Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05877

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05875 and MPMX19_05876 are separated by 12 nucleotidesMPMX19_05876 and MPMX19_05877 are separated by 31 nucleotidesMPMX19_05877 and MPMX19_05878 are separated by 37 nucleotidesMPMX19_05878 and MPMX19_05879 are separated by 50 nucleotides MPMX19_05875: MPMX19_05875 - Catabolite control protein A, at 5,115 to 6,215 _05875 MPMX19_05876: MPMX19_05876 - 2-ketogluconate reductase, at 6,228 to 7,166 _05876 MPMX19_05877: MPMX19_05877 - Glutamine transport ATP-binding protein GlnQ, at 7,198 to 7,986 _05877 MPMX19_05878: MPMX19_05878 - L-cystine-binding protein FliY, at 8,024 to 8,833 _05878 MPMX19_05879: MPMX19_05879 - L-cystine transport system permease protein YecS, at 8,884 to 9,537 _05879 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6.198 kb on - strandat 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.622 kb on + strand, within MPMX19_05876at 6.623 kb on - strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.656 kb on - strand, within MPMX19_05876at 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.529 kb on + strand, within MPMX19_05877at 7.529 kb on + strand, within MPMX19_05877at 7.530 kb on - strand, within MPMX19_05877at 7.530 kb on - strand, within MPMX19_05877at 7.568 kb on + strand, within MPMX19_05877at 7.568 kb on + strand, within MPMX19_05877at 7.569 kb on - strand, within MPMX19_05877at 7.569 kb on - strand, within MPMX19_05877at 7.569 kb on - strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.788 kb on + strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.789 kb on - strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.895 kb on + strand, within MPMX19_05877at 7.896 kb on - strand, within MPMX19_05877at 7.896 kb on - strand, within MPMX19_05877at 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.025 kb on + strandat 8.026 kb on - strandat 8.026 kb on - strandat 8.026 kb on - strandat 8.208 kb on + strand, within MPMX19_05878at 8.208 kb on + strand, within MPMX19_05878at 8.208 kb on + strand, within MPMX19_05878at 8.208 kb on + strand, within MPMX19_05878at 8.208 kb on + strand, within MPMX19_05878at 8.209 kb on - strand, within MPMX19_05878at 8.209 kb on - strand, within MPMX19_05878at 8.209 kb on - strand, within MPMX19_05878at 8.209 kb on - strand, within MPMX19_05878at 8.472 kb on + strand, within MPMX19_05878at 8.472 kb on + strand, within MPMX19_05878at 8.472 kb on + strand, within MPMX19_05878at 8.473 kb on - strand, within MPMX19_05878at 8.473 kb on - strand, within MPMX19_05878at 8.473 kb on - strand, within MPMX19_05878at 8.473 kb on - strand, within MPMX19_05878at 8.473 kb on - strand, within MPMX19_05878at 8.560 kb on - strand, within MPMX19_05878at 8.560 kb on - strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.646 kb on + strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.647 kb on - strand, within MPMX19_05878at 8.870 kb on + strandat 8.870 kb on + strandat 8.871 kb on - strandat 8.871 kb on - strandat 8.885 kb on + strandat 8.885 kb on + strandat 8.886 kb on - strandat 8.957 kb on + strand, within MPMX19_05879at 8.957 kb on + strand, within MPMX19_05879at 8.957 kb on + strand, within MPMX19_05879at 8.957 kb on + strand, within MPMX19_05879at 8.957 kb on + strand, within MPMX19_05879at 8.957 kb on + strand, within MPMX19_05879at 8.958 kb on - strand, within MPMX19_05879at 8.958 kb on - strand, within MPMX19_05879

