Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05921

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05920 and MPMX19_05921 are separated by 45 nucleotidesMPMX19_05921 and MPMX19_05922 are separated by 28 nucleotidesMPMX19_05922 and MPMX19_05923 are separated by 101 nucleotides MPMX19_05920: MPMX19_05920 - Flagellar motor switch protein FliG, at 54,474 to 55,502 _05920 MPMX19_05921: MPMX19_05921 - hypothetical protein, at 55,548 to 56,270 _05921 MPMX19_05922: MPMX19_05922 - putative oxidoreductase/MSMEI_2347, at 56,299 to 57,135 _05922 MPMX19_05923: MPMX19_05923 - Vitamin B12 import ATP-binding protein BtuD, at 57,237 to 58,901 _05923 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.720 kb on + strand, within MPMX19_05920at 54.720 kb on + strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.873 kb on + strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.497 kb on + strandat 55.497 kb on + strandat 55.497 kb on + strandat 55.498 kb on - strandat 55.498 kb on - strandat 55.498 kb on - strandat 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.612 kb on + strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 57.238 kb on + strandat 57.238 kb on + strandat 57.238 kb on + strandat 57.238 kb on + strandat 57.239 kb on - strandat 57.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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54,720 + MPMX19_05920 0.24 -0.6
54,720 + MPMX19_05920 0.24 -0.1
54,721 - MPMX19_05920 0.24 -0.3
54,721 - MPMX19_05920 0.24 -1.1
54,721 - MPMX19_05920 0.24 -0.5
54,721 - MPMX19_05920 0.24 -0.5
54,858 + MPMX19_05920 0.37 -0.9
54,858 + MPMX19_05920 0.37 -0.7
54,858 + MPMX19_05920 0.37 +0.0
54,859 - MPMX19_05920 0.37 -0.5
54,859 - MPMX19_05920 0.37 -0.4
54,859 - MPMX19_05920 0.37 +0.2
54,859 - MPMX19_05920 0.37 +0.5
54,859 - MPMX19_05920 0.37 +0.3
54,859 - MPMX19_05920 0.37 -1.3
54,859 - MPMX19_05920 0.37 -0.2
54,859 - MPMX19_05920 0.37 -2.1
54,859 - MPMX19_05920 0.37 +0.4
54,859 - MPMX19_05920 0.37 -1.8
54,859 - MPMX19_05920 0.37 +1.2
54,873 + MPMX19_05920 0.39 +0.7
54,874 - MPMX19_05920 0.39 -0.5
54,874 - MPMX19_05920 0.39 +1.0
55,056 + MPMX19_05920 0.57 -0.1
55,056 + MPMX19_05920 0.57 +0.1
55,057 - MPMX19_05920 0.57 -0.5
55,057 - MPMX19_05920 0.57 +0.6
55,057 - MPMX19_05920 0.57 -0.2
55,373 + MPMX19_05920 0.87 -0.1
55,373 + MPMX19_05920 0.87 +0.8
55,373 + MPMX19_05920 0.87 -1.1
55,373 + MPMX19_05920 0.87 -0.3
55,373 + MPMX19_05920 0.87 +0.1
55,374 - MPMX19_05920 0.87 +1.3
55,374 - MPMX19_05920 0.87 -0.7
55,374 - MPMX19_05920 0.87 -0.9
55,374 - MPMX19_05920 0.87 -0.7
55,497 + -0.5
55,497 + -0.8
55,497 + -2.2
55,498 - +0.0
55,498 - -1.2
55,498 - -1.3
56,162 + MPMX19_05921 0.85 -0.5
56,162 + MPMX19_05921 0.85 -0.1
56,162 + MPMX19_05921 0.85 -1.6
56,163 - MPMX19_05921 0.85 -1.1
56,163 - MPMX19_05921 0.85 -0.4
56,564 + MPMX19_05922 0.32 +0.5
56,564 + MPMX19_05922 0.32 +0.5
56,564 + MPMX19_05922 0.32 -1.5
56,564 + MPMX19_05922 0.32 -1.2
56,564 + MPMX19_05922 0.32 +0.9
56,564 + MPMX19_05922 0.32 -0.0
56,564 + MPMX19_05922 0.32 +2.7
56,565 - MPMX19_05922 0.32 +0.2
56,565 - MPMX19_05922 0.32 -0.5
56,565 - MPMX19_05922 0.32 -0.5
56,565 - MPMX19_05922 0.32 +0.5
56,565 - MPMX19_05922 0.32 -1.3
