Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05848

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05847 and MPMX19_05848 are separated by 20 nucleotidesMPMX19_05848 and MPMX19_05849 are separated by 35 nucleotides MPMX19_05847: MPMX19_05847 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 580,686 to 581,861 _05847 MPMX19_05848: MPMX19_05848 - Glutamine transport ATP-binding protein GlnQ, at 581,882 to 582,625 _05848 MPMX19_05849: MPMX19_05849 - TorCAD operon transcriptional regulatory protein TorR, at 582,661 to 583,368 _05849 Position (kb) 581 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.040 kb on + strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.041 kb on - strand, within MPMX19_05847at 581.046 kb on + strand, within MPMX19_05847at 581.046 kb on + strand, within MPMX19_05847at 581.046 kb on + strand, within MPMX19_05847at 581.047 kb on - strand, within MPMX19_05847at 581.047 kb on - strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.208 kb on + strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.209 kb on - strand, within MPMX19_05847at 581.544 kb on + strand, within MPMX19_05847at 581.545 kb on - strand, within MPMX19_05847at 581.545 kb on - strand, within MPMX19_05847at 581.545 kb on - strand, within MPMX19_05847at 581.574 kb on + strand, within MPMX19_05847at 581.574 kb on + strand, within MPMX19_05847at 581.574 kb on + strand, within MPMX19_05847at 581.574 kb on + strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.575 kb on - strand, within MPMX19_05847at 581.694 kb on + strand, within MPMX19_05847at 581.694 kb on + strand, within MPMX19_05847at 581.694 kb on + strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.695 kb on - strand, within MPMX19_05847at 581.748 kb on + strandat 581.748 kb on + strandat 581.749 kb on - strandat 581.749 kb on - strandat 581.749 kb on - strandat 581.749 kb on - strandat 581.749 kb on - strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.763 kb on + strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.764 kb on - strandat 581.814 kb on + strandat 581.815 kb on - strandat 581.847 kb on + strandat 581.847 kb on + strandat 581.847 kb on + strandat 581.847 kb on + strandat 581.847 kb on + strandat 581.848 kb on - strandat 581.848 kb on - strandat 581.848 kb on - strandat 581.848 kb on - strandat 581.927 kb on + strandat 581.928 kb on - strandat 581.936 kb on + strandat 581.936 kb on + strandat 581.936 kb on + strandat 581.936 kb on + strandat 581.937 kb on - strandat 581.937 kb on - strandat 581.937 kb on - strandat 581.937 kb on - strandat 581.937 kb on - strandat 581.937 kb on - strandat 581.937 kb on - strandat 582.254 kb on + strand, within MPMX19_05848at 582.254 kb on + strand, within MPMX19_05848at 582.254 kb on + strand, within MPMX19_05848at 582.254 kb on + strand, within MPMX19_05848at 582.254 kb on + strand, within MPMX19_05848at 582.254 kb on + strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.255 kb on - strand, within MPMX19_05848at 582.511 kb on + strand, within MPMX19_05848at 582.511 kb on + strand, within MPMX19_05848at 582.511 kb on + strand, within MPMX19_05848at 582.512 kb on - strand, within MPMX19_05848at 582.512 kb on - strand, within MPMX19_05848at 582.512 kb on - strand, within MPMX19_05848at 582.512 kb on - strand, within MPMX19_05848at 582.512 kb on - strand, within MPMX19_05848at 582.630 kb on + strandat 582.630 kb on + strandat 582.630 kb on + strandat 582.630 kb on + strandat 582.631 kb on - strandat 582.631 kb on - strandat 582.631 kb on - strandat 582.631 kb on - strandat 582.631 kb on - strandat 582.631 kb on - strandat 582.721 kb on + strandat 582.721 kb on + strandat 582.721 kb on + strandat 582.721 kb on + strandat 582.722 kb on - strandat 582.722 kb on - strandat 582.722 kb on - strandat 582.722 kb on - strandat 582.955 kb on + strand, within MPMX19_05849at 582.955 kb on + strand, within MPMX19_05849at 582.956 kb on - strand, within MPMX19_05849at 582.956 kb on - strand, within MPMX19_05849at 582.956 kb on - strand, within MPMX19_05849at 582.956 kb on - strand, within MPMX19_05849at 582.956 kb on - strand, within MPMX19_05849at 583.195 kb on + strand, within MPMX19_05849at 583.196 kb on - strand, within MPMX19_05849at 583.196 kb on - strand, within MPMX19_05849at 583.196 kb on - strand, within MPMX19_05849at 583.333 kb on + strandat 583.333 kb on + strandat 583.333 kb on + strandat 583.333 kb on + strandat 583.333 kb on + strandat 583.333 kb on + strandat 583.334 kb on - strandat 583.334 kb on - strandat 583.334 kb on - strandat 583.334 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.490 kb on - strandat 583.535 kb on + strandat 583.535 kb on + strandat 583.535 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strandat 583.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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581,040 + MPMX19_05847 0.30 +0.8
581,040 + MPMX19_05847 0.30 -0.7
581,040 + MPMX19_05847 0.30 -0.7
581,040 + MPMX19_05847 0.30 +0.8
581,040 + MPMX19_05847 0.30 +0.3
581,040 + MPMX19_05847 0.30 -0.9
581,040 + MPMX19_05847 0.30 -1.6
581,041 - MPMX19_05847 0.30 -0.0
581,041 - MPMX19_05847 0.30 -0.8
581,041 - MPMX19_05847 0.30 -0.5
581,041 - MPMX19_05847 0.30 -1.0
581,041 - MPMX19_05847 0.30 -0.1
581,041 - MPMX19_05847 0.30 -0.8
581,046 + MPMX19_05847 0.31 -1.2
581,046 + MPMX19_05847 0.31 +0.3
581,046 + MPMX19_05847 0.31 -1.8
581,047 - MPMX19_05847 0.31 -0.9
581,047 - MPMX19_05847 0.31 -0.3
581,208 + MPMX19_05847 0.44 +0.6
581,208 + MPMX19_05847 0.44 -0.4
581,208 + MPMX19_05847 0.44 +0.2
