Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05860 and MPMX19_05861 overlap by 1 nucleotides MPMX19_05861 and MPMX19_05862 are separated by 5 nucleotides MPMX19_05862 and MPMX19_05863 are separated by 23 nucleotides MPMX19_05863 and MPMX19_05864 are separated by 5 nucleotides
MPMX19_05860: MPMX19_05860 - 3-oxoadipate enol-lactonase 2, at 595,253 to 596,050
_05860
MPMX19_05861: MPMX19_05861 - hypothetical protein, at 596,050 to 596,463
_05861
MPMX19_05862: MPMX19_05862 - 3-carboxy-cis,cis-muconate cycloisomerase, at 596,469 to 597,839
_05862
MPMX19_05863: MPMX19_05863 - Protocatechuate 3,4-dioxygenase beta chain, at 597,863 to 598,585
_05863
MPMX19_05864: MPMX19_05864 - Protocatechuate 3,4-dioxygenase alpha chain, at 598,591 to 599,148
_05864
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 595.769 kb on + strand, within MPMX19_05860 at 595.769 kb on + strand, within MPMX19_05860 at 595.770 kb on - strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.370 kb on + strand, within MPMX19_05861 at 596.370 kb on + strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.371 kb on - strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.374 kb on + strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.375 kb on - strand, within MPMX19_05861 at 596.406 kb on - strand, within MPMX19_05861 at 596.425 kb on + strand at 596.425 kb on + strand at 596.426 kb on - strand at 596.426 kb on - strand at 596.426 kb on - strand at 596.554 kb on + strand at 596.554 kb on + strand at 596.554 kb on + strand at 596.554 kb on + strand at 596.554 kb on + strand at 596.554 kb on + strand at 596.555 kb on - strand at 596.555 kb on - strand at 596.555 kb on - strand at 596.664 kb on + strand, within MPMX19_05862 at 596.664 kb on + strand, within MPMX19_05862 at 596.664 kb on + strand, within MPMX19_05862 at 596.664 kb on + strand, within MPMX19_05862 at 596.665 kb on - strand, within MPMX19_05862 at 596.775 kb on + strand, within MPMX19_05862 at 596.775 kb on + strand, within MPMX19_05862 at 596.775 kb on + strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 596.776 kb on - strand, within MPMX19_05862 at 597.766 kb on - strand at 597.766 kb on - strand at 597.766 kb on - strand at 597.766 kb on - strand at 597.929 kb on + strand at 597.929 kb on + strand at 597.929 kb on + strand at 597.929 kb on + strand at 597.929 kb on + strand at 597.929 kb on + strand at 597.930 kb on - strand at 597.930 kb on - strand at 597.930 kb on - strand at 597.930 kb on - strand at 597.930 kb on - strand at 597.944 kb on + strand, within MPMX19_05863 at 597.944 kb on + strand, within MPMX19_05863 at 597.944 kb on + strand, within MPMX19_05863 at 597.945 kb on - strand, within MPMX19_05863 at 597.945 kb on - strand, within MPMX19_05863 