Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05991

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05989 and MPMX19_05990 are separated by 109 nucleotidesMPMX19_05990 and MPMX19_05991 overlap by 4 nucleotidesMPMX19_05991 and MPMX19_05992 overlap by 4 nucleotidesMPMX19_05992 and MPMX19_05993 are separated by 101 nucleotidesMPMX19_05993 and MPMX19_05994 are separated by 169 nucleotides MPMX19_05989: MPMX19_05989 - HTH-type transcriptional regulator HdfR, at 144,861 to 145,775 _05989 MPMX19_05990: MPMX19_05990 - hypothetical protein, at 145,885 to 146,286 _05990 MPMX19_05991: MPMX19_05991 - hypothetical protein, at 146,283 to 146,717 _05991 MPMX19_05992: MPMX19_05992 - hypothetical protein, at 146,714 to 147,280 _05992 MPMX19_05993: MPMX19_05993 - tRNA-Tyr, at 147,382 to 147,467 _05993 MPMX19_05994: MPMX19_05994 - hypothetical protein, at 147,637 to 148,494 _05994 Position (kb) 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.833 kb on + strandat 145.834 kb on - strandat 145.834 kb on - strandat 145.930 kb on + strand, within MPMX19_05990at 145.930 kb on + strand, within MPMX19_05990at 145.930 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.141 kb on - strand, within MPMX19_05990at 146.141 kb on - strand, within MPMX19_05990at 146.292 kb on + strandat 146.293 kb on - strandat 146.293 kb on - strandat 146.450 kb on + strand, within MPMX19_05991at 146.450 kb on + strand, within MPMX19_05991at 146.451 kb on - strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.753 kb on + strandat 146.753 kb on + strandat 146.753 kb on + strandat 146.754 kb on - strandat 146.834 kb on + strand, within MPMX19_05992at 146.834 kb on + strand, within MPMX19_05992at 146.834 kb on + strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.835 kb on - strand, within MPMX19_05992at 146.885 kb on + strand, within MPMX19_05992at 146.885 kb on + strand, within MPMX19_05992at 146.885 kb on + strand, within MPMX19_05992at 146.885 kb on + strand, within MPMX19_05992at 146.886 kb on - strand, within MPMX19_05992at 146.886 kb on - strand, within MPMX19_05992at 146.886 kb on - strand, within MPMX19_05992at 146.886 kb on - strand, within MPMX19_05992at 146.886 kb on - strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.897 kb on + strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 146.898 kb on - strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.041 kb on + strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.042 kb on - strand, within MPMX19_05992at 147.074 kb on + strand, within MPMX19_05992at 147.074 kb on + strand, within MPMX19_05992at 147.074 kb on + strand, within MPMX19_05992at 147.075 kb on - strand, within MPMX19_05992at 147.242 kb on + strandat 147.243 kb on - strandat 147.243 kb on - strandat 147.243 kb on - strandat 147.243 kb on - strandat 147.243 kb on - strandat 147.278 kb on + strandat 147.279 kb on - strandat 147.310 kb on + strandat 147.311 kb on - strandat 147.311 kb on - strandat 147.447 kb on + strand, within MPMX19_05993at 147.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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145,561 + MPMX19_05989 0.77 -0.5
