Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05951 and MPMX19_05952 are separated by 295 nucleotides MPMX19_05952 and MPMX19_05953 are separated by 89 nucleotides MPMX19_05953 and MPMX19_05954 are separated by 87 nucleotides
MPMX19_05951: MPMX19_05951 - Oxygen-dependent choline dehydrogenase, at 97,273 to 98,979
_05951
MPMX19_05952: MPMX19_05952 - hypothetical protein, at 99,275 to 100,270
_05952
MPMX19_05953: MPMX19_05953 - hypothetical protein, at 100,360 to 100,593
_05953
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.442 kb on - strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.529 kb on + strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.530 kb on - strand, within MPMX19_05951 at 98.567 kb on + strand, within MPMX19_05951 at 98.567 kb on + strand, within MPMX19_05951 at 98.621 kb on + strand, within MPMX19_05951 at 98.621 kb on + strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.622 kb on - strand, within MPMX19_05951 at 98.624 kb on + strand, within MPMX19_05951 at 98.624 kb on + strand, within MPMX19_05951 at 98.624 kb on + strand, within MPMX19_05951 at 98.625 kb on - strand, within MPMX19_05951 at 98.625 kb on - strand, within MPMX19_05951 at 98.625 kb on - strand, within MPMX19_05951 at 98.625 kb on - strand, within MPMX19_05951 at 98.625 kb on - strand, within MPMX19_05951 at 98.747 kb on + strand, within MPMX19_05951 at 98.747 kb on + strand, within MPMX19_05951 at 98.748 kb on - strand, within MPMX19_05951 at 98.777 kb on + strand, within MPMX19_05951 at 98.777 kb on + strand, within MPMX19_05951 at 98.778 kb on - strand, within MPMX19_05951 at 98.778 kb on - strand, within MPMX19_05951 at 98.778 kb on - strand, within MPMX19_05951 at 98.804 kb on + strand, within MPMX19_05951 at 98.804 kb on + strand, within MPMX19_05951 at 98.805 kb on - strand, within MPMX19_05951 at 98.805 kb on - strand, within MPMX19_05951 at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.002 kb on + strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.003 kb on - strand at 99.008 kb on + strand at 99.009 kb on - strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.020 kb on - strand at 99.074 kb on + strand at 99.074 kb on + strand at 99.074 kb on + strand at 99.075 kb on - strand at 99.075 kb on - strand at 99.075 kb on - strand at 99.095 kb on - strand at 99.455 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.656 kb on + strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.660 kb on + strand at 100.661 kb on - strand at 100.661 kb on - strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.737 kb on - strand at 100.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 98,442 - MPMX19_05951 0.68 +1.3 98,529 + MPMX19_05951 0.74 -0.9 98,529 + MPMX19_05951 0.74 +0.1 98,529 + MPMX19_05951 0.74 +0.1 98,529 + MPMX19_05951 0.74 -1.3 98,529 + MPMX19_05951 0.74 +0.9 98,529 + MPMX19_05951 0.74 -0.5 98,529 + MPMX19_05951 0.74 -0.8 98,529 + MPMX19_05951 0.74 -2.0 98,530 - MPMX19_05951 0.74 -2.4 98,530 - MPMX19_05951 0.74 -0.1 98,530 - MPMX19_05951 0.74 +0.5 98,530 - MPMX19_05951 0.74 -0.3 98,530 - MPMX19_05951 0.74 +1.1 98,530 - MPMX19_05951 0.74 -0.1 98,530 - MPMX19_05951 