at 597.945 kb on - strand, within MPMX19_05863 at 598.196 kb on + strand, within MPMX19_05863 at 598.196 kb on + strand, within MPMX19_05863 at 598.196 kb on + strand, within MPMX19_05863 at 598.196 kb on + strand, within MPMX19_05863 at 598.196 kb on + strand, within MPMX19_05863 at 598.197 kb on - strand, within MPMX19_05863 at 598.197 kb on - strand, within MPMX19_05863 at 598.197 kb on - strand, within MPMX19_05863 at 598.197 kb on - strand, within MPMX19_05863 at 598.313 kb on + strand, within MPMX19_05863 at 598.313 kb on + strand, within MPMX19_05863 at 598.313 kb on + strand, within MPMX19_05863 at 598.313 kb on + strand, within MPMX19_05863 at 598.314 kb on - strand, within MPMX19_05863 at 598.314 kb on - strand, within MPMX19_05863 at 598.409 kb on + strand, within MPMX19_05863 at 598.409 kb on + strand, within MPMX19_05863 at 598.409 kb on + strand, within MPMX19_05863 at 598.409 kb on + strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.410 kb on - strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.448 kb on + strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.449 kb on - strand, within MPMX19_05863 at 598.533 kb on - strand at 598.636 kb on + strand at 598.637 kb on - strand at 598.637 kb on - strand at 598.645 kb on + strand at 598.646 kb on - strand at 598.646 kb on - strand at 598.666 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.747 kb on + strand, within MPMX19_05864 at 598.748 kb on - strand, within MPMX19_05864 at 598.748 kb on - strand, within MPMX19_05864 at 598.748 kb on - strand, within MPMX19_05864 at 598.748 kb on - strand, within MPMX19_05864 at 598.748 kb on - strand, within MPMX19_05864
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 595,769 + MPMX19_05860 0.65 -0.9 595,769 + MPMX19_05860 0.65 +0.2 595,770 - MPMX19_05860 0.65 -0.8 595,805 + MPMX19_05860 0.69 +0.2 595,805 + MPMX19_05860 0.69 -1.2 595,805 + MPMX19_05860 0.69 -0.6 595,805 + MPMX19_05860 0.69 +0.5 595,805 + MPMX19_05860 0.69 -1.2 595,805 + MPMX19_05860 0.69 +0.6 595,805 + MPMX19_05860 0.69 +1.5 595,805 + MPMX19_05860 0.69 -0.3 595,805 + MPMX19_05860 0.69 +0.4 595,805 + MPMX19_05860 0.69 -1.0 595,805 + MPMX19_05860 0.69 +1.3 595,805 + MPMX19_05860 0.69 +0.1 595,805 + MPMX19_05860 0.69 +1.6 595,806 - MPMX19_05860 0.69 -0.4 595,806 - MPMX19_05860 0.69 -0.2 595,806 - MPMX19_05860 0.69 +0.4 595,806 - MPMX19_05860 0.69 -0.7 595,806 - MPMX19_05860 0.69 +0.5 595,806 - MPMX19_05860 0.69 -0.1 595,806 - MPMX19_05860 0.69 +0.6 595,806 - MPMX19_05860 0.69 -1.8 595,806 - MPMX19_05860 0.69 -1.9 595,806 - MPMX19_05860 0.69 -2.2 595,806 - MPMX19_05860 0.69 -1.0 595,806 - MPMX19_05860 0.69 -1.0 596,083 + +0.2 596,083 + -0.8 596,083 + -1.9 596,083 + +0.6 596,083 + -2.0 596,083 + -0.3 596,084 - -0.8 