145,561 + MPMX19_05989 0.77 -0.6
145,561 + MPMX19_05989 0.77 +1.9
145,561 + MPMX19_05989 0.77 +2.6
145,562 - MPMX19_05989 0.77 +0.1
145,562 - MPMX19_05989 0.77 -1.8
145,562 - MPMX19_05989 0.77 +1.3
145,562 - MPMX19_05989 0.77 +0.6
145,833 + -0.8
145,834 - -0.6
145,834 - +0.4
145,930 + MPMX19_05990 0.11 -0.7
145,930 + MPMX19_05990 0.11 +0.7
145,930 + MPMX19_05990 0.11 +0.5
146,053 + MPMX19_05990 0.42 -0.6
146,053 + MPMX19_05990 0.42 -0.3
146,053 + MPMX19_05990 0.42 +0.4
146,053 + MPMX19_05990 0.42 +0.3
146,053 + MPMX19_05990 0.42 -1.2
146,053 + MPMX19_05990 0.42 -0.8
146,054 - MPMX19_05990 0.42 +2.6
146,054 - MPMX19_05990 0.42 -0.1
146,054 - MPMX19_05990 0.42 -0.9
146,054 - MPMX19_05990 0.42 +0.2
146,054 - MPMX19_05990 0.42 -1.1
146,054 - MPMX19_05990 0.42 +0.6
146,140 + MPMX19_05990 0.63 +0.5
146,140 + MPMX19_05990 0.63 +0.4
146,140 + MPMX19_05990 0.63 -0.5
146,141 - MPMX19_05990 0.64 -0.4
146,141 - MPMX19_05990 0.64 +0.5
146,292 + -1.0
146,293 - +0.2
146,293 - +1.0
146,450 + MPMX19_05991 0.38 -0.9
146,450 + MPMX19_05991 0.38 +0.1
146,451 - MPMX19_05991 0.39 -1.7
146,637 + MPMX19_05991 0.81 -0.5
146,637 + MPMX19_05991 0.81 -1.7
146,637 + MPMX19_05991 0.81 -1.4
146,637 + MPMX19_05991 0.81 -0.9
146,637 + MPMX19_05991 0.81 -1.6
146,637 + MPMX19_05991 0.81 +0.3
146,637 + MPMX19_05991 0.81 +0.9
146,637 + MPMX19_05991 0.81 -1.3
146,637 + MPMX19_05991 0.81 -0.3
146,637 + MPMX19_05991 0.81 +0.1
146,637 + MPMX19_05991 0.81 +0.3
146,637 + MPMX19_05991 0.81 -0.2
146,637 + MPMX19_05991 0.81 +1.9
146,637 + MPMX19_05991 0.81 -1.0
146,637 + MPMX19_05991 0.81 -1.4
146,637 + MPMX19_05991 0.81 +0.7
146,637 + MPMX19_05991 0.81 -0.9
146,637 + MPMX19_05991 0.81 -1.5
146,637 + MPMX19_05991 0.81 -0.0
146,637 + MPMX19_05991 0.81 -0.7
146,637 + MPMX19_05991 0.81 -1.6
146,637 + MPMX19_05991 0.81 -0.2
146,638 - MPMX19_05991 0.82 -0.3
146,638 - MPMX19_05991 0.82 +0.5
146,638 - MPMX19_05991 0.82 -0.3
146,638 - MPMX19_05991 0.82 +0.1
146,638 - MPMX19_05991 0.82 +0.9
146,638 - MPMX19_05991 0.82 -0.0
146,638 - MPMX19_05991 0.82 -0.2
146,638 - MPMX19_05991 0.82 -2.0
146,638 - MPMX19_05991 0.82 -0.8
146,638 - MPMX19_05991 0.82 -1.2
146,638 - MPMX19_05991 0.82 -1.7
146,638 - MPMX19_05991 0.82 +0.4
146,638 - MPMX19_05991 0.82 -0.8
146,638 - MPMX19_05991 0.82 +0.1
146,638 - MPMX19_05991 0.82 -1.1
146,638 - MPMX19_05991 0.82 -0.4
146,638 - MPMX19_05991 0.82 -0.5
146,638 - MPMX19_05991 0.82 -0.4
146,638 - MPMX19_05991 0.82 -0.7
146,638 - MPMX19_05991 0.82 -1.1
