX19_06088 0.81 -0.0 266,565 + MPMX19_06088 0.83 +0.8 266,565 + MPMX19_06088 0.83 -2.2 266,565 + MPMX19_06088 0.83 -0.4 266,610 + MPMX19_06088 0.84 +0.6 266,610 + MPMX19_06088 0.84 -0.0 266,610 + MPMX19_06088 0.84 +0.1 266,610 + MPMX19_06088 0.84 -1.8 266,610 + MPMX19_06088 0.84 -1.3 266,610 + MPMX19_06088 0.84 +0.1 266,610 + MPMX19_06088 0.84 +0.3 266,610 + MPMX19_06088 0.84 -0.6 266,610 + MPMX19_06088 0.84 +0.9 266,610 + MPMX19_06088 0.84 -0.2 266,610 + MPMX19_06088 0.84 -0.5 266,610 + MPMX19_06088 0.84 -0.0 266,610 + MPMX19_06088 0.84 -1.0 266,610 + MPMX19_06088 0.84 -0.4 266,610 + MPMX19_06088 0.84 -0.5 266,610 + MPMX19_06088 0.84 +0.3 266,610 + MPMX19_06088 0.84 -0.6 266,611 - MPMX19_06088 0.84 +0.2 266,611 - MPMX19_06088 0.84 -0.7 266,611 - MPMX19_06088 0.84 -1.4 266,611 - MPMX19_06088 0.84 +0.1 266,611 - MPMX19_06088 0.84 -0.2 266,611 - MPMX19_06088 0.84 -0.7 266,611 - MPMX19_06088 0.84 -1.0 266,611 - MPMX19_06088 0.84 -0.5 266,611 - MPMX19_06088 0.84 +1.3 266,611 - MPMX19_06088 0.84 -0.7 266,611 - MPMX19_06088 0.84 -2.2 266,611 - MPMX19_06088 0.84 -0.6 266,611 - MPMX19_06088 0.84 +0.6 266,611 - MPMX19_06088 0.84 -1.0 266,611 - MPMX19_06088 0.84 -0.6 266,611 - MPMX19_06088 0.84 -1.7 266,853 + -1.0 266,853 + -1.0 266,854 - +0.8 266,854 - -0.2 266,854 - +0.1 267,118 + -1.8 267,119 - +1.6 267,132 + -1.5 267,132 + -0.0 267,132 + +1.0 267,132 + -1.2 267,132 + -0.2 267,132 + -1.4 267,132 + -0.4 267,132 + +1.0 267,132 + -0.4 267,133 - +0.0 267,133 - -0.6 267,133 - +0.3 267,133 - -1.9 267,133 - -1.0 267,133 - -0.2 267,133 - +0.3 267,133 - -0.7 267,133 - +0.2 267,250 - +1.2 267,250 - +1.8 267,272 + -1.9 267,272 + -0.3 267,272 + -2.2 267,272 + -0.5 267,272 + -0.1 267,272 + +0.0 267,272 + +2.6 267,272 + +0.3 267,273 - -1.1 267,273 - -0.5 267,273 - +0.5 267,273 - +0.4 267,273 - +0.8 267,298 + -1.2 267,298 + -2.3 267,298 + -1.2 267,298 + +1.6 267,299 - -1.3 267,576 + MPMX19_06089 0.25 -0.5 267,576 + MPMX19_06089 0.25 -1.5 267,576 + MPMX19_06089 0.25 +0.8 267,577 - MPMX19_06089 0.25 +0.8 267,577 - MPMX19_06089 0.25 +0.5 267,577 - MPMX19_06089 0.25 -2.0 267,630 - MPMX19_06089 0.29 +0.4 267,630 - MPMX19_06089 0.29 -0.1 267,630 - MPMX19_06089 0.29 +1.5 267,630 - MPMX19_06089 0.29 -0.3 267,719 + MPMX19_06089 0.35 -0.5 267,719 + MPMX19_06089 0.35 +0.8 267,719 + MPMX19_06089 0.35 -1.1 267,720 - MPMX19_06089 0.35 -0.6 267,722 + MPMX19_06089 0.35 -1.2 267,722 + MPMX19_06089 0.35 -1.2 267,722 + MPMX19_06089 0.35 -0.7 267,722 + MPMX19_06089 0.35 -1.7 267,722 + MPMX19_06089 0.35 +1.5 267,722 + MPMX19_06089 0.35 +0.4 267,722 + MPMX19_06089 0.35 -1.6 267,722 + MPMX19_06089 0.35 -0.7 267,722 + MPMX19_06089 0.35 -0.3 267,722 + MPMX19_06089 0.35 +1.0 