Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05842

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05841 and MPMX19_05842 are separated by 21 nucleotidesMPMX19_05842 and MPMX19_05843 are separated by 203 nucleotides MPMX19_05841: MPMX19_05841 - hypothetical protein, at 572,856 to 574,739 _05841 MPMX19_05842: MPMX19_05842 - Inner membrane transport protein YdhP, at 574,761 to 576,038 _05842 MPMX19_05843: MPMX19_05843 - hypothetical protein, at 576,242 to 576,952 _05843 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 573.924 kb on + strand, within MPMX19_05841at 573.924 kb on + strand, within MPMX19_05841at 573.924 kb on + strand, within MPMX19_05841at 573.924 kb on + strand, within MPMX19_05841at 573.924 kb on + strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.925 kb on - strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.926 kb on + strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 573.927 kb on - strand, within MPMX19_05841at 574.066 kb on - strand, within MPMX19_05841at 574.066 kb on - strand, within MPMX19_05841at 574.092 kb on + strand, within MPMX19_05841at 574.093 kb on - strand, within MPMX19_05841at 574.093 kb on - strand, within MPMX19_05841at 574.093 kb on - strand, within MPMX19_05841at 574.151 kb on + strand, within MPMX19_05841at 574.151 kb on + strand, within MPMX19_05841at 574.151 kb on + strand, within MPMX19_05841at 574.152 kb on - strand, within MPMX19_05841at 574.152 kb on - strand, within MPMX19_05841at 574.425 kb on + strand, within MPMX19_05841at 574.425 kb on + strand, within MPMX19_05841at 574.425 kb on + strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 574.426 kb on - strand, within MPMX19_05841at 575.137 kb on + strand, within MPMX19_05842at 575.138 kb on - strand, within MPMX19_05842at 575.138 kb on - strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.317 kb on + strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.318 kb on - strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.323 kb on + strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.324 kb on - strand, within MPMX19_05842at 575.656 kb on + strand, within MPMX19_05842at 575.656 kb on + strand, within MPMX19_05842at 575.656 kb on + strand, within MPMX19_05842at 575.656 kb on + strand, within MPMX19_05842at 575.657 kb on - strand, within MPMX19_05842at 575.657 kb on - strand, within MPMX19_05842at 575.657 kb on - strand, within MPMX19_05842at 575.657 kb on - strand, within MPMX19_05842at 575.657 kb on - strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.707 kb on + strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.708 kb on - strand, within MPMX19_05842at 575.839 kb on + strand, within MPMX19_05842at 575.839 kb on + strand, within MPMX19_05842at 575.839 