Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05915

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05913 and MPMX19_05914 are separated by 19 nucleotidesMPMX19_05914 and MPMX19_05915 are separated by 188 nucleotidesMPMX19_05915 and MPMX19_05916 overlap by 1 nucleotidesMPMX19_05916 and MPMX19_05917 are separated by 13 nucleotides MPMX19_05913: MPMX19_05913 - hypothetical protein, at 48,493 to 49,665 _05913 MPMX19_05914: MPMX19_05914 - hypothetical protein, at 49,685 to 50,233 _05914 MPMX19_05915: MPMX19_05915 - Flagellar M-ring protein, at 50,422 to 52,140 _05915 MPMX19_05916: MPMX19_05916 - hypothetical protein, at 52,140 to 52,826 _05916 MPMX19_05917: MPMX19_05917 - hypothetical protein, at 52,840 to 53,178 _05917 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1at 49.686 kb on + strandat 49.686 kb on + strandat 49.686 kb on + strandat 49.686 kb on + strandat 49.687 kb on - strandat 49.687 kb on - strandat 49.687 kb on - strandat 49.687 kb on - strandat 50.227 kb on + strandat 50.227 kb on + strandat 50.227 kb on + strandat 50.228 kb on - strandat 50.336 kb on + strandat 50.336 kb on + strandat 50.380 kb on + strandat 50.380 kb on + strandat 50.381 kb on - strandat 50.557 kb on + strandat 50.557 kb on + strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strandat 51.424 kb on + strand, within MPMX19_05915at 51.424 kb on + strand, within MPMX19_05915at 51.424 kb on + strand, within MPMX19_05915at 51.425 kb on - strand, within MPMX19_05915at 51.425 kb on - strand, within MPMX19_05915at 51.425 kb on - strand, within MPMX19_05915at 51.542 kb on - strand, within MPMX19_05915at 52.105 kb on - strandat 52.105 kb on - strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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49,686 + -0.6
49,686 + -2.1
49,686 + -1.1
49,686 + +0.7
49,687 - -0.1
49,687 - -1.7
49,687 - -0.2
49,687 - +0.5
50,227 + -0.1
50,227 + -0.8
50,227 + +0.7
50,228 - -0.8
50,336 + -1.1
50,336 + +0.6
50,380 + -0.8
50,380 + -0.1
50,381 - -0.0
50,557 + -0.1
50,557 + +0.7
50,558 - -1.8
50,558 - +0.2
50,558 - +0.5
50,558 - -0.6
50,558 - -0.2
51,424 + MPMX19_05915 0.58 -0.1
51,424 + MPMX19_05915 0.58 -1.3
51,424 + MPMX19_05915 0.58 -1.7
51,425 - MPMX19_05915 0.58 +0.9
51,425 - MPMX19_05915 0.58 -1.7
51,425 - MPMX19_05915 0.58 +0.5
51,542 - MPMX19_05915 0.65 -1.1
52,105 - +1.1
52,105 - +0.2
52,123 + +0.1
52,123 + +0.3
52,123 + +0.9
52,123 + +0.2
52,124 - -1.1
52,124 - -1.5
52,124 - -1.1
52,124 - -0.7
52,124 - +0.5
52,124 - -0.6
52,124 - -0.3
52,921 + MPMX19_05917 0.24 -0.3
52,921 + MPMX19_05917 0.24 -1.7
52,921 + MPMX19_05917 0.24 +0.4
52,921 + MPMX19_05917 0.24 +0.7
52,921 + MPMX19_05917 0.24 -1.1
52,921 + MPMX19_05917 0.24 +0.2
52,921 + MPMX19_05917 0.24 +0.3
52,921 + MPMX19_05917 0.24 +0.9
52,921 + MPMX19_05917 0.24 -1.3
52,921 + MPMX19_05917 0.24 +0.7
52,921 + MPMX19_05917 0.24 +1.1
52,921 + MPMX19_05917 0.24 -0.3
52,921 + MPMX19_05917 0.24 -0.0
52,921 + MPMX19_05917 0.24 -0.4
52,921 + MPMX19_05917 0.24 +0.5
52,921 + MPMX19_05917 0.24 -0.4
52,922 - MPMX19_05917 0.24 -1.7
52,922 - MPMX19_05917 0.24 -0.5
52,922 - MPMX19_05917 0.24 +0.5
52,922 - MPMX19_05917 0.24 +0.4
52,922 - MPMX19_05917 0.24 -1.9
52,922 - MPMX19_05917 0.24 +1.2
52,922 - MPMX19_05917 0.24 -0.1
52,922 - MPMX19_05917 0.24 -0.9
52,922 - MPMX19_05917 0.24 -2.6
52,922 - MPMX19_05917 0.24 -1.8
52,945 + MPMX19_05917 0.31 -0.8
52,945 + MPMX19_05917 0.31 -0.5
52,945 + MPMX19_05917 0.31 -0.7
52,945 + MPMX19_05917 0.31 -0.6
52,945 + MPMX19_05917 0.31 +0.2
52,945 + MPMX19_05917 0.31 +0.4
52,945 + MPMX19_05917 0.31 -0.0
52,945 + MPMX19_05917 0.31 +0.3
52,945 + MPMX19_05917 0.31 +0.7
52,945 + MPMX19_05917 0.31 +1.1
52,945 + MPMX19_05917 0.31 +0.2
52,945 + MPMX19_05917 0.31 -0.1
52,945 + MPMX19_05917 0.31 -2.8
52,945 + MPMX19_05917 0.31 -1.9
52,945 + MPMX19_05917 0.31 -3.0
52,945 + MPMX19_05917 0.31 +0.3
52,945 + MPMX19_05917 0.31 -0.5
52,946 - MPMX19_05917 0.31 -0.7
52,946 - MPMX19_05917 0.31 +0.2
52,946 - MPMX19_05917 0.31 -1.1
52,946 - MPMX19_05917 0.31 +0.5
52,946 - MPMX19_05917 0.31 -0.1
52,946 - MPMX19_05917 0.31 -0.0
52,946 - MPMX19_05917 0.31 -1.6
52,946 - MPMX19_05917 0.31 -0.3
52,946 - MPMX19_05917 0.31 +0.2
52,946 - MPMX19_05917 0.31 -0.2
52,946 - MPMX19_05917 0.31 +0.5
52,946 - MPMX19_05917 0.31 -0.7
52,946 - MPMX19_05917 0.31 -0.5
52,946 - MPMX19_05917 0.31 -0.7
52,946 - MPMX19_05917 0.31 -1.8
52,946 - MPMX19_05917 0.31 -0.1

Or see this region's nucleotide sequence