581,208 + MPMX19_05847 0.44 -0.4
581,208 + MPMX19_05847 0.44 +0.3
581,208 + MPMX19_05847 0.44 -0.6
581,208 + MPMX19_05847 0.44 +0.8
581,208 + MPMX19_05847 0.44 +1.1
581,208 + MPMX19_05847 0.44 -2.5
581,208 + MPMX19_05847 0.44 -0.2
581,208 + MPMX19_05847 0.44 +0.6
581,208 + MPMX19_05847 0.44 +1.3
581,208 + MPMX19_05847 0.44 +0.2
581,208 + MPMX19_05847 0.44 -0.7
581,208 + MPMX19_05847 0.44 -0.9
581,209 - MPMX19_05847 0.44 -0.2
581,209 - MPMX19_05847 0.44 -0.8
581,209 - MPMX19_05847 0.44 +0.6
581,209 - MPMX19_05847 0.44 -2.0
581,209 - MPMX19_05847 0.44 -1.2
581,209 - MPMX19_05847 0.44 -0.4
581,209 - MPMX19_05847 0.44 -0.1
581,209 - MPMX19_05847 0.44 -1.4
581,209 - MPMX19_05847 0.44 -0.4
581,209 - MPMX19_05847 0.44 -0.1
581,209 - MPMX19_05847 0.44 -0.8
581,209 - MPMX19_05847 0.44 -2.0
581,209 - MPMX19_05847 0.44 -1.9
581,209 - MPMX19_05847 0.44 -1.3
581,209 - MPMX19_05847 0.44 -0.5
581,209 - MPMX19_05847 0.44 +0.5
581,209 - MPMX19_05847 0.44 -0.1
581,209 - MPMX19_05847 0.44 -1.0
581,209 - MPMX19_05847 0.44 +0.9
581,209 - MPMX19_05847 0.44 -0.3
581,209 - MPMX19_05847 0.44 -0.2
581,209 - MPMX19_05847 0.44 -1.2
581,209 - MPMX19_05847 0.44 -0.4
581,209 - MPMX19_05847 0.44 +1.1
581,209 - MPMX19_05847 0.44 +0.3
581,209 - MPMX19_05847 0.44 +0.2
581,209 - MPMX19_05847 0.44 +0.7
581,209 - MPMX19_05847 0.44 +0.1
581,209 - MPMX19_05847 0.44 +0.0
581,209 - MPMX19_05847 0.44 +0.7
581,209 - MPMX19_05847 0.44 -1.0
581,209 - MPMX19_05847 0.44 -1.1
581,209 - MPMX19_05847 0.44 -1.8
581,209 - MPMX19_05847 0.44 +0.2
581,209 - MPMX19_05847 0.44 -0.8
581,209 - MPMX19_05847 0.44 -1.4
581,209 - MPMX19_05847 0.44 -1.7
581,209 - MPMX19_05847 0.44 +0.0
581,209 - MPMX19_05847 0.44 -1.2
581,209 - MPMX19_05847 0.44 +0.1
581,209 - MPMX19_05847 0.44 -0.2
581,544 + MPMX19_05847 0.73 +0.3
581,545 - MPMX19_05847 0.73 -2.4
581,545 - MPMX19_05847 0.73 -0.8
581,545 - MPMX19_05847 0.73 +0.3
581,574 + MPMX19_05847 0.76 -1.5
581,574 + MPMX19_05847 0.76 -1.4
581,574 + MPMX19_05847 0.76 +0.6
581,574 + MPMX19_05847 0.76 +0.4
581,575 - MPMX19_05847 0.76 -1.2
581,575 - MPMX19_05847 0.76 +0.8
581,575 - MPMX19_05847 0.76 -0.1
581,575 - MPMX19_05847 0.76 +0.7
581,575 - MPMX19_05847 0.76 -0.6
581,575 - MPMX19_05847 0.76 -0.5
581,575 - MPMX19_05847 0.76 -1.0
581,694 + MPMX19_05847 0.86 -0.2
581,694 + MPMX19_05847 0.86 -0.5
581,694 + MPMX19_05847 0.86 -0.4
581,695 - MPMX19_05847 0.86 -0.4
581,695 - MPMX19_05847 0.86 -1.3
581,695 - MPMX19_05847 0.86 -0.1
581,695 - MPMX19_05847 0.86 -2.4
581,695 - MPMX19_05847 0.86 -0.4
581,695 - MPMX19_05847 0.86 -0.3
581,695 - MPMX19_05847 0.86 -0.5
581,695 - MPMX19_05847 0.86 -0.3
581,748 + +0.2
581,748 + +0.3
581,749 - -0.2
581,749 - -0.1
581,749 - -1.2
581,749 - -1.4
581,749 - +0.3
581,763 + -0.1
581,763 + -0.7
581,763 + +0.3