56,565 - MPMX19_05922 0.32 -0.9
56,612 + MPMX19_05922 0.37 -0.3
56,613 - MPMX19_05922 0.38 -0.2
56,613 - MPMX19_05922 0.38 +1.4
56,613 - MPMX19_05922 0.38 -1.3
56,639 + MPMX19_05922 0.41 -0.3
56,639 + MPMX19_05922 0.41 -0.1
56,639 + MPMX19_05922 0.41 +0.5
56,639 + MPMX19_05922 0.41 +0.9
56,639 + MPMX19_05922 0.41 +0.3
56,639 + MPMX19_05922 0.41 -0.0
56,639 + MPMX19_05922 0.41 -0.2
56,639 + MPMX19_05922 0.41 +0.1
56,639 + MPMX19_05922 0.41 -0.2
56,639 + MPMX19_05922 0.41 -0.9
56,639 + MPMX19_05922 0.41 -1.3
56,639 + MPMX19_05922 0.41 +0.2
56,640 - MPMX19_05922 0.41 -0.5
56,640 - MPMX19_05922 0.41 -1.2
56,640 - MPMX19_05922 0.41 -0.5
56,640 - MPMX19_05922 0.41 -0.1
56,640 - MPMX19_05922 0.41 +0.1
56,640 - MPMX19_05922 0.41 -0.7
56,640 - MPMX19_05922 0.41 -0.7
56,640 - MPMX19_05922 0.41 -2.0
56,640 - MPMX19_05922 0.41 +0.1
56,640 - MPMX19_05922 0.41 -1.2
56,640 - MPMX19_05922 0.41 +0.5
56,640 - MPMX19_05922 0.41 +1.5
56,640 - MPMX19_05922 0.41 +0.5
56,640 - MPMX19_05922 0.41 -0.0
56,640 - MPMX19_05922 0.41 +0.3
56,813 + MPMX19_05922 0.61 +0.5
56,813 + MPMX19_05922 0.61 +0.1
56,813 + MPMX19_05922 0.61 -0.5
56,813 + MPMX19_05922 0.61 +0.1
56,813 + MPMX19_05922 0.61 +0.7
56,813 + MPMX19_05922 0.61 -0.1
56,813 + MPMX19_05922 0.61 -0.7
56,813 + MPMX19_05922 0.61 +0.3
56,813 + MPMX19_05922 0.61 +0.7
56,813 + MPMX19_05922 0.61 +0.6
56,813 + MPMX19_05922 0.61 +0.1
56,814 - MPMX19_05922 0.62 -1.3
56,814 - MPMX19_05922 0.62 +0.1
56,814 - MPMX19_05922 0.62 +0.9
56,814 - MPMX19_05922 0.62 +0.6
56,814 - MPMX19_05922 0.62 +0.7
56,814 - MPMX19_05922 0.62 -0.8
56,814 - MPMX19_05922 0.62 -0.6
56,814 - MPMX19_05922 0.62 +0.1
56,814 - MPMX19_05922 0.62 +0.7
56,814 - MPMX19_05922 0.62 -0.5
56,814 - MPMX19_05922 0.62 +0.1
56,814 - MPMX19_05922 0.62 -0.8
56,978 + MPMX19_05922 0.81 -0.1
56,978 + MPMX19_05922 0.81 -0.7
56,978 + MPMX19_05922 0.81 -0.8
56,978 + MPMX19_05922 0.81 -0.2
56,978 + MPMX19_05922 0.81 -1.1
56,978 + MPMX19_05922 0.81 -0.7
56,978 + MPMX19_05922 0.81 -1.0
56,978 + MPMX19_05922 0.81 -1.6
56,978 + MPMX19_05922 0.81 -1.3
56,978 + MPMX19_05922 0.81 -0.8
56,978 + MPMX19_05922 0.81 +1.4
56,978 + MPMX19_05922 0.81 -1.5
56,978 + MPMX19_05922 0.81 +0.5
56,978 + MPMX19_05922 0.81 -1.9
56,978 + MPMX19_05922 0.81 -0.4
56,978 + MPMX19_05922 0.81 -1.1
56,978 + MPMX19_05922 0.81 -1.3
56,979 - MPMX19_05922 0.81 -1.0
56,979 - MPMX19_05922 0.81 +0.6
56,979 - MPMX19_05922 0.81 -0.5
56,979 - MPMX19_05922 0.81 -0.3
56,979 - MPMX19_05922 0.81 +2.5
56,979 - MPMX19_05922 0.81 +1.6
56,979 - MPMX19_05922 0.81 +0.8
56,979 - MPMX19_05922 0.81 +1.6
56,979 - MPMX19_05922 0.81 -1.6
56,979 - MPMX19_05922 0.81 +0.3
56,979 - MPMX19_05922 0.81 +0.5
56,979 - MPMX19_05922 0.81 +0.7
56,979 - MPMX19_05922 0.81 -0.6
56,979 - MPMX19_05922 0.81 +0.3
56,979 - MPMX19_05922 0.81 -0.5
56,979 - MPMX19_05922 0.81 -0.1
56,979 - MPMX19_05922 0.81 -2.1
56,979 - MPMX19_05922 0.81 +0.1
56,979 - MPMX19_05922 0.81 +0.7
56,979 - MPMX19_05922 0.81 -1.1
56,979 - MPMX19_05922 0.81 +1.3
56,979 - MPMX19_05922 0.81 -1.1
56,979 - MPMX19_05922 0.81 -1.0
56,979 - MPMX19_05922 0.81 -0.5
56,979 - MPMX19_05922 0.81 +1.7
57,238 + -1.5
57,238 + -0.8
57,238 + -1.3
57,238 + -1.1
57,239 - -0.3
57,239 - +1.7

Or see this region's nucleotide sequence