Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06060

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06059 and MPMX19_06060 are separated by 39 nucleotidesMPMX19_06060 and MPMX19_06061 are separated by 72 nucleotides MPMX19_06059: MPMX19_06059 - Mannitol 2-dehydrogenase, at 224,768 to 226,282 _06059 MPMX19_06060: MPMX19_06060 - Starvation-sensing protein RspB, at 226,322 to 227,350 _06060 MPMX19_06061: MPMX19_06061 - Solute-binding protein, at 227,423 to 228,448 _06061 Position (kb) 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.672 kb on - strand, within MPMX19_06059at 225.672 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.732 kb on - strand, within MPMX19_06059at 225.732 kb on - strand, within MPMX19_06059at 225.744 kb on - strand, within MPMX19_06059at 225.744 kb on - strand, within MPMX19_06059at 225.851 kb on - strand, within MPMX19_06059at 225.851 kb on - strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.958 kb on - strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.309 kb on - strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.316 kb on + strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.487 kb on + strand, within MPMX19_06060at 226.488 kb on - strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 227.100 kb on + strand, within MPMX19_06060at 227.100 kb on + strand, within MPMX19_06060at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.795 kb on + strand, within MPMX19_06061at 227.900 kb on + strand, within MPMX19_06061at 227.900 kb on + strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 227.901 kb on - strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.131 kb on + strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.132 kb on - strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.146 kb on + strand, within MPMX19_06061at 228.147 kb on - strand, within MPMX19_06061at 228.147 kb on - strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.182 kb on + strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061at 228.183 kb on - strand, within MPMX19_06061

