Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06029 and MPMX19_06030 are separated by 38 nucleotides MPMX19_06030 and MPMX19_06031 are separated by 214 nucleotides MPMX19_06031 and MPMX19_06032 are separated by 191 nucleotides
MPMX19_06029: MPMX19_06029 - Hydroxyacylglutathione hydrolase GloB, at 181,774 to 182,541
_06029
MPMX19_06030: MPMX19_06030 - putative GST-like protein YibF, at 182,580 to 183,185
_06030
MPMX19_06031: MPMX19_06031 - hypothetical protein, at 183,400 to 186,078
_06031
MPMX19_06032: MPMX19_06032 - Phosphate-binding protein PstS, at 186,270 to 187,346
_06032
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.405 kb on + strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.406 kb on - strand, within MPMX19_06029 at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.579 kb on + strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.580 kb on - strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.614 kb on - strand at 182.794 kb on - strand, within MPMX19_06030 at 182.794 kb on - strand, within MPMX19_06030 at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.183 kb on + strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.184 kb on - strand at 183.226 kb on + strand at 183.257 kb on + strand at 183.277 kb on + strand at 183.277 kb on + strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.278 kb on - strand at 183.437 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.468 kb on + strand at 183.469 kb on - strand at 183.469 kb on - strand at 183.480 kb on + strand at 183.480 kb on + strand at 183.480 kb on + strand at 183.481 kb on - strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.583 kb on + strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.584 kb on - strand at 183.807 kb on + strand, within MPMX19_06031 at 183.807 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.318 kb on + strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.319 kb on - strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.552 kb on + strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.553 kb on - strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.810 kb on + strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 184.811 kb on - strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.014 kb on + strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 185.015 kb on - strand, within MPMX19_06031 at 186.139 kb on - strand at 186.139 kb on - strand at 186.170 kb on - strand at 186.198 kb on - strand at 186.198 kb on - strand at 186.254 kb on + strand at 186.265 kb on + strand at 186.265 kb on + strand at 186.408 kb on + strand, within MPMX19_06032 at 186.408 kb on + strand, within MPMX19_06032 at 186.408 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.429 kb on + strand, within MPMX19_06032 at 186.430 kb on - strand, within MPMX19_06032 at 186.459 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.672 kb on + strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.673 kb on - strand, within MPMX19_06032 at 186.762 kb on + strand, within MPMX19_06032 at 186.762 kb on + strand, within MPMX19_06032 at 186.763 kb on - strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.804 kb on + strand, within MPMX19_06032 at 186.805 kb on - strand, within MPMX19_06032 at 186.939 kb on + strand, within MPMX19_06032 at 186.954 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.077 kb on + strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032 at 187.078 kb on - strand, within MPMX19_06032
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 182,405 + MPMX19_06029 0.82 -2.0 182,405 + MPMX19_06029 0.82 +0.3 182,405 + MPMX19_06029 0.82 -1.0 182,405 + MPMX19_06029 0.82 -1.3 182,405 + MPMX19_06029 0.82 +0.4 182,405 + MPMX19_06029 0.82 +0.3 182,405 + MPMX19_06029 0.82 -1.0 182,405 + MPMX19_06029 0.82 -0.9 182,405 + MPMX19_06029 0.82 -2.1 182,405 + MPMX19_06029 0.82 +1.6 182,405 + MPMX19_06029 0.82 +0.8 182,405 + MPMX19_06029 0.82 -1.3 182,405 + MPMX19_06029 0.82 -1.6 182,405 + MPMX19_06029 0.82 -0.3 182,405 + MPMX19_06029 0.82 -1.4 182,405 + MPMX19_06029 0.82 -0.7 182,406 - MPMX19_06029 0.82 -2.3 182,406 - MPMX19_06029 0.82 +0.0 182,406 - MPMX19_06029 0.82 +0.5 182,406 - MPMX19_06029 0.82 +1.5 182,406 - MPMX19_06029 0.82 -0.3 182,406 - MPMX19_06029 0.82 -1.1 182,406 - MPMX19_06029 0.82 -0.7 182,406 - MPMX19_06029 0.82 -0.5 182,406 - MPMX19_06029 0.82 -0.1 182,406 - MPMX19_06029 0.82 +0.4 182,406 - MPMX19_06029 0.82 -0.0 182,406 - MPMX19_06029 0.82 -1.6 182,406 - MPMX19_06029 0.82 +0.5 182,406 - MPMX19_06029 0.82 -1.9 182,579 + -0.3 182,579 + -0.7 182,579 + +0.5 182,579 + +0.9 182,579 + -1.8 182,579 + -0.2 182,579 + -0.2 182,579 + +0.1 182,580 - -2.1 182,580 - +0.3 182,580 - -0.1 182,580 - -0.8 182,580 - -0.5 182,580 - -0.3 182,613 + +1.1 182,613 + +0.2 182,613 + -1.3 182,614 - -0.1 182,614 - -0.5 182,614 - -0.7 182,614 - -0.1 182,614 - -1.6 182,794 - MPMX19_06030 0.35 -0.2 182,794 - MPMX19_06030 0.35 +0.9 183,183 + +0.1 183,183 + -1.1 183,183 + -1.2 183,183 + +1.5 183,183 + +0.9 183,183 + -0.6 183,183 + +0.4 183,184 - -2.2 183,184 - +0.3 183,184 - +0.9 183,184 - +1.0 183,226 + -0.1 183,257 + -1.0 183,277 + -0.3 183,277 + -2.3 183,278 - +0.1 183,278 - -1.1 183,278 - -0.5 183,278 - -1.1 183,278 - -0.5 183,437 + -0.3 183,468 + -0.3 183,468 + +0.9 183,468 + +0.6 183,468 + -1.6 183,468 + +0.3 183,468 + -0.0 183,468 + -1.5 183,469 - +0.6 183,469 - -0.0 183,480 + +0.1 183,480 + +0.1 183,480 + -1.4 183,481 - +0.1 183,583 + +0.3 183,583 + -0.5 183,583 + -0.1 183,583 + -0.1 183,583 + -1.6 183,584 - -1.8 183,584 - -1.4 183,584 - -1.4 183,584 - -1.3 183,807 + MPMX19_06031 0.15 -0.5 183,807 + MPMX19_06031 0.15 +0.9 184,318 + MPMX19_06031 0.34 +0.9 184,318 + MPMX19_06031 0.34 -1.3 184,318 + MPMX19_06031 0.34 -0.3 184,319 - MPMX19_06031 0.34 -1.6 184,319 - MPMX19_06031 0.34 +1.7 184,319 - MPMX19_06031 0.34 -0.7 184,319 - MPMX19_06031 0.34 -0.7 184,552 + MPMX19_06031 0.43 +0.1 184,552 + MPMX19_06031 0.43 -1.2 184,552 + MPMX19_06031 0.43 -1.2 184,552 + MPMX19_06031 0.43 +0.8 184,552 + MPMX19_06031 0.43 -1.1 184,552 + MPMX19_06031 0.43 -0.0 184,552 + MPMX19_06031 0.43 -2.3 184,552 + MPMX19_06031 0.43 -0.7 184,552 + MPMX19_06031 0.43 -1.2 184,552 + MPMX19_06031 0.43 +0.2 184,553 - MPMX19_06031 0.43 -0.5 184,553 - MPMX19_06031 0.43 -0.6 184,553 - MPMX19_06031 0.43 -0.1 184,553 - MPMX19_06031 0.43 -0.7 184,553 - MPMX19_06031 0.43 -0.6 184,810 + MPMX19_06031 0.53 -0.8 184,810 + MPMX19_06031 0.53 -0.8 184,810 + MPMX19_06031 0.53 -1.6 184,810 + MPMX19_06031 0.53 -0.1 184,810 + MPMX19_06031 0.53 -0.1 184,810 + MPMX19_06031 0.53 +0.0 184,811 - MPMX19_06031 0.53 -0.9 184,811 - MPMX19_06031 0.53 -0.7 184,811 - MPMX19_06031 0.53 +0.3 184,811 - MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 -1.8 184,811 - MPMX19_06031 0.53 -2.3 184,811 - MPMX19_06031 0.53 -1.1 184,811 - MPMX19_06031 0.53 -1.2 184,811 - MPMX19_06031 0.53 -0.1 185,014 + MPMX19_06031 0.60 +0.6 185,014 + MPMX19_06031 0.60 -0.1 185,014 + MPMX19_06031 0.60 -1.4 185,014 + MPMX19_06031 0.60 -2.3 185,015 - MPMX19_06031 0.60 -1.0 185,015 - MPMX19_06031 0.60 -1.6 185,015 - MPMX19_06031 0.60 +0.6 185,015 - MPMX19_06031 0.60 -0.3 185,015 - MPMX19_06031 0.60 +0.5 186,139 - +0.3 186,139 - -0.3 186,170 - +0.4 186,198 - -1.5 186,198 - -0.4 186,254 + -0.7 186,265 + +0.1 186,265 + -1.6 186,408 + MPMX19_06032 0.13 -1.1 186,408 + MPMX19_06032 0.13 +0.3 186,408 + MPMX19_06032 0.13 -0.7 186,429 + MPMX19_06032 0.15 +0.3 186,429 + MPMX19_06032 0.15 +0.5 186,429 + MPMX19_06032 0.15 +0.3 186,429 + MPMX19_06032 0.15 +0.7 186,430 - MPMX19_06032 0.15 -0.9 186,459 + MPMX19_06032 0.18 +1.9 186,672 + MPMX19_06032 0.37 +0.7 186,672 + MPMX19_06032 0.37 -0.9 186,672 + MPMX19_06032 0.37 +0.5 186,672 + MPMX19_06032 0.37 -0.9 186,672 + MPMX19_06032 0.37 -1.3 186,672 + MPMX19_06032 0.37 -1.9 186,672 + MPMX19_06032 0.37 -1.3 186,672 + MPMX19_06032 0.37 -0.6 186,672 + MPMX19_06032 0.37 +0.3 186,672 + MPMX19_06032 0.37 -0.6 186,673 - MPMX19_06032 0.37 -2.2 186,673 - MPMX19_06032 0.37 -1.3 186,673 - MPMX19_06032 0.37 -0.7 186,673 - MPMX19_06032 0.37 +1.2 186,673 - MPMX19_06032 0.37 -0.3 186,673 - MPMX19_06032 0.37 +1.1 186,673 - MPMX19_06032 0.37 +0.1 186,673 - MPMX19_06032 0.37 -0.6 186,673 - MPMX19_06032 0.37 -0.0 186,762 + MPMX19_06032 0.46 -0.9 186,762 + MPMX19_06032 0.46 +1.6 186,763 - MPMX19_06032 0.46 +0.2 186,804 + MPMX19_06032 0.50 +0.1 186,804 + MPMX19_06032 0.50 -0.1 186,804 + MPMX19_06032 0.50 +0.9 186,805 - MPMX19_06032 0.50 -1.0 186,939 + MPMX19_06032 0.62 +0.3 186,954 + MPMX19_06032 0.64 +0.6 187,077 + MPMX19_06032 0.75 +0.4 187,077 + MPMX19_06032 0.75 +0.3 187,077 + MPMX19_06032 0.75 +0.6 187,078 - MPMX19_06032 0.75 +1.1 187,078 - MPMX19_06032 0.75 -0.5 187,078 - MPMX19_06032 0.75 +0.3 187,078 - MPMX19_06032 0.75 -1.2 187,078 - MPMX19_06032 0.75 -0.7 187,078 - MPMX19_06032 0.75 +0.1
Or see this region's nucleotide sequence