Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05875

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05873 and MPMX19_05874 are separated by 171 nucleotidesMPMX19_05874 and MPMX19_05875 overlap by 4 nucleotidesMPMX19_05875 and MPMX19_05876 are separated by 12 nucleotidesMPMX19_05876 and MPMX19_05877 are separated by 31 nucleotides MPMX19_05873: MPMX19_05873 - D-alanyl-D-alanine carboxypeptidase DacA, at 2,959 to 4,209 _05873 MPMX19_05874: MPMX19_05874 - 2-keto-4-pentenoate hydratase, at 4,381 to 5,118 _05874 MPMX19_05875: MPMX19_05875 - Catabolite control protein A, at 5,115 to 6,215 _05875 MPMX19_05876: MPMX19_05876 - 2-ketogluconate reductase, at 6,228 to 7,166 _05876 MPMX19_05877: MPMX19_05877 - Glutamine transport ATP-binding protein GlnQ, at 7,198 to 7,986 _05877 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.578 kb on + strand, within MPMX19_05875at 5.578 kb on + strand, within MPMX19_05875at 5.579 kb on - strand, within MPMX19_05875at 5.686 kb on + strand, within MPMX19_05875at 5.687 kb on - strand, within MPMX19_05875at 5.687 kb on - strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.197 kb on + strandat 6.198 kb on - strandat 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.364 kb on + strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.365 kb on - strand, within MPMX19_05876at 6.622 kb on + strand, within MPMX19_05876at 6.623 kb on - strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.655 kb on + strand, within MPMX19_05876at 6.656 kb on - strand, within MPMX19_05876at 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.099 kb on + strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.100 kb on - strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.166 kb on + strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strandat 7.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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4,373 + -0.5
4,373 + +0.6
4,373 + -0.1
4,373 + -0.3
4,805 + MPMX19_05874 0.57 -1.3
4,805 + MPMX19_05874 0.57 +0.3
4,805 + MPMX19_05874 0.57 -0.0
4,806 - MPMX19_05874 0.58 -0.0
4,806 - MPMX19_05874 0.58 +0.2
4,806 - MPMX19_05874 0.58 -1.0
4,806 - MPMX19_05874 0.58 +0.7
5,024 + MPMX19_05874 0.87 +0.1
5,024 + MPMX19_05874 0.87 -1.3
5,024 + MPMX19_05874 0.87 +0.5
5,024 + MPMX19_05874 0.87 -1.5
5,025 - MPMX19_05874 0.87 -1.4
5,025 - MPMX19_05874 0.87 +0.5
5,425 + MPMX19_05875 0.28 -1.2
5,425 + MPMX19_05875 0.28 +0.2
5,425 + MPMX19_05875 0.28 -1.1
5,425 + MPMX19_05875 0.28 +0.9
5,425 + MPMX19_05875 0.28 +0.1
5,425 + MPMX19_05875 0.28 +0.1
5,425 + MPMX19_05875 0.28 -0.1
5,425 + MPMX19_05875 0.28 +0.9
5,426 - MPMX19_05875 0.28 +0.1
5,426 - MPMX19_05875 0.28 -0.4
5,426 - MPMX19_05875 0.28 -0.1
5,426 - MPMX19_05875 0.28 +0.1
5,456 + MPMX19_05875 0.31 -0.8
5,456 + MPMX19_05875 0.31 +0.5
5,456 + MPMX19_05875 0.31 +2.1
5,456 + MPMX19_05875 0.31 +0.3
5,456 + MPMX19_05875 0.31 -1.8
5,456 + MPMX19_05875 0.31 -0.4
5,457 - MPMX19_05875 0.31 +0.0
5,457 - MPMX19_05875 0.31 -1.5
5,457 - MPMX19_05875 0.31 -1.8
5,578 + MPMX19_05875 0.42 +1.5
5,578 + MPMX19_05875 0.42 -1.5
5,579 - MPMX19_05875 0.42 +0.5