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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225,671 + MPMX19_06059 0.60 +0.7
225,671 + MPMX19_06059 0.60 -0.0
225,671 + MPMX19_06059 0.60 +0.3
225,671 + MPMX19_06059 0.60 -0.4
225,671 + MPMX19_06059 0.60 -2.5
225,672 - MPMX19_06059 0.60 -1.2
225,672 - MPMX19_06059 0.60 -0.5
225,723 - MPMX19_06059 0.63 -0.1
225,723 - MPMX19_06059 0.63 +0.7
225,723 - MPMX19_06059 0.63 -1.7
225,732 - MPMX19_06059 0.64 -0.0
225,732 - MPMX19_06059 0.64 -0.9
225,744 - MPMX19_06059 0.64 -0.2
225,744 - MPMX19_06059 0.64 +0.1
225,851 - MPMX19_06059 0.71 -0.8
225,851 - MPMX19_06059 0.71 +0.1
225,860 + MPMX19_06059 0.72 +0.8
225,860 + MPMX19_06059 0.72 -0.7
225,860 + MPMX19_06059 0.72 +0.3
225,860 + MPMX19_06059 0.72 +0.6
225,860 + MPMX19_06059 0.72 +0.3
225,860 + MPMX19_06059 0.72 +0.0
225,860 + MPMX19_06059 0.72 +0.3
225,860 + MPMX19_06059 0.72 -0.5
225,860 + MPMX19_06059 0.72 -0.7
225,860 + MPMX19_06059 0.72 +0.0
225,860 + MPMX19_06059 0.72 +0.3
225,860 + MPMX19_06059 0.72 -0.7
225,860 + MPMX19_06059 0.72 -0.4
225,860 + MPMX19_06059 0.72 -1.0
225,860 + MPMX19_06059 0.72 -1.0
225,860 + MPMX19_06059 0.72 -1.1
225,861 - MPMX19_06059 0.72 -1.0
225,861 - MPMX19_06059 0.72 +0.9
225,861 - MPMX19_06059 0.72 -0.6
225,861 - MPMX19_06059 0.72 -0.1
225,861 - MPMX19_06059 0.72 -2.5
225,861 - MPMX19_06059 0.72 -1.8
225,861 - MPMX19_06059 0.72 -0.2
225,861 - MPMX19_06059 0.72 -1.0
225,861 - MPMX19_06059 0.72 -0.2
225,861 - MPMX19_06059 0.72 -0.5
225,861 - MPMX19_06059 0.72 -0.2
225,861 - MPMX19_06059 0.72 +0.8
225,861 - MPMX19_06059 0.72 -1.1
225,861 - MPMX19_06059 0.72 -0.3
225,861 - MPMX19_06059 0.72 -1.0
225,958 - MPMX19_06059 0.79 -0.3
226,037 + MPMX19_06059 0.84 -2.1
226,037 + MPMX19_06059 0.84 -0.4
226,037 + MPMX19_06059 0.84 +0.2
226,037 + MPMX19_06059 0.84 -0.0
226,037 + MPMX19_06059 0.84 -0.4
226,038 - MPMX19_06059 0.84 -1.1
226,038 - MPMX19_06059 0.84 -0.1
226,038 - MPMX19_06059 0.84 +0.6
226,038 - MPMX19_06059 0.84 +0.8
226,309 - +0.6
226,315 + -1.1
226,315 + -0.7
226,315 + +1.1
226,315 + +0.7
226,316 + -1.2
226,316 - -1.9
226,316 - -0.1
226,316 - -0.4
226,316 - -0.1
226,316 - +0.6
226,316 - -0.5
226,460 + MPMX19_06060 0.13 -0.9
226,460 + MPMX19_06060 0.13 -0.6
226,460 + MPMX19_06060 0.13 -1.7
226,460 + MPMX19_06060 0.13 -0.7
226,460 + MPMX19_06060 0.13 +0.2
226,460 + MPMX19_06060 0.13 +0.0
226,460 + MPMX19_06060 0.13 +0.1
226,460 + MPMX19_06060 0.13 -0.9
226,460 + MPMX19_06060 0.13 -0.9
226,460 + MPMX19_06060 0.13 +0.5
226,460 + MPMX19_06060 0.13 +1.3
226,460 + MPMX19_06060 0.13 -1.8
226,460 + MPMX19_06060 0.13 +0.4
226,460 + MPMX19_06060 0.13 +0.9
226,460 + MPMX19_06060 0.13 -0.6
226,460 + MPMX19_06060 0.13 -0.3
226,461 - MPMX19_06060 0.14 -1.0
226,461 - MPMX19_06060 0.14 -1.0
226,461 - MPMX19_06060 0.14 -1.6
226,461 - MPMX19_06060 0.14 +0.8
226,461 - MPMX19_06060 0.14 +0.7
226,461 - MPMX19_06060 0.14 -0.1
226,461 - MPMX19_06060 0.14 -0.4
226,461 - MPMX19_06060 0.14 -0.1
226,461 - MPMX19_06060 0.14 +1.3
226,461 - MPMX19_06060 0.14 +0.1
226,461 - MPMX19_06060 0.14 +0.9
226,461 - MPMX19_06060 0.14 -0.5
226,461 - MPMX19_06060 0.14 -1.4
226,461 - MPMX19_06060 0.14 +0.9
226,487 + MPMX19_06060 0.16 +0.4
226,488 - MPMX19_06060 0.16 +0.2
226,607 + MPMX19_06060 0.28 +0.6
226,607 + MPMX19_06060 0.28 +0.8
226,607 + MPMX19_06060 0.28 -1.5
226,607 + MPMX19_06060 0.28 +1.1
226,607 + MPMX19_06060 0.28 -0.3
226,607 + MPMX19_06060 0.28 -0.1
226,607 + MPMX19_06060 0.28 +0.7
226,607 + MPMX19_06060 0.28 -0.1
226,608 - MPMX19_06060 0.28 -0.3
226,608 - MPMX19_06060 0.28 -0.2
226,608 - MPMX19_06060 0.28 +0.2
226,608 - MPMX19_06060 0.28 -0.7
226,608 - MPMX19_06060 0.28 -0.8
226,608 - MPMX19_06060 0.28 -0.5
226,608 - MPMX19_06060 0.28 -0.5
226,608 - MPMX19_06060 0.28 -0.7
226,829 + MPMX19_06060 0.49 -1.2
226,829 + MPMX19_06060 0.49 -2.3
226,829 + MPMX19_06060 0.49 -0.2
226,829 + MPMX19_06060 0.49 -1.5
226,829 + MPMX19_06060 0.49 +0.8
226,829 + MPMX19_06060 0.49 -0.3
226,830 - MPMX19_06060 0.49 +1.4
226,830 - MPMX19_06060 0.49 -1.2
226,830 - MPMX19_06060 0.49 -0.2
226,830 - MPMX19_06060 0.49 -1.0
227,100 + MPMX19_06060 0.76 -0.7
227,100 + MPMX19_06060 0.76 -1.6
227,795 + MPMX19_06061 0.36 +0.2
227,795 + MPMX19_06061 0.36 -1.3
227,795 + MPMX19_06061 0.36 -1.0
227,795 + MPMX19_06061 0.36 +0.3
227,900 + MPMX19_06061 0.46 -0.2
227,900 + MPMX19_06061 0.46 +0.9
227,901 - MPMX19_06061 0.47 +1.3
227,901 - MPMX19_06061 0.47 -0.0
227,901 - MPMX19_06061 0.47 -0.6
227,901 - MPMX19_06061 0.47 +0.9
228,131 + MPMX19_06061 0.69 -0.3
228,131 + MPMX19_06061 0.69 -0.7
228,131 + MPMX19_06061 0.69 +0.3
228,131 + MPMX19_06061 0.69 +1.3
228,131 + MPMX19_06061 0.69 -1.3
228,132 - MPMX19_06061 0.69 +0.0
228,132 - MPMX19_06061 0.69 -1.7
228,132 - MPMX19_06061 0.69 +0.4
228,146 + MPMX19_06061 0.70 -0.1
228,146 + MPMX19_06061 0.70 -0.0
228,146 + MPMX19_06061 0.70 -0.3
228,146 + MPMX19_06061 0.70 -1.1
228,146 + MPMX19_06061 0.70 -0.4
228,147 - MPMX19_06061 0.71 +1.3
228,147 - MPMX19_06061 0.71 +2.2
228,182 + MPMX19_06061 0.74 +0.2
228,182 + MPMX19_06061 0.74 -1.7
228,182 + MPMX19_06061 0.74 -1.3
228,182 + MPMX19_06061 0.74 +0.5
228,182 + MPMX19_06061 0.74 -0.6
228,182 + MPMX19_06061 0.74 -0.8
228,183 - MPMX19_06061 0.74 +0.2
228,183 - MPMX19_06061 0.74 +0.3
228,183 - MPMX19_06061 0.74 -0.5
228,183 - MPMX19_06061 0.74 +0.2
228,183 - MPMX19_06061 0.74 -1.1
228,183 - MPMX19_06061 0.74 -1.7
228,183 - MPMX19_06061 0.74 -0.5
228,183 - MPMX19_06061 0.74 -1.4

Or see this region's nucleotide sequence