267,722 + MPMX19_06089 0.35 -0.1 267,722 + MPMX19_06089 0.35 +0.3 267,722 + MPMX19_06089 0.35 -0.4 267,722 + MPMX19_06089 0.35 -1.7 267,722 + MPMX19_06089 0.35 -0.6 267,722 + MPMX19_06089 0.35 -0.3 267,723 - MPMX19_06089 0.35 +0.6 267,723 - MPMX19_06089 0.35 -1.7 267,723 - MPMX19_06089 0.35 -1.3 267,723 - MPMX19_06089 0.35 +0.3 267,723 - MPMX19_06089 0.35 -1.1 267,723 - MPMX19_06089 0.35 -0.9 267,723 - MPMX19_06089 0.35 -0.7 267,723 - MPMX19_06089 0.35 -0.9 267,723 - MPMX19_06089 0.35 -0.8 267,723 - MPMX19_06089 0.35 -0.2 267,723 - MPMX19_06089 0.35 -0.7 267,723 - MPMX19_06089 0.35 +0.5 267,723 - MPMX19_06089 0.35 -0.7 267,723 - MPMX19_06089 0.35 -1.5 267,723 - MPMX19_06089 0.35 +0.3 268,163 + MPMX19_06089 0.66 -0.0 268,163 + MPMX19_06089 0.66 -0.9 268,163 + MPMX19_06089 0.66 -1.5 268,163 + MPMX19_06089 0.66 -0.5 268,164 - MPMX19_06089 0.66 -0.9 268,232 + MPMX19_06089 0.71 -1.0 268,568 + -1.2 268,568 + +0.8 268,568 + -0.0 268,568 + -0.6 268,568 + +0.3 268,568 + -0.3 268,568 + -0.6 268,568 + +0.1 268,568 + +0.4 268,569 - -1.9 268,569 - -0.2 268,569 - -1.2 268,569 - -1.0 268,569 - -1.3 268,569 - -0.4 268,569 - -0.7 268,569 - -0.7 268,569 - -1.1 268,569 - -0.0 268,590 + -0.4 268,591 - +0.7 268,591 - -1.2 268,726 + -0.0 268,726 + -0.5 268,726 + -1.2 268,726 + -0.2 268,726 + +0.6 268,726 + -1.1 268,726 + -0.1 268,727 - -0.2 268,772 + -1.1 268,772 + -2.2 268,772 + +0.1 268,772 + -0.7 268,772 + -1.1 268,772 + -0.6 268,772 + -1.6 268,772 + +1.1 268,772 + -0.9 268,772 + -0.0 268,772 + -1.0 268,772 + +0.3 268,772 + -0.1 268,772 + -1.3 268,772 + -0.3 268,772 + -1.9 268,772 + -0.6 268,772 + -2.3 268,772 + -2.5 268,773 - -0.6 268,773 - -1.0 268,773 - -0.8 268,773 - -0.5 268,773 - -0.3 268,773 - +1.5 268,773 - -1.2 268,773 - -1.1 268,773 - -0.9 268,773 - +0.2 268,773 - -0.8 268,773 - -0.2 268,773 - -0.4 268,773 - +0.8 268,773 - -0.7 268,775 + +0.3 268,775 + +0.8 268,775 + -1.0 268,775 + -0.3 268,775 + +0.6 268,775 + +0.7 268,775 + -0.3 268,775 + +0.8 268,775 + -0.8 268,775 + -1.5 268,775 + +0.1 268,775 + -1.5 268,775 + +0.7 268,775 + +0.3 268,775 + +2.3 268,776 - -0.7 268,776 - -1.6 268,776 - -1.2 268,776 - -2.8 268,776 - -1.0 268,776 - +0.2 268,776 - -0.7 268,776 - +0.7 268,776 - -1.6 268,776 - -2.3 268,776 - -0.5 268,776 - -0.3 268,776 - -1.3 268,776 - -0.4 268,776 - -0.7 268,776 - +0.3 268,776 - +0.3 268,776 - -0.7 269,060 + MPMX19_06090 0.30 +0.1 269,135 + MPMX19_06090 0.40 +0.8 269,287 + MPMX19_06090 0.60 -2.3 269,287 + MPMX19_06090 0.60 +1.0 269,310 - MPMX19_06090 0.63 -1.5 269,310 - MPMX19_06090 0.63 -1.1 269,642 - +0.4 269,642 - -0.2 269,642 - +1.3 269,642 - +0.2 269,642 - -1.5 269,642 - +0.2
Or see this region's nucleotide sequence