581,763 + -1.1
581,763 + +0.8
581,763 + -0.1
581,763 + -0.6
581,764 - -0.4
581,764 - -0.1
581,764 - +1.8
581,764 - -0.1
581,764 - +0.5
581,764 - +1.1
581,764 - +0.0
581,764 - -1.5
581,764 - -0.9
581,764 - -1.1
581,764 - +0.6
581,764 - -1.1
581,764 - -2.4
581,764 - -1.2
581,764 - -0.2
581,764 - -0.4
581,814 + -1.1
581,815 - -0.3
581,847 + -0.6
581,847 + +0.2
581,847 + -0.4
581,847 + -0.5
581,847 + -1.5
581,848 - -0.8
581,848 - -1.8
581,848 - -0.3
581,848 - +1.2
581,927 + -1.0
581,928 - -1.3
581,936 + -1.1
581,936 + -0.0
581,936 + +0.1
581,936 + -0.5
581,937 - +0.2
581,937 - -0.6
581,937 - -2.4
581,937 - -1.5
581,937 - -0.9
581,937 - +0.7
581,937 - -0.4
582,254 + MPMX19_05848 0.50 -0.2
582,254 + MPMX19_05848 0.50 -1.1
582,254 + MPMX19_05848 0.50 -1.0
582,254 + MPMX19_05848 0.50 +0.2
582,254 + MPMX19_05848 0.50 +0.3
582,254 + MPMX19_05848 0.50 +0.0
582,255 - MPMX19_05848 0.50 -1.2
582,255 - MPMX19_05848 0.50 -1.5
582,255 - MPMX19_05848 0.50 -0.3
582,255 - MPMX19_05848 0.50 +0.8
582,255 - MPMX19_05848 0.50 +0.4
582,255 - MPMX19_05848 0.50 -0.6
582,255 - MPMX19_05848 0.50 -0.4
582,255 - MPMX19_05848 0.50 -1.1
582,255 - MPMX19_05848 0.50 -3.1
582,255 - MPMX19_05848 0.50 -0.2
582,255 - MPMX19_05848 0.50 -1.3
582,511 + MPMX19_05848 0.85 -1.8
582,511 + MPMX19_05848 0.85 -0.9
582,511 + MPMX19_05848 0.85 -0.1
582,512 - MPMX19_05848 0.85 -0.0
582,512 - MPMX19_05848 0.85 -1.2
582,512 - MPMX19_05848 0.85 -0.1
582,512 - MPMX19_05848 0.85 -1.6
582,512 - MPMX19_05848 0.85 -2.8
582,630 + -1.8
582,630 + -0.6
582,630 + -1.1
582,630 + -1.2
582,631 - -1.9
582,631 - -0.1
582,631 - -0.1
582,631 - +0.1
582,631 - -2.1
582,631 - -0.6
582,721 + -1.2
582,721 + +0.2
582,721 + -0.0
582,721 + -0.4
582,722 - -0.4
582,722 - -0.8
582,722 - -1.0
582,722 - -1.0
582,955 + MPMX19_05849 0.42 +0.7
582,955 + MPMX19_05849 0.42 -0.5
582,956 - MPMX19_05849 0.42 -1.1
582,956 - MPMX19_05849 0.42 -0.5
582,956 - MPMX19_05849 0.42 -0.9
582,956 - MPMX19_05849 0.42 -0.9
582,956 - MPMX19_05849 0.42 -0.4
583,195 + MPMX19_05849 0.75 -0.2
583,196 - MPMX19_05849 0.76 +0.4
583,196 - MPMX19_05849 0.76 -1.0
583,196 - MPMX19_05849 0.76 +0.8
583,333 + -0.4
583,333 + -1.3
583,333 + -1.1
583,333 + -1.5
583,333 + +0.0
583,333 + -1.6
583,334 - -1.8
583,334 - -1.0
583,334 - -2.0
583,334 - +1.2
583,490 - +0.7
583,490 - -1.6
583,490 - -2.4
583,490 - -0.4
583,490 - -0.3
583,490 - -0.2
583,490 - -0.7
583,490 - +0.7
583,490 - +0.4
583,490 - -0.6
583,490 - -0.8
583,490 - -0.2
583,490 - -0.6
583,490 - +0.0
583,490 - +0.4
583,490 - -1.2
583,490 - -0.3
583,535 + +0.4
583,535 + -0.0
583,535 + +0.5
583,537 + -1.5
583,537 + -1.0
583,537 + -2.1
583,537 + -0.8
583,537 + -0.5
583,537 + +0.9
583,537 + -1.2
583,537 + -0.3
583,537 + -1.2
583,537 + -0.2
583,537 + -0.3

Or see this region's nucleotide sequence