596,084 - -1.2 596,084 - -0.4 596,084 - -1.2 596,084 - -1.2 596,084 - -0.4 596,370 + MPMX19_05861 0.77 -0.8 596,370 + MPMX19_05861 0.77 -1.0 596,371 - MPMX19_05861 0.78 -1.6 596,371 - MPMX19_05861 0.78 -1.5 596,371 - MPMX19_05861 0.78 -0.2 596,371 - MPMX19_05861 0.78 -0.9 596,371 - MPMX19_05861 0.78 +0.2 596,371 - MPMX19_05861 0.78 -0.8 596,374 + MPMX19_05861 0.78 +0.5 596,374 + MPMX19_05861 0.78 -0.2 596,374 + MPMX19_05861 0.78 -0.5 596,374 + MPMX19_05861 0.78 -0.4 596,374 + MPMX19_05861 0.78 +0.2 596,374 + MPMX19_05861 0.78 +1.1 596,374 + MPMX19_05861 0.78 -2.1 596,374 + MPMX19_05861 0.78 -0.2 596,374 + MPMX19_05861 0.78 -0.9 596,374 + MPMX19_05861 0.78 +0.8 596,374 + MPMX19_05861 0.78 -0.5 596,374 + MPMX19_05861 0.78 +1.0 596,374 + MPMX19_05861 0.78 +0.4 596,374 + MPMX19_05861 0.78 +0.0 596,374 + MPMX19_05861 0.78 -0.9 596,374 + MPMX19_05861 0.78 +1.4 596,374 + MPMX19_05861 0.78 -0.6 596,374 + MPMX19_05861 0.78 +1.0 596,374 + MPMX19_05861 0.78 -0.7 596,374 + MPMX19_05861 0.78 -0.8 596,374 + MPMX19_05861 0.78 -0.2 596,374 + MPMX19_05861 0.78 -0.9 596,374 + MPMX19_05861 0.78 +0.6 596,374 + MPMX19_05861 0.78 +0.7 596,374 + MPMX19_05861 0.78 +0.0 596,374 + MPMX19_05861 0.78 +0.5 596,374 + MPMX19_05861 0.78 +0.8 596,374 + MPMX19_05861 0.78 +0.8 596,374 + MPMX19_05861 0.78 -0.7 596,374 + MPMX19_05861 0.78 -0.2 596,374 + MPMX19_05861 0.78 -0.1 596,374 + MPMX19_05861 0.78 -1.6 596,374 + MPMX19_05861 0.78 -0.3 596,375 - MPMX19_05861 0.79 +0.2 596,375 - MPMX19_05861 0.79 -0.2 596,375 - MPMX19_05861 0.79 -1.7 596,375 - MPMX19_05861 0.79 +0.3 596,375 - MPMX19_05861 0.79 -0.8 596,375 - MPMX19_05861 0.79 -0.4 596,375 - MPMX19_05861 0.79 +0.4 596,375 - MPMX19_05861 0.79 +0.2 596,375 - MPMX19_05861 0.79 -0.6 596,375 - MPMX19_05861 0.79 -0.6 596,375 - MPMX19_05861 0.79 -0.3 596,375 - MPMX19_05861 0.79 +0.1 596,375 - MPMX19_05861 0.79 +0.6 596,375 - MPMX19_05861 0.79 -1.4 596,375 - MPMX19_05861 0.79 -2.9 596,375 - MPMX19_05861 0.79 -0.3 596,375 - MPMX19_05861 0.79 -0.7 596,375 - MPMX19_05861 0.79 -1.8 596,375 - MPMX19_05861 0.79 -0.6 596,375 - MPMX19_05861 0.79 +0.6 596,406 - MPMX19_05861 0.86 +1.0 596,425 + +1.0 596,425 + +1.0 596,426 - -0.5 596,426 - -1.1 596,426 - +0.6 596,554 + -0.3 596,554 + -1.2 596,554 + +0.0 596,554 + +0.4 596,554 + +0.4 596,554 + -0.9 596,555 - -0.8 596,555 - +0.5 596,555 - -1.4 596,664 + MPMX19_05862 0.14 -0.8 596,664 + MPMX19_05862 0.14 -0.2 596,664 + MPMX19_05862 0.14 -1.5 596,664 + MPMX19_05862 0.14 -0.7 596,665 - MPMX19_05862 0.14 -1.7 596,775 + MPMX19_05862 0.22 +0.0 596,775 + MPMX19_05862 0.22 -2.0 596,775 + MPMX19_05862 0.22 -1.6 596,776 - MPMX19_05862 0.22 -0.1 596,776 - MPMX19_05862 0.22 -1.0 596,776 - MPMX19_05862 0.22 -1.4 596,776 - MPMX19_05862 0.22 -0.9 596,776 - MPMX19_05862 