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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6,198 - +0.3
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 -0.0
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 -1.1
6,364 + MPMX19_05876 0.14 -0.9
6,364 + MPMX19_05876 0.14 -0.9
6,364 + MPMX19_05876 0.14 -1.3
6,364 + MPMX19_05876 0.14 +0.7
6,365 - MPMX19_05876 0.15 -1.0
6,365 - MPMX19_05876 0.15 +0.1
6,365 - MPMX19_05876 0.15 +0.6
6,365 - MPMX19_05876 0.15 -0.4
6,365 - MPMX19_05876 0.15 +0.7
6,365 - MPMX19_05876 0.15 +0.6
6,365 - MPMX19_05876 0.15 -1.7
6,365 - MPMX19_05876 0.15 +1.5
6,365 - MPMX19_05876 0.15 +0.7
6,622 + MPMX19_05876 0.42 -0.8
6,623 - MPMX19_05876 0.42 -1.1
6,655 + MPMX19_05876 0.45 -0.9
6,655 + MPMX19_05876 0.45 +0.2
6,655 + MPMX19_05876 0.45 -0.8
6,655 + MPMX19_05876 0.45 +1.0
6,656 - MPMX19_05876 0.46 -0.9
7,099 + +0.4
7,099 + -0.0
7,099 + -1.4
7,099 + +0.5
7,099 + -1.5
7,099 + -0.3
7,099 + +0.1
7,099 + -0.5
7,099 + -0.7
7,099 + -2.2
7,099 + +0.3
7,099 + -1.3
7,099 + +0.9
7,099 + +0.5
7,100 - -1.7
7,100 - +1.9
7,100 - +0.7
7,100 - +0.1
7,100 - -0.5
7,100 - +0.2
7,100 - -0.9
7,100 - -1.0
7,166 + -0.9
7,166 + +0.5
7,166 + -1.3
7,166 + +0.1
7,166 + -0.1
7,166 + -0.3
7,167 - +0.6
7,167 - -0.1
7,167 - -0.3
7,167 - -0.7
7,167 - +2.9
7,167 - -0.1
7,167 - -2.7
7,167 - -0.0
7,167 - +0.2
7,167 - -0.3
7,167 - -0.5
7,167 - -1.7
7,529 + MPMX19_05877 0.42 +0.3
7,529 + MPMX19_05877 0.42 -0.1
7,530 - MPMX19_05877 0.42 -0.3
7,530 - MPMX19_05877 0.42 +0.6
7,568 + MPMX19_05877 0.47 -0.6
7,568 + MPMX19_05877 0.47 -1.7
7,569 - MPMX19_05877 0.47 +0.7
7,569 - MPMX19_05877 0.47 -0.5
7,569 - MPMX19_05877 0.47 +0.5
7,788 + MPMX19_05877 0.75 -0.6
7,788 + MPMX19_05877 0.75 -0.8
7,788 + MPMX19_05877 0.75 -1.8
7,788 + MPMX19_05877 0.75 -1.5
7,788 + MPMX19_05877 0.75 +0.0
7,788 + MPMX19_05877 0.75 +0.4
7,788 + MPMX19_05877 0.75 -0.8
7,788 + MPMX19_05877 0.75 -0.3
7,788 + MPMX19_05877 0.75 +0.3
7,788 + MPMX19_05877 0.75 -0.7
7,788 + MPMX19_05877 0.75 -0.5
7,789 - MPMX19_05877 0.75 -1.9
7,789 - MPMX19_05877 0.75 -0.4
7,789 - MPMX19_05877 0.75 -0.7
7,789 - MPMX19_05877 0.75 -0.3
7,789 - MPMX19_05877 0.75 -1.6
7,789 - MPMX19_05877 0.75 -0.1
7,789 - MPMX19_05877 0.75 +0.3
7,789 - MPMX19_05877 0.75 -0.1
7,789 - MPMX19_05877 0.75 +0.1
7,789 - MPMX19_05877 0.75 -1.8
7,895 + MPMX19_05877 0.88 -0.5
7,895 + MPMX19_05877 0.88 -0.1
7,895 + MPMX19_05877 0.88 -2.5
7,895 + MPMX19_05877 0.88 +0.1
7,895 + MPMX19_05877 0.88 -0.7
7,895 + MPMX19_05877 0.88 -0.9
7,895 + MPMX19_05877 0.88 -0.1
7,896 - MPMX19_05877 0.88 +0.5
7,896 - MPMX19_05877 0.88 +1.4
8,025 + +1.6
8,025 + -0.1
8,025 + -0.7
8,025 + -2.6
8,025 + -0.9
8,025 + +0.4
8,025 + -0.8
8,025 + -0.5
8,025 + -2.2
8,026 - -0.3
8,026 - -1.3
8,026 - +0.3
8,208 + MPMX19_05878 0.23 +0.5
8,208 + MPMX19_05878 0.23 +0.6
8,208 + MPMX19_05878 0.23 -0.7
8,208 + MPMX19_05878 0.23 +0.8
8,208 + MPMX19_05878 0.23 -1.2
8,209 - MPMX19_05878 0.23 +0.3
8,209 - MPMX19_05878 0.23 +0.5
8,209 - MPMX19_05878 0.23 -1.3
8,209 - MPMX19_05878 0.23 +0.3
8,472 + MPMX19_05878 0.55 -1.1
8,472 + MPMX19_05878 0.55 -1.3
8,472 + MPMX19_05878 0.55 -0.2
8,473 - MPMX19_05878 0.55 +1.0
8,473 - MPMX19_05878 0.55 -0.1
8,473 - MPMX19_05878 0.55 +0.9
8,473 - MPMX19_05878 0.55 -0.6
8,473 - MPMX19_05878 0.55 -0.5
8,560 - MPMX19_05878 0.66 -1.6
8,560 - MPMX19_05878 0.66 -2.2
8,646 + MPMX19_05878 0.77 -0.2
8,646 + MPMX19_05878 0.77 -0.5
8,646 + MPMX19_05878 0.77 -3.3
8,646 + MPMX19_05878 0.77 +0.5
8,646 + MPMX19_05878 0.77 +0.1
8,646 + MPMX19_05878 0.77 +0.9
8,646 + MPMX19_05878 0.77 -0.5
8,647 - MPMX19_05878 0.77 -1.1
8,647 - MPMX19_05878 0.77 -0.1
8,647 - MPMX19_05878 0.77 +0.2
8,647 - MPMX19_05878 0.77 -0.8
8,647 - MPMX19_05878 0.77 -1.1
8,647 - MPMX19_05878 0.77 -0.9
8,870 + -0.0
8,870 + -0.9
8,871 - -0.0
8,871 - +0.4
8,885 + -1.0
8,885 + -0.5
8,886 - +0.2
8,957 + MPMX19_05879 0.11 -0.9
8,957 + MPMX19_05879 0.11 -1.2
8,957 + MPMX19_05879 0.11 -0.7
8,957 + MPMX19_05879 0.11 -0.4
8,957 + MPMX19_05879 0.11 +0.5
8,957 + MPMX19_05879 0.11 -0.6
8,958 - MPMX19_05879 0.11 -1.2
8,958 - MPMX19_05879 0.11 -0.1

Or see this region's nucleotide sequence