kb on + strand, within MPMX19_05842at 575.840 kb on - strand, within MPMX19_05842at 575.840 kb on - strand, within MPMX19_05842at 575.840 kb on - strand, within MPMX19_05842at 575.840 kb on - strand, within MPMX19_05842at 575.896 kb on + strand, within MPMX19_05842at 575.896 kb on + strand, within MPMX19_05842at 575.897 kb on - strand, within MPMX19_05842at 575.897 kb on - strand, within MPMX19_05842at 575.897 kb on - strand, within MPMX19_05842at 575.897 kb on - strand, within MPMX19_05842at 576.124 kb on + strandat 576.124 kb on + strandat 576.125 kb on - strandat 576.125 kb on - strandat 576.125 kb on - strandat 576.133 kb on - strandat 576.133 kb on - strandat 576.166 kb on - strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.202 kb on + strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.203 kb on - strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.243 kb on + strandat 576.244 kb on - strandat 576.244 kb on - strandat 576.244 kb on - strandat 576.244 kb on - strandat 576.952 kb on + strandat 576.952 kb on + strandat 576.952 kb on + strandat 576.952 kb on + strandat 576.953 kb on - strandat 576.953 kb on - strandat 576.953 kb on - strandat 576.953 kb on - strandat 576.953 kb on - strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on + strandat 577.008 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strandat 577.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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573,924 + MPMX19_05841 0.57 +0.2
573,924 + MPMX19_05841 0.57 -0.6
573,924 + MPMX19_05841 0.57 -1.0
573,924 + MPMX19_05841 0.57 -2.5
573,924 + MPMX19_05841 0.57 -1.4
573,925 - MPMX19_05841 0.57 +1.0
573,925 - MPMX19_05841 0.57 -0.2
573,925 - MPMX19_05841 0.57 +0.3
573,925 - MPMX19_05841 0.57 +0.8
573,925 - MPMX19_05841 0.57 +0.2
573,925 - MPMX19_05841 0.57 +0.5
573,925 - MPMX19_05841 0.57 +0.2
573,925 - MPMX19_05841 0.57 -0.8
573,926 + MPMX19_05841 0.57 +1.1
573,926 + MPMX19_05841 0.57 -0.8
573,926 + MPMX19_05841 0.57 -0.6
573,926 + MPMX19_05841 0.57 -0.1
573,926 + MPMX19_05841 0.57 +0.2
573,926 + MPMX19_05841 0.57 +2.1
573,926 + MPMX19_05841 0.57 -0.6
573,926 + MPMX19_05841 0.57 -1.1
573,926 + MPMX19_05841 0.57 -0.2
573,927 - MPMX19_05841 0.57 -2.1
573,927 - MPMX19_05841 0.57 -0.9
573,927 - MPMX19_05841 0.57 +0.1
573,927 - MPMX19_05841 0.57 +1.6
573,927 - MPMX19_05841 0.57 -0.6
573,927 - MPMX19_05841 0.57 +0.0
573,927 - MPMX19_05841 0.57 +0.3
573,927 - MPMX19_05841 0.57 +1.2
574,066 - MPMX19_05841 0.64 -1.1
574,066 - MPMX19_05841 0.64 +0.6
574,092 + MPMX19_05841 0.66 +1.3
574,093 - MPMX19_05841 0.66 +0.2
574,093 - MPMX19_05841 0.66 -0.5
574,093 - MPMX19_05841 0.66 -0.2
574,151 + MPMX19_05841 0.69 +0.1
574,151 + MPMX19_05841 0.69 -0.0
574,151 + MPMX19_05841 0.69 +0.3