0.74 -0.1 98,567 + MPMX19_05951 0.76 +1.5 98,567 + MPMX19_05951 0.76 -1.5 98,621 + MPMX19_05951 0.79 -1.6 98,621 + MPMX19_05951 0.79 -0.5 98,622 - MPMX19_05951 0.79 +0.9 98,622 - MPMX19_05951 0.79 -0.1 98,622 - MPMX19_05951 0.79 -0.5 98,622 - MPMX19_05951 0.79 +0.6 98,622 - MPMX19_05951 0.79 -0.3 98,622 - MPMX19_05951 0.79 +0.7 98,622 - MPMX19_05951 0.79 -0.9 98,624 + MPMX19_05951 0.79 +0.1 98,624 + MPMX19_05951 0.79 -2.4 98,624 + MPMX19_05951 0.79 +0.4 98,625 - MPMX19_05951 0.79 -1.6 98,625 - MPMX19_05951 0.79 +0.9 98,625 - MPMX19_05951 0.79 +1.5 98,625 - MPMX19_05951 0.79 -0.2 98,625 - MPMX19_05951 0.79 -0.7 98,747 + MPMX19_05951 0.86 -1.0 98,747 + MPMX19_05951 0.86 +0.5 98,748 - MPMX19_05951 0.86 +0.1 98,777 + MPMX19_05951 0.88 -0.0 98,777 + MPMX19_05951 0.88 -0.6 98,778 - MPMX19_05951 0.88 +1.9 98,778 - MPMX19_05951 0.88 -1.3 98,778 - MPMX19_05951 0.88 -1.7 98,804 + MPMX19_05951 0.90 +1.3 98,804 + MPMX19_05951 0.90 +0.1 98,805 - MPMX19_05951 0.90 +0.1 98,805 - MPMX19_05951 0.90 +1.3 99,002 + -0.1 99,002 + +1.1 99,002 + -1.3 99,002 + -0.8 99,002 + -1.0 99,002 + -0.9 99,002 + +1.4 99,002 + -0.6 99,002 + -0.5 99,002 + -0.8 99,002 + -0.8 99,002 + +0.6 99,002 + -1.7 99,002 + +1.1 99,002 + -0.1 99,002 + -1.5 99,002 + +0.2 99,002 + -1.1 99,003 - -0.1 99,003 - +0.5 99,003 - -1.2 99,003 - -0.1 99,003 - -0.6 99,003 - -1.3 99,003 - +0.1 99,003 - -0.2 99,003 - -1.8 99,003 - -0.9 99,003 - -0.3 99,003 - -0.3 99,003 - +0.5 99,003 - +1.0 99,003 - -1.7 99,003 - -2.0 99,003 - -0.6 99,003 - +0.5 99,003 - -0.1 99,003 - -0.5 99,003 - -1.9 99,003 - -1.5 99,003 - -0.1 99,008 + +0.3 99,009 - -3.3 99,019 + -1.4 99,019 + -2.8 99,019 + -1.6 99,019 + -0.7 99,019 + -0.8 99,019 + -0.4 99,020 - -0.9 99,020 - -0.9 99,020 - -0.4 99,020 - +1.3 99,020 - -0.9 99,020 - -1.8 99,020 - -0.4 99,020 - -1.3 99,074 + -1.7 99,074 + +0.9 99,074 + +0.9 99,075 - +0.5 99,075 - -0.9 99,075 - -1.0 99,095 - -0.6 99,455 - MPMX19_05952 0.18 -1.8 99,514 - MPMX19_05952 0.24 +1.1 99,514 - MPMX19_05952 0.24 -0.1 99,656 + MPMX19_05952 0.38 -1.2 99,657 - MPMX19_05952 0.38 -0.1 99,657 - MPMX19_05952 0.38 -0.8 99,882 - MPMX19_05952 0.61 -0.6 99,882 - MPMX19_05952 0.61 -2.3 100,013 + MPMX19_05952 0.74 -1.6 100,013 + MPMX19_05952 0.74 -1.9 100,013 + MPMX19_05952 0.74 -0.6 100,013 + MPMX19_05952 0.74 -0.7 100,013 + MPMX19_05952 0.74 -1.4 100,013 + MPMX19_05952 0.74 -2.1 100,013 + MPMX19_05952 0.74 -1.7 100,013 + MPMX19_05952 0.74 +0.6 100,013 + MPMX19_05952 0.74 -0.3 100,013 + MPMX19_05952 0.74 +0.6 100,014 - MPMX19_05952 0.74 +0.9 100,014 - MPMX19_05952 0.74 -0.2 100,014 - MPMX19_05952 0.74 -1.6 100,014 - MPMX19_05952 0.74 -2.2 100,014 - MPMX19_05952 0.74 -1.1 100,014 - MPMX19_05952 0.74 +0.2 100,014 - MPMX19_05952 0.74 -0.3 100,097 + MPMX19_05952 0.83 +0.2 100,097 + MPMX19_05952 0.83 +0.1 100,097 + MPMX19_05952 0.83 -0.3 100,098 - MPMX19_05952 0.83 -0.8 100,098 - MPMX19_05952 0.83 -1.5 100,098 - MPMX19_05952 0.83 -2.8 100,660 + -0.8 100,661 - -0.5 100,661 - +0.3 100,709 + -1.6 100,709 + -0.5 100,709 + +0.7 100,710 - +0.5 100,710 - -0.1 100,710 - +0.1 100,710 - -1.9 100,710 - +0.1 100,710 - +1.1 100,737 - -0.1 100,835 + +0.1
Or see this region's nucleotide sequence