146,638 - MPMX19_05991 0.82 -1.2
146,638 - MPMX19_05991 0.82 +0.5
146,638 - MPMX19_05991 0.82 -1.5
146,638 - MPMX19_05991 0.82 +1.0
146,729 + -0.1
146,729 + -1.5
146,729 + -0.9
146,729 + -0.1
146,729 + -1.8
146,729 + +1.2
146,729 + -1.5
146,729 + -0.9
146,729 + +0.1
146,729 + -1.2
146,730 - -1.1
146,730 - +0.1
146,730 - -1.4
146,730 - -1.5
146,730 - +0.3
146,730 - -0.6
146,730 - +0.1
146,730 - -0.0
146,730 - -1.0
146,730 - -2.0
146,730 - -0.0
146,730 - -0.8
146,730 - -0.3
146,730 - +0.2
146,730 - -1.5
146,730 - -0.9
146,753 + -1.6
146,753 + -0.2
146,753 + -2.4
146,754 - -0.5
146,834 + MPMX19_05992 0.21 +0.5
146,834 + MPMX19_05992 0.21 -1.3
146,834 + MPMX19_05992 0.21 +0.5
146,835 - MPMX19_05992 0.21 -0.8
146,835 - MPMX19_05992 0.21 +2.1
146,835 - MPMX19_05992 0.21 -0.1
146,835 - MPMX19_05992 0.21 -1.1
146,835 - MPMX19_05992 0.21 -0.5
146,835 - MPMX19_05992 0.21 -0.3
146,885 + MPMX19_05992 0.30 -0.9
146,885 + MPMX19_05992 0.30 -0.6
146,885 + MPMX19_05992 0.30 -0.9
146,885 + MPMX19_05992 0.30 +1.5
146,886 - MPMX19_05992 0.30 -1.5
146,886 - MPMX19_05992 0.30 -1.1
146,886 - MPMX19_05992 0.30 +0.2
146,886 - MPMX19_05992 0.30 -0.0
146,886 - MPMX19_05992 0.30 +0.9
146,897 + MPMX19_05992 0.32 -0.3
146,897 + MPMX19_05992 0.32 +0.2
146,897 + MPMX19_05992 0.32 -1.3
146,897 + MPMX19_05992 0.32 -0.1
146,897 + MPMX19_05992 0.32 -0.0
146,897 + MPMX19_05992 0.32 -1.4
146,898 - MPMX19_05992 0.32 +1.9
146,898 - MPMX19_05992 0.32 -0.6
146,898 - MPMX19_05992 0.32 +0.3
146,898 - MPMX19_05992 0.32 -0.3
146,898 - MPMX19_05992 0.32 +0.1
146,898 - MPMX19_05992 0.32 -0.2
146,898 - MPMX19_05992 0.32 +0.1
146,898 - MPMX19_05992 0.32 -1.1
147,041 + MPMX19_05992 0.58 +0.7
147,041 + MPMX19_05992 0.58 -0.7
147,041 + MPMX19_05992 0.58 -0.9
147,041 + MPMX19_05992 0.58 -2.1
147,041 + MPMX19_05992 0.58 -0.5
147,041 + MPMX19_05992 0.58 -1.8
147,041 + MPMX19_05992 0.58 -0.9
147,041 + MPMX19_05992 0.58 +1.3
147,041 + MPMX19_05992 0.58 +0.5
147,041 + MPMX19_05992 0.58 -1.1
147,041 + MPMX19_05992 0.58 -0.1
147,041 + MPMX19_05992 0.58 -0.6
147,041 + MPMX19_05992 0.58 -0.5
147,042 - MPMX19_05992 0.58 -0.7
147,042 - MPMX19_05992 0.58 -0.6
147,042 - MPMX19_05992 0.58 +0.3
147,042 - MPMX19_05992 0.58 -0.9
147,042 - MPMX19_05992 0.58 +0.7
147,042 - MPMX19_05992 0.58 -0.7
147,042 - MPMX19_05992 0.58 -0.9
147,042 - MPMX19_05992 0.58 -1.3
147,042 - MPMX19_05992 0.58 -0.9
147,042 - MPMX19_05992 0.58 -1.4
147,042 - MPMX19_05992 0.58 -1.5
147,074 + MPMX19_05992 0.63 +0.5
147,074 + MPMX19_05992 0.63 -2.2
147,074 + MPMX19_05992 0.63 -0.4
147,075 - MPMX19_05992 0.64 -1.3
147,242 + +0.2
147,243 - -1.1
147,243 - -0.3
147,243 - -0.7
147,243 - -0.4
147,243 - -1.4
147,278 + -1.9
147,279 - +0.6
147,310 + -1.6
147,311 - +0.1
147,311 - +0.3
147,447 + MPMX19_05993 0.76 -1.3
147,485 + +0.5

Or see this region's nucleotide sequence