574,152 - MPMX19_05841 0.69 +0.4
574,152 - MPMX19_05841 0.69 -0.9
574,425 + MPMX19_05841 0.83 +0.9
574,425 + MPMX19_05841 0.83 -1.0
574,425 + MPMX19_05841 0.83 +0.6
574,426 - MPMX19_05841 0.83 -1.4
574,426 - MPMX19_05841 0.83 -1.8
574,426 - MPMX19_05841 0.83 -0.7
574,426 - MPMX19_05841 0.83 -0.3
574,426 - MPMX19_05841 0.83 +0.4
574,426 - MPMX19_05841 0.83 +0.2
574,426 - MPMX19_05841 0.83 -1.0
574,426 - MPMX19_05841 0.83 -0.5
575,137 + MPMX19_05842 0.29 +0.8
575,138 - MPMX19_05842 0.29 -2.4
575,138 - MPMX19_05842 0.29 -1.0
575,317 + MPMX19_05842 0.44 -1.3
575,317 + MPMX19_05842 0.44 +0.8
575,317 + MPMX19_05842 0.44 -1.5
575,317 + MPMX19_05842 0.44 +0.4
575,317 + MPMX19_05842 0.44 +0.1
575,317 + MPMX19_05842 0.44 -0.8
575,317 + MPMX19_05842 0.44 -0.0
575,317 + MPMX19_05842 0.44 -0.5
575,317 + MPMX19_05842 0.44 -1.2
575,317 + MPMX19_05842 0.44 -1.9
575,317 + MPMX19_05842 0.44 -1.1
575,317 + MPMX19_05842 0.44 -1.2
575,317 + MPMX19_05842 0.44 -1.4
575,317 + MPMX19_05842 0.44 +1.2
575,317 + MPMX19_05842 0.44 -0.8
575,317 + MPMX19_05842 0.44 -0.5
575,317 + MPMX19_05842 0.44 -1.2
575,317 + MPMX19_05842 0.44 -0.3
575,317 + MPMX19_05842 0.44 -0.4
575,317 + MPMX19_05842 0.44 +2.5
575,317 + MPMX19_05842 0.44 -0.4
575,317 + MPMX19_05842 0.44 +0.4
575,317 + MPMX19_05842 0.44 -2.0
575,317 + MPMX19_05842 0.44 -0.3
575,317 + MPMX19_05842 0.44 +0.6
575,317 + MPMX19_05842 0.44 -1.9
575,317 + MPMX19_05842 0.44 -1.2
575,317 + MPMX19_05842 0.44 -0.5
575,317 + MPMX19_05842 0.44 +0.5
575,318 - MPMX19_05842 0.44 -1.6
575,318 - MPMX19_05842 0.44 -0.4
575,318 - MPMX19_05842 0.44 -0.3
575,318 - MPMX19_05842 0.44 +0.8
575,318 - MPMX19_05842 0.44 -0.1
575,318 - MPMX19_05842 0.44 -1.2
575,318 - MPMX19_05842 0.44 +1.8
575,318 - MPMX19_05842 0.44 +0.4
575,318 - MPMX19_05842 0.44 -1.6
575,318 - MPMX19_05842 0.44 -0.9
575,318 - MPMX19_05842 0.44 -0.3
575,318 - MPMX19_05842 0.44 -1.5
575,318 - MPMX19_05842 0.44 -1.3
575,318 - MPMX19_05842 0.44 +0.1
575,318 - MPMX19_05842 0.44 -1.1
575,318 - MPMX19_05842 0.44 -0.1
575,318 - MPMX19_05842 0.44 -0.6
575,318 - MPMX19_05842 0.44 +0.0
575,318 - MPMX19_05842 0.44 -0.3
575,318 - MPMX19_05842 0.44 -0.5
575,318 - MPMX19_05842 0.44 -1.5
575,318 - MPMX19_05842 0.44 +1.0
575,318 - MPMX19_05842 0.44 -1.9
575,318 - MPMX19_05842 0.44 -0.5
575,318 - MPMX19_05842 0.44 -2.0
575,318 - MPMX19_05842 0.44 -1.5
575,323 + MPMX19_05842 0.44 +0.0
575,323 + MPMX19_05842 0.44 +0.5
575,323 + MPMX19_05842 0.44 -1.5
575,323 + MPMX19_05842 0.44 +0.7
575,323 + MPMX19_05842 0.44 -0.2
575,323 + MPMX19_05842 0.44 -0.6
575,324 - MPMX19_05842 0.44 +1.6
575,324 - MPMX19_05842 0.44 -1.4
575,324 - MPMX19_05842 0.44 -0.6
575,324 - MPMX19_05842 0.44 -0.1
575,324 - MPMX19_05842 0.44 -0.6
575,324 - MPMX19_05842 0.44 +0.8
575,324 - MPMX19_05842 0.44 -1.3
