Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05914

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05913 and MPMX19_05914 are separated by 19 nucleotidesMPMX19_05914 and MPMX19_05915 are separated by 188 nucleotides MPMX19_05913: MPMX19_05913 - hypothetical protein, at 48,493 to 49,665 _05913 MPMX19_05914: MPMX19_05914 - hypothetical protein, at 49,685 to 50,233 _05914 MPMX19_05915: MPMX19_05915 - Flagellar M-ring protein, at 50,422 to 52,140 _05915 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.842 kb on + strand, within MPMX19_05913at 48.842 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.064 kb on + strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.065 kb on - strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.130 kb on + strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.131 kb on - strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.235 kb on + strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.236 kb on - strand, within MPMX19_05913at 49.344 kb on + strand, within MPMX19_05913at 49.344 kb on + strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.345 kb on - strand, within MPMX19_05913at 49.686 kb on + strandat 49.686 kb on + strandat 49.686 kb on + strandat 49.686 kb on + strandat 49.687 kb on - strandat 49.687 kb on - strandat 49.687 kb on - strandat 49.687 kb on - strandat 50.227 kb on + strandat 50.227 kb on + strandat 50.227 kb on + strandat 50.228 kb on - strandat 50.336 kb on + strandat 50.336 kb on + strandat 50.380 kb on + strandat 50.380 kb on + strandat 50.381 kb on - strandat 50.557 kb on + strandat 50.557 kb on + strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strandat 50.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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48,842 + MPMX19_05913 0.30 +0.6
48,842 + MPMX19_05913 0.30 +0.2
49,064 + MPMX19_05913 0.49 -1.3
49,064 + MPMX19_05913 0.49 -1.2
49,064 + MPMX19_05913 0.49 -0.3
49,064 + MPMX19_05913 0.49 -0.1
49,064 + MPMX19_05913 0.49 -0.6
49,064 + MPMX19_05913 0.49 -0.4
49,064 + MPMX19_05913 0.49 -1.2
49,064 + MPMX19_05913 0.49 -1.9
49,064 + MPMX19_05913 0.49 +0.2
49,065 - MPMX19_05913 0.49 +0.9
49,065 - MPMX19_05913 0.49 -0.1
49,065 - MPMX19_05913 0.49 -0.6
49,065 - MPMX19_05913 0.49 -0.3
49,065 - MPMX19_05913 0.49 -1.1
49,065 - MPMX19_05913 0.49 -0.3
49,065 - MPMX19_05913 0.49 -0.9
49,130 + MPMX19_05913 0.54 +0.6
49,130 + MPMX19_05913 0.54 -1.3
49,130 + MPMX19_05913 0.54 +0.4
49,130 + MPMX19_05913 0.54 -0.1
49,130 + MPMX19_05913 0.54 +0.8
49,130 + MPMX19_05913 0.54 -0.9
49,131 - MPMX19_05913 0.54 +0.1
49,131 - MPMX19_05913 0.54 -0.3
49,131 - MPMX19_05913 0.54 +0.9
49,131 - MPMX19_05913 0.54 -0.3
49,131 - MPMX19_05913 0.54 +0.3
49,235 + MPMX19_05913 0.63 -0.9
49,235 + MPMX19_05913 0.63 -0.7
49,235 + MPMX19_05913 0.63 -0.2
49,235 + MPMX19_05913 0.63 +0.2
49,235 + MPMX19_05913 0.63 -0.0
49,236 - MPMX19_05913 0.63 +0.3
49,236 - MPMX19_05913 0.63 -0.0
49,236 - MPMX19_05913 0.63 -1.3
49,344 + MPMX19_05913 0.73 -2.1
49,344 + MPMX19_05913 0.73 +0.3
49,345 - MPMX19_05913 0.73 +0.9
49,345 - MPMX19_05913 0.73 -1.5
49,345 - MPMX19_05913 0.73 -2.0
49,345 - MPMX19_05913 0.73 +0.5
49,345 - MPMX19_05913 0.73 -0.1
49,345 - MPMX19_05913 0.73 +0.3
49,345 - MPMX19_05913 0.73 -0.6
49,345 - MPMX19_05913 0.73 -0.7
49,686 + -0.6
49,686 + -2.1
49,686 + -1.1
49,686 + +0.7
49,687 - -0.1
49,687 - -1.7
49,687 - -0.2
49,687 - +0.5
50,227 + -0.1
50,227 + -0.8
50,227 + +0.7
50,228 - -0.8
50,336 + -1.1
50,336 + +0.6
50,380 + -0.8
50,380 + -0.1
50,381 - -0.0
50,557 + -0.1
50,557 + +0.7
50,558 - -1.8
50,558 - +0.2
50,558 - +0.5
50,558 - -0.6
50,558 - -0.2

Or see this region's nucleotide sequence