5,686 + MPMX19_05875 0.52 -1.3
5,687 - MPMX19_05875 0.52 -1.0
5,687 - MPMX19_05875 0.52 +0.9
5,947 + MPMX19_05875 0.76 -0.3
5,947 + MPMX19_05875 0.76 -1.5
5,947 + MPMX19_05875 0.76 +0.1
5,947 + MPMX19_05875 0.76 -1.1
5,947 + MPMX19_05875 0.76 +0.9
5,947 + MPMX19_05875 0.76 -0.7
5,947 + MPMX19_05875 0.76 -0.2
5,947 + MPMX19_05875 0.76 +1.1
5,947 + MPMX19_05875 0.76 -0.5
5,947 + MPMX19_05875 0.76 -1.1
5,947 + MPMX19_05875 0.76 -2.5
5,947 + MPMX19_05875 0.76 +0.2
5,948 - MPMX19_05875 0.76 -0.8
5,948 - MPMX19_05875 0.76 -0.6
5,948 - MPMX19_05875 0.76 +0.5
5,948 - MPMX19_05875 0.76 -0.9
5,948 - MPMX19_05875 0.76 -0.6
5,948 - MPMX19_05875 0.76 -0.2
6,028 + MPMX19_05875 0.83 +0.2
6,028 + MPMX19_05875 0.83 -0.4
6,028 + MPMX19_05875 0.83 +1.5
6,028 + MPMX19_05875 0.83 -0.8
6,028 + MPMX19_05875 0.83 -1.9
6,028 + MPMX19_05875 0.83 -0.5
6,028 + MPMX19_05875 0.83 +1.3
6,028 + MPMX19_05875 0.83 +1.1
6,028 + MPMX19_05875 0.83 +0.9
6,028 + MPMX19_05875 0.83 -0.9
6,028 + MPMX19_05875 0.83 -0.3
6,028 + MPMX19_05875 0.83 +0.3
6,028 + MPMX19_05875 0.83 +2.2
6,028 + MPMX19_05875 0.83 -0.8
6,028 + MPMX19_05875 0.83 -1.6
6,029 - MPMX19_05875 0.83 +0.1
6,029 - MPMX19_05875 0.83 +0.1
6,029 - MPMX19_05875 0.83 -0.6
6,029 - MPMX19_05875 0.83 +0.2
6,029 - MPMX19_05875 0.83 +0.1
6,029 - MPMX19_05875 0.83 -0.5
6,029 - MPMX19_05875 0.83 -1.7
6,029 - MPMX19_05875 0.83 -0.9
6,029 - MPMX19_05875 0.83 -0.1
6,029 - MPMX19_05875 0.83 +0.7
6,029 - MPMX19_05875 0.83 +0.1
6,034 + MPMX19_05875 0.83 +0.3
6,034 + MPMX19_05875 0.83 +0.1
6,034 + MPMX19_05875 0.83 +1.4
6,034 + MPMX19_05875 0.83 +0.1
6,034 + MPMX19_05875 0.83 -0.9
6,034 + MPMX19_05875 0.83 +0.6
6,035 - MPMX19_05875 0.84 +0.5
6,035 - MPMX19_05875 0.84 -1.7
6,035 - MPMX19_05875 0.84 +0.3
6,035 - MPMX19_05875 0.84 -1.4
6,197 + -0.7
6,198 - +0.3
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 -0.0
6,364 + MPMX19_05876 0.14 +0.9
6,364 + MPMX19_05876 0.14 -1.1
6,364 + MPMX19_05876 0.14 -0.9
6,364 + MPMX19_05876 0.14 -0.9
6,364 + MPMX19_05876 0.14 -1.3
6,364 + MPMX19_05876 0.14 +0.7
6,365 - MPMX19_05876 0.15 -1.0
6,365 - MPMX19_05876 0.15 +0.1
6,365 - MPMX19_05876 0.15 +0.6
6,365 - MPMX19_05876 0.15 -0.4
6,365 - MPMX19_05876 0.15 +0.7
6,365 - MPMX19_05876 0.15 +0.6
6,365 - MPMX19_05876 0.15 -1.7
6,365 - MPMX19_05876 0.15 +1.5
6,365 - MPMX19_05876 0.15 +0.7
6,622 + MPMX19_05876 0.42 -0.8
6,623 - MPMX19_05876 0.42 -1.1
6,655 + MPMX19_05876 0.45 -0.9
6,655 + MPMX19_05876 0.45 +0.2
6,655 + MPMX19_05876 0.45 -0.8
6,655 + MPMX19_05876 0.45 +1.0
6,656 - MPMX19_05876 0.46 -0.9
7,099 + +0.4
7,099 + -0.0
7,099 + -1.4
7,099 + +0.5
7,099 + -1.5
7,099 + -0.3
7,099 + +0.1
7,099 + -0.5
7,099 + -0.7
7,099 + -2.2
7,099 + +0.3
7,099 + -1.3
7,099 + +0.9
7,099 + +0.5
7,100 - -1.7
7,100 - +1.9
7,100 - +0.7
7,100 - +0.1
7,100 - -0.5
7,100 - +0.2
7,100 - -0.9
7,100 - -1.0
7,166 + -0.9
7,166 + +0.5
7,166 + -1.3
7,166 + +0.1
7,166 + -0.1
7,166 + -0.3
7,167 - +0.6
7,167 - -0.1
7,167 - -0.3
7,167 - -0.7
7,167 - +2.9
7,167 - -0.1
7,167 - -2.7
7,167 - -0.0
7,167 - +0.2
7,167 - -0.3
7,167 - -0.5
7,167 - -1.7

Or see this region's nucleotide sequence