575,656 + MPMX19_05842 0.70 -0.1
575,656 + MPMX19_05842 0.70 +0.2
575,656 + MPMX19_05842 0.70 -0.8
575,656 + MPMX19_05842 0.70 -0.4
575,657 - MPMX19_05842 0.70 -0.6
575,657 - MPMX19_05842 0.70 -1.6
575,657 - MPMX19_05842 0.70 -0.5
575,657 - MPMX19_05842 0.70 -2.6
575,657 - MPMX19_05842 0.70 +1.2
575,707 + MPMX19_05842 0.74 -0.2
575,707 + MPMX19_05842 0.74 -1.8
575,707 + MPMX19_05842 0.74 +0.5
575,707 + MPMX19_05842 0.74 -0.2
575,707 + MPMX19_05842 0.74 +0.4
575,707 + MPMX19_05842 0.74 -0.8
575,707 + MPMX19_05842 0.74 -1.3
575,707 + MPMX19_05842 0.74 -2.0
575,707 + MPMX19_05842 0.74 +0.4
575,707 + MPMX19_05842 0.74 +1.8
575,707 + MPMX19_05842 0.74 -0.8
575,708 - MPMX19_05842 0.74 +0.2
575,708 - MPMX19_05842 0.74 -1.1
575,708 - MPMX19_05842 0.74 -0.2
575,708 - MPMX19_05842 0.74 -2.1
575,708 - MPMX19_05842 0.74 -0.8
575,708 - MPMX19_05842 0.74 -0.4
575,708 - MPMX19_05842 0.74 -1.4
575,708 - MPMX19_05842 0.74 -0.7
575,708 - MPMX19_05842 0.74 -0.7
575,839 + MPMX19_05842 0.84 +0.0
575,839 + MPMX19_05842 0.84 -1.2
575,839 + MPMX19_05842 0.84 -1.6
575,840 - MPMX19_05842 0.84 +1.2
575,840 - MPMX19_05842 0.84 -0.2
575,840 - MPMX19_05842 0.84 +0.2
575,840 - MPMX19_05842 0.84 -0.7
575,896 + MPMX19_05842 0.89 +0.5
575,896 + MPMX19_05842 0.89 -1.5
575,897 - MPMX19_05842 0.89 +0.0
575,897 - MPMX19_05842 0.89 -1.2
575,897 - MPMX19_05842 0.89 -0.1
575,897 - MPMX19_05842 0.89 +0.5
576,124 + +0.2
576,124 + -3.0
576,125 - +0.2
576,125 - -0.6
576,125 - -0.4
576,133 - -1.2
576,133 - +0.1
576,166 - -1.6
576,202 + +0.0
576,202 + +1.1
576,202 + -0.3
576,202 + +0.4
576,202 + +0.1
576,202 + -0.3
576,202 + -0.2
576,202 + -0.2
576,202 + -2.3
576,202 + +0.4
576,202 + -0.5
576,202 + -1.2
576,202 + -0.4
576,202 + -0.5
576,203 - +0.0
576,203 - -0.2
576,203 - -0.9
576,203 - -0.9
576,203 - +0.8
576,203 - -0.8
576,203 - +0.7
576,203 - -0.3
576,243 + +0.6
576,243 + +0.7
576,243 + +0.5
576,243 + +1.2
576,243 + -0.5
576,243 + -0.9
576,243 + +0.4
576,244 - -0.3
576,244 - -1.0
576,244 - -0.1
576,244 - -0.7
576,952 + -0.1
576,952 + -0.8
576,952 + +0.9
576,952 + -0.8
576,953 - -1.4
576,953 - -1.0
576,953 - -0.7
576,953 - -0.8
576,953 - -0.2
577,008 + -2.5
577,008 + +0.1
577,008 + -1.2
577,008 + +0.6
577,008 + -0.9
577,008 + -2.2
577,008 + -1.0
577,008 + -0.9
577,008 + +0.1
577,008 + +0.6
577,008 + +1.1
577,008 + +0.1
577,008 + +0.4
577,008 + -1.4
577,008 + -1.4
577,008 + +0.1
577,008 + -0.1
577,008 + +0.8
577,008 - -1.5
577,009 - -1.3
577,009 - -0.9
577,009 - +0.1
577,009 - -0.7
577,009 - +2.5
577,009 - -3.2
577,009 - +1.3
577,009 - +0.6
577,009 - -1.8
577,009 - -0.6
577,009 - -1.4
577,009 - -0.2
577,009 - -0.2
577,009 - +0.6
577,009 - -1.4
577,009 - -1.3
577,009 - -0.1
577,009 - -0.8
577,009 - +0.2
577,009 - +0.5

Or see this region's nucleotide sequence