Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05949 and MPMX19_05950 are separated by 628 nucleotides MPMX19_05950 and MPMX19_05951 are separated by 53 nucleotides
MPMX19_05949: MPMX19_05949 - Isoquinoline 1-oxidoreductase subunit beta, at 93,751 to 96,006
_05949
MPMX19_05950: MPMX19_05950 - G/U mismatch-specific DNA glycosylase, at 96,635 to 97,219
_05950
MPMX19_05951: MPMX19_05951 - Oxygen-dependent choline dehydrogenase, at 97,273 to 98,979
_05951
Position (kb) 96
97
98 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.005 kb on - strand at 96.005 kb on - strand at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.996 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.178 kb on + strand at 97.179 kb on - strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.982 kb on + strand, within MPMX19_05951 at 97.982 kb on + strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 98.117 kb on + strand, within MPMX19_05951 at 98.117 kb on + strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.190 kb on - strand, within MPMX19_05951
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 95,818 + +0.3 95,818 + -0.6 95,818 + -0.7 95,818 + -0.2 95,818 + -0.1 95,818 + -0.8 95,818 + -0.6 95,818 + +0.5 95,818 + -1.9 95,818 + -0.6 95,818 + -1.3 95,818 + -1.7 95,818 + -1.6 95,818 + +0.3 95,818 + +0.3 95,818 + -1.1 95,818 + -1.5 95,818 + -0.6 95,818 + -1.0 95,819 - -0.5 95,819 - -0.5 95,819 - +0.3 95,819 - -0.5 95,819 - -1.8 95,819 - +0.9 95,819 - -1.3 95,819 - -1.6 95,819 - -0.5 95,819 - -0.2 95,819 - -0.1 95,819 - -1.0 95,819 - +0.0 95,819 - -0.9 95,819 - -0.1 95,819 - +0.4 95,819 - -0.7 95,819 - -0.5 95,819 - +1.0 95,819 - +2.1 95,819 - +0.8 95,819 - +1.0 95,819 - -0.6 96,004 + +0.1 96,004 + -0.3 96,004 + -0.5 96,004 + -0.5 96,004 + -0.5 96,004 + -1.5 96,004 + +0.0 96,005 - +0.7 96,005 - +1.1 96,813 + MPMX19_05950 0.30 -0.5 96,813 + MPMX19_05950 0.30 +0.6 96,813 + MPMX19_05950 0.30 -0.9 96,813 + MPMX19_05950 0.30 -0.5 96,814 - MPMX19_05950 0.31 -0.7 96,814 - MPMX19_05950 0.31 +1.0 96,814 - MPMX19_05950 0.31 +0.5 96,814 - MPMX19_05950 0.31 -1.7 96,814 - MPMX19_05950 0.31 -0.2 96,814 - MPMX19_05950 0.31 -0.5 96,814 - MPMX19_05950 0.31 -0.9 96,831 + MPMX19_05950 0.34 +0.4 96,831 + MPMX19_05950 0.34 -0.7 96,831 + MPMX19_05950 0.34 -0.4 96,831 + MPMX19_05950 0.34 -0.7 96,832 - MPMX19_05950 0.34 -1.5 96,832 - MPMX19_05950 0.34 -1.3 96,832 - MPMX19_05950 0.34 -1.5 96,832 - MPMX19_05950 0.34 -0.1 96,832 - MPMX19_05950 0.34 -0.3 96,832 - MPMX19_05950 0.34 -1.4 96,832 - MPMX19_05950 0.34 -0.2 96,832 - MPMX19_05950 0.34 +0.6 96,996 + MPMX19_05950 0.62 -1.4 97,059 + MPMX19_05950 0.72 -0.1 97,059 + MPMX19_05950 0.72 +0.1 97,059 + MPMX19_05950 0.72 -0.9 97,059 + MPMX19_05950 0.72 +0.7 97,059 + MPMX19_05950 0.72 +0.3 97,059 + MPMX19_05950 0.72 +0.6 97,059 + MPMX19_05950 0.72 +0.2 97,059 + MPMX19_05950 0.72 -2.1 97,060 - MPMX19_05950 0.73 -1.6 97,060 - MPMX19_05950 0.73 -1.6 97,060 - MPMX19_05950 0.73 -0.6 97,060 - MPMX19_05950 0.73 +2.2 97,060 - MPMX19_05950 0.73 +1.2 97,060 - MPMX19_05950 0.73 -0.5 97,178 + -0.3 97,179 - +1.1 97,252 + -0.9 97,252 + -0.8 97,252 + -0.5 97,252 + +0.1 97,252 + +0.4 97,252 + -1.3 97,252 + -1.1 97,252 + -0.3 97,252 + +0.9 97,252 + +1.1 97,252 + -0.9 97,252 + +0.3 97,253 - +0.3 97,253 - -1.4 97,253 - -0.1 97,253 - -0.5 97,253 - -0.3 97,253 - -0.4 97,253 - -0.9 97,253 - -0.7 97,253 - +0.6 97,253 - -1.3 97,253 - +0.1 97,254 + +2.9 97,254 + -0.9 97,254 + +0.5 97,254 + -1.8 97,254 + -1.2 97,254 + +0.4 97,254 + -0.0 97,254 + -1.0 97,254 + -0.4 97,254 + -0.1 97,254 + -0.5 97,254 + -1.7 97,254 + -0.2 97,254 + +0.9 97,254 + +0.4 97,254 + -0.3 97,254 + -1.9 97,254 + +1.1 97,254 + +0.1 97,254 + +0.5 97,254 + -1.8 97,254 + -1.5 97,254 + -1.1 97,254 + +0.5 97,254 + +0.5 97,254 + -1.7 97,254 + +1.0 97,254 + -0.5 97,254 + -1.9 97,255 - -0.6 97,255 - +1.2 97,255 - +0.2 97,255 - -0.6 97,255 - -0.6 97,255 - -1.5 97,255 - -0.9 97,255 - +0.7 97,255 - -1.1 97,255 - +0.6 97,255 - -0.3 97,255 - +0.6 97,255 - +1.9 97,255 - -2.3 97,255 - -0.0 97,255 - -1.2 97,255 - -1.1 97,255 - -0.4 97,255 - -0.3 97,255 - -2.3 97,427 + -0.5 97,427 + -0.3 97,427 + -2.7 97,427 + +0.5 97,427 + +1.5 97,428 - +0.1 97,428 - -0.9 97,428 - +0.5 97,428 - -1.4 97,428 - -1.5 97,428 - +0.1 97,428 - -0.5 97,428 - -1.1 97,428 - -0.9 97,428 - +0.7 97,509 + MPMX19_05951 0.14 +0.3 97,509 + MPMX19_05951 0.14 -1.6 97,509 + MPMX19_05951 0.14 -1.2 97,509 + MPMX19_05951 0.14 -2.5 97,509 + MPMX19_05951 0.14 -0.5 97,510 - MPMX19_05951 0.14 +0.3 97,510 - MPMX19_05951 0.14 +0.1 97,510 - MPMX19_05951 0.14 +0.6 97,510 - MPMX19_05951 0.14 -1.1 97,510 - MPMX19_05951 0.14 -0.3 97,510 - MPMX19_05951 0.14 +0.5 97,510 - MPMX19_05951 0.14 -0.9 97,510 - MPMX19_05951 0.14 +1.3 97,552 + MPMX19_05951 0.16 -0.8 97,552 + MPMX19_05951 0.16 +0.4 97,552 + MPMX19_05951 0.16 +0.6 97,552 + MPMX19_05951 0.16 -0.5 97,552 + MPMX19_05951 0.16 -0.5 97,553 - MPMX19_05951 0.16 -0.3 97,553 - MPMX19_05951 0.16 +0.9 97,553 - MPMX19_05951 0.16 -0.1 97,553 - MPMX19_05951 0.16 -0.9 97,553 - MPMX19_05951 0.16 -1.7 97,982 + MPMX19_05951 0.42 -0.7 97,982 + MPMX19_05951 0.42 -0.6 97,983 - MPMX19_05951 0.42 +0.5 97,983 - MPMX19_05951 0.42 +0.0 97,983 - MPMX19_05951 0.42 +0.3 97,983 - MPMX19_05951 0.42 -0.7 97,983 - MPMX19_05951 0.42 -1.1 97,997 + MPMX19_05951 0.42 -0.5 97,997 + MPMX19_05951 0.42 -0.9 97,997 + MPMX19_05951 0.42 -1.1 97,997 + MPMX19_05951 0.42 -0.7 97,997 + MPMX19_05951 0.42 +1.0 97,997 + MPMX19_05951 0.42 +0.9 97,997 + MPMX19_05951 0.42 +0.5 97,997 + MPMX19_05951 0.42 -0.8 97,997 + MPMX19_05951 0.42 -0.5 97,997 + MPMX19_05951 0.42 +0.4 97,997 + MPMX19_05951 0.42 -0.4 97,997 + MPMX19_05951 0.42 -0.5 97,998 - MPMX19_05951 0.42 -0.9 97,998 - MPMX19_05951 0.42 -2.3 97,998 - MPMX19_05951 0.42 +0.3 97,998 - MPMX19_05951 0.42 +0.3 97,998 - MPMX19_05951 0.42 -0.7 97,998 - MPMX19_05951 0.42 -0.0 97,998 - MPMX19_05951 0.42 +1.6 97,998 - MPMX19_05951 0.42 -2.4 97,998 - MPMX19_05951 0.42 -0.4 97,998 - MPMX19_05951 0.42 +2.9 97,998 - MPMX19_05951 0.42 +0.0 97,998 - MPMX19_05951 0.42 -0.6 97,998 - MPMX19_05951 0.42 -0.4 97,998 - MPMX19_05951 0.42 -0.6 97,998 - MPMX19_05951 0.42 -0.2 97,998 - MPMX19_05951 0.42 -1.3 97,998 - MPMX19_05951 0.42 -0.0 97,998 - MPMX19_05951 0.42 -0.7 98,117 + MPMX19_05951 0.49 -0.2 98,117 + MPMX19_05951 0.49 +1.6 98,118 - MPMX19_05951 0.50 +0.7 98,118 - MPMX19_05951 0.50 -1.7 98,118 - MPMX19_05951 0.50 +0.1 98,118 - MPMX19_05951 0.50 -1.3 98,118 - MPMX19_05951 0.50 -0.3 98,118 - MPMX19_05951 0.50 -1.2 98,118 - MPMX19_05951 0.50 -1.6 98,189 + MPMX19_05951 0.54 -0.6 98,189 + MPMX19_05951 0.54 +2.9 98,189 + MPMX19_05951 0.54 +1.1 98,190 - MPMX19_05951 0.54 +0.6
Or see this region's nucleotide sequence