0.22 -1.7 596,776 - MPMX19_05862 0.22 -0.2 596,776 - MPMX19_05862 0.22 +0.0 597,766 - -1.5 597,766 - -1.0 597,766 - -0.4 597,766 - -1.2 597,929 + +0.1 597,929 + +0.6 597,929 + -1.5 597,929 + -0.9 597,929 + -0.4 597,929 + -0.2 597,930 - -1.7 597,930 - -1.5 597,930 - -0.7 597,930 - -1.5 597,930 - -0.1 597,944 + MPMX19_05863 0.11 -0.6 597,944 + MPMX19_05863 0.11 +1.2 597,944 + MPMX19_05863 0.11 -1.7 597,945 - MPMX19_05863 0.11 +0.0 597,945 - MPMX19_05863 0.11 +0.6 597,945 - MPMX19_05863 0.11 +0.4 598,196 + MPMX19_05863 0.46 +0.5 598,196 + MPMX19_05863 0.46 -0.5 598,196 + MPMX19_05863 0.46 +0.3 598,196 + MPMX19_05863 0.46 -0.4 598,196 + MPMX19_05863 0.46 +1.8 598,197 - MPMX19_05863 0.46 -2.0 598,197 - MPMX19_05863 0.46 -2.0 598,197 - MPMX19_05863 0.46 -0.9 598,197 - MPMX19_05863 0.46 -1.2 598,313 + MPMX19_05863 0.62 -1.1 598,313 + MPMX19_05863 0.62 -0.8 598,313 + MPMX19_05863 0.62 -1.7 598,313 + MPMX19_05863 0.62 -0.0 598,314 - MPMX19_05863 0.62 -0.4 598,314 - MPMX19_05863 0.62 -2.1 598,409 + MPMX19_05863 0.76 -0.3 598,409 + MPMX19_05863 0.76 -0.1 598,409 + MPMX19_05863 0.76 -0.9 598,409 + MPMX19_05863 0.76 -0.2 598,410 - MPMX19_05863 0.76 +0.2 598,410 - MPMX19_05863 0.76 -0.5 598,410 - MPMX19_05863 0.76 +0.0 598,410 - MPMX19_05863 0.76 -0.8 598,410 - MPMX19_05863 0.76 +0.9 598,410 - MPMX19_05863 0.76 -2.3 598,410 - MPMX19_05863 0.76 -0.8 598,448 + MPMX19_05863 0.81 +1.0 598,448 + MPMX19_05863 0.81 +0.6 598,448 + MPMX19_05863 0.81 +0.2 598,448 + MPMX19_05863 0.81 -0.7 598,448 + MPMX19_05863 0.81 +0.7 598,448 + MPMX19_05863 0.81 -0.9 598,448 + MPMX19_05863 0.81 -0.1 598,448 + MPMX19_05863 0.81 -0.9 598,448 + MPMX19_05863 0.81 -1.0 598,448 + MPMX19_05863 0.81 -1.2 598,448 + MPMX19_05863 0.81 -0.4 598,448 + MPMX19_05863 0.81 -0.8 598,448 + MPMX19_05863 0.81 +0.0 598,448 + MPMX19_05863 0.81 +0.8 598,448 + MPMX19_05863 0.81 +0.2 598,449 - MPMX19_05863 0.81 -0.8 598,449 - MPMX19_05863 0.81 -0.4 598,449 - MPMX19_05863 0.81 -0.3 598,449 - MPMX19_05863 0.81 +0.3 598,449 - MPMX19_05863 0.81 +0.8 598,449 - MPMX19_05863 0.81 -1.4 598,449 - MPMX19_05863 0.81 -0.3 598,449 - MPMX19_05863 0.81 +0.6 598,449 - MPMX19_05863 0.81 -0.4 598,533 - -1.7 598,636 + -0.5 598,637 - -1.0 598,637 - +0.3 598,645 + -0.9 598,646 - -0.2 598,646 - +0.4 598,666 + MPMX19_05864 0.13 -1.3 598,747 + MPMX19_05864 0.28 -0.8 598,747 + MPMX19_05864 0.28 -1.2 598,747 + MPMX19_05864 0.28 -0.8 598,747 + MPMX19_05864 0.28 +1.5 598,747 + MPMX19_05864 0.28 +0.0 598,747 + MPMX19_05864 0.28 +0.6 598,747 + MPMX19_05864 0.28 -1.5 598,747 + MPMX19_05864 0.28 +0.1 598,748 - MPMX19_05864 0.28 -1.2 598,748 - MPMX19_05864 0.28 -0.6 598,748 - MPMX19_05864 0.28 +0.5 598,748 - MPMX19_05864 0.28 -0.8 598,748 - MPMX19_05864 0.28 -1.2
Or see this region's nucleotide sequence