Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05838 and MPMX19_05839 are separated by 69 nucleotides MPMX19_05839 and MPMX19_05840 are separated by 161 nucleotides MPMX19_05840 and MPMX19_05841 are separated by 151 nucleotides
MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341
_05838
MPMX19_05839: MPMX19_05839 - Chemoreceptor glutamine deamidase CheD, at 570,411 to 571,061
_05839
MPMX19_05840: MPMX19_05840 - hypothetical protein, at 571,223 to 572,704
_05840
MPMX19_05841: MPMX19_05841 - hypothetical protein, at 572,856 to 574,739
_05841
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.409 kb on + strand at 570.410 kb on - strand at 570.410 kb on - strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.773 kb on - strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.976 kb on + strand, within MPMX19_05839 at 570.977 kb on - strand, within MPMX19_05839 at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.136 kb on - strand at 571.208 kb on + strand at 571.208 kb on + strand at 571.209 kb on - strand at 571.209 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.431 kb on + strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.432 kb on - strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.811 kb on + strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 571.812 kb on - strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.124 kb on + strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.125 kb on - strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.157 kb on + strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.158 kb on - strand, within MPMX19_05840 at 572.220 kb on + strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.221 kb on - strand, within MPMX19_05840 at 572.246 kb on + strand, within MPMX19_05840 at 572.516 kb on - strand, within MPMX19_05840 at 572.516 kb on - strand, within MPMX19_05840 at 572.517 kb on + strand, within MPMX19_05840 at 572.517 kb on + strand, within MPMX19_05840 at 572.518 kb on - strand, within MPMX19_05840 at 572.740 kb on + strand at 572.740 kb on + strand at 572.741 kb on - strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.745 kb on + strand at 572.746 kb on - strand at 572.746 kb on - strand at 572.746 kb on - strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.785 kb on + strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 572.786 kb on - strand at 573.223 kb on - strand, within MPMX19_05841 at 573.225 kb on + strand, within MPMX19_05841 at 573.226 kb on - strand, within MPMX19_05841 at 573.226 kb on - strand, within MPMX19_05841 at 573.237 kb on + strand, within MPMX19_05841 at 573.238 kb on - strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.330 kb on + strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.331 kb on - strand, within MPMX19_05841 at 573.651 kb on + strand, within MPMX19_05841 at 573.652 kb on - strand, within MPMX19_05841 at 573.652 kb on - strand, within MPMX19_05841
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 570,409 + -1.8 570,410 - -0.3 570,410 - -0.6 570,463 + -1.5 570,463 + +0.2 570,463 + +0.2 570,463 + -0.4 570,463 + -0.9 570,463 + +0.2 570,463 + -0.5 570,463 + -0.5 570,464 - -1.8 570,464 - +1.2 570,464 - -1.0 570,464 - -1.5 570,464 - -1.9 570,464 - +0.2 570,464 - +0.2 570,464 - -0.5 570,464 - -0.6 570,464 - -0.4 570,464 - -2.3 570,613 + MPMX19_05839 0.31 +2.5 570,613 + MPMX19_05839 0.31 +1.5 570,613 + MPMX19_05839 0.31 -0.0 570,613 + MPMX19_05839 0.31 +0.4 570,613 + MPMX19_05839 0.31 -0.3 570,613 + MPMX19_05839 0.31 -0.2 570,613 + MPMX19_05839 0.31 -0.1 570,613 + MPMX19_05839 0.31 -0.8 570,613 + MPMX19_05839 0.31 +0.5 570,613 + MPMX19_05839 0.31 +0.6 570,613 + MPMX19_05839 0.31 -0.6 570,614 - MPMX19_05839 0.31 +0.4 570,614 - MPMX19_05839 0.31 -1.2 570,614 - MPMX19_05839 0.31 -0.2 570,614 - MPMX19_05839 0.31 +0.1 570,614 - MPMX19_05839 0.31 +0.6 570,614 - MPMX19_05839 0.31 +0.4 570,773 - MPMX19_05839 0.56 -0.9 570,856 + MPMX19_05839 0.68 +1.5 570,856 + MPMX19_05839 0.68 +0.1 570,856 + MPMX19_05839 0.68 -0.2 570,856 + MPMX19_05839 0.68 -0.6 570,856 + MPMX19_05839 0.68 -0.5 570,857 - MPMX19_05839 0.69 -2.2 570,857 - MPMX19_05839 0.69 -1.8 570,857 - MPMX19_05839 0.69 -0.7 570,857 - MPMX19_05839 0.69 -1.2 570,857 - MPMX19_05839 0.69 -1.2 570,857 - MPMX19_05839 0.69 -0.5 570,976 + MPMX19_05839 0.87 -0.1 570,977 - MPMX19_05839 0.87 +0.6 571,097 + -0.8 571,097 + -0.9 571,097 + +0.1 571,097 + -1.6 571,097 + +0.8 571,097 + +0.4 571,097 + +0.4 571,097 + -1.9 571,097 + +2.4 571,097 + +0.4 571,098 - -0.1 571,098 - +0.1 571,098 - +1.8 571,098 - -1.0 571,098 - +0.2 571,098 - -0.6 571,098 - -1.2 571,098 - +0.2 571,098 - -0.9 571,098 - -0.2 571,098 - +0.0 571,098 - +0.7 571,136 - +0.3 571,208 + -2.5 571,208 + -1.5 571,209 - -1.1 571,209 - +0.0 571,215 + -1.0 571,215 + -0.7 571,215 + -1.0 571,215 + +1.1 571,215 + -1.0 571,215 + +1.8 571,215 + +0.6 571,215 + +0.2 571,215 + -0.5 571,215 + -1.1 571,215 + -1.0 571,215 + +0.9 571,215 + -1.1 571,215 + -0.2 571,215 + +0.1 571,215 + -0.3 571,215 + -0.6 571,215 + +0.5 571,216 - -1.0 571,216 - -1.4 571,216 - -0.2 571,216 - +0.8 571,216 - +0.0 571,216 - -2.0 571,216 - +0.1 571,216 - -0.0 571,216 - +0.7 571,216 - -0.2 571,216 - -1.2 571,216 - -1.0 571,227 + -0.6 571,227 + -0.3 571,227 + +1.4 571,227 + -1.2 571,227 + -0.8 571,227 + +0.8 571,227 + -0.0 571,227 + -0.6 571,227 + -0.7 571,227 + +0.3 571,227 + -1.0 571,227 + -0.4 571,227 + -0.2 571,228 - -0.5 571,228 - -1.2 571,228 - -0.4 571,228 - +0.6 571,431 + MPMX19_05840 0.14 -1.2 571,431 + MPMX19_05840 0.14 -1.2 571,431 + MPMX19_05840 0.14 -0.1 571,431 + MPMX19_05840 0.14 -0.2 571,431 + MPMX19_05840 0.14 -0.2 571,431 + MPMX19_05840 0.14 +0.5 571,431 + MPMX19_05840 0.14 -1.6 571,431 + MPMX19_05840 0.14 -0.6 571,431 + MPMX19_05840 0.14 -0.6 571,431 + MPMX19_05840 0.14 -0.5 571,431 + MPMX19_05840 0.14 -0.6 571,432 - MPMX19_05840 0.14 -1.4 571,432 - MPMX19_05840 0.14 +1.4 571,432 - MPMX19_05840 0.14 +0.4 571,432 - MPMX19_05840 0.14 +0.2 571,432 - MPMX19_05840 0.14 +0.0 571,432 - MPMX19_05840 0.14 +0.1 571,432 - MPMX19_05840 0.14 -0.1 571,811 + MPMX19_05840 0.40 +0.1 571,811 + MPMX19_05840 0.40 -0.3 571,811 + MPMX19_05840 0.40 +0.6 571,811 + MPMX19_05840 0.40 -2.6 571,812 - MPMX19_05840 0.40 -0.3 571,812 - MPMX19_05840 0.40 -0.4 571,812 - MPMX19_05840 0.40 -1.1 571,812 - MPMX19_05840 0.40 -0.1 571,812 - MPMX19_05840 0.40 -1.0 572,124 + MPMX19_05840 0.61 -0.8 572,124 + MPMX19_05840 0.61 -1.7 572,124 + MPMX19_05840 0.61 +0.4 572,124 + MPMX19_05840 0.61 +0.6 572,124 + MPMX19_05840 0.61 +2.4 572,125 - MPMX19_05840 0.61 -1.8 572,125 - MPMX19_05840 0.61 -2.6 572,125 - MPMX19_05840 0.61 +0.0 572,125 - MPMX19_05840 0.61 -0.4 572,125 - MPMX19_05840 0.61 -0.6 572,125 - MPMX19_05840 0.61 -0.6 572,125 - MPMX19_05840 0.61 +0.5 572,125 - MPMX19_05840 0.61 -1.4 572,157 + MPMX19_05840 0.63 -0.8 572,157 + MPMX19_05840 0.63 -0.5 572,157 + MPMX19_05840 0.63 -0.7 572,157 + MPMX19_05840 0.63 -2.1 572,157 + MPMX19_05840 0.63 -0.1 572,157 + MPMX19_05840 0.63 -0.5 572,157 + MPMX19_05840 0.63 -1.4 572,157 + MPMX19_05840 0.63 +0.5 572,157 + MPMX19_05840 0.63 -0.3 572,157 + MPMX19_05840 0.63 -1.4 572,157 + MPMX19_05840 0.63 -1.4 572,158 - MPMX19_05840 0.63 -1.5 572,158 - MPMX19_05840 0.63 -0.8 572,158 - MPMX19_05840 0.63 -1.4 572,158 - MPMX19_05840 0.63 -0.2 572,158 - MPMX19_05840 0.63 -1.1 572,158 - MPMX19_05840 0.63 -1.2 572,158 - MPMX19_05840 0.63 -1.3 572,158 - MPMX19_05840 0.63 +1.0 572,158 - MPMX19_05840 0.63 +0.0 572,158 - MPMX19_05840 0.63 -0.2 572,158 - MPMX19_05840 0.63 -0.4 572,158 - MPMX19_05840 0.63 -0.7 572,220 + MPMX19_05840 0.67 +0.8 572,221 - MPMX19_05840 0.67 -1.1 572,221 - MPMX19_05840 0.67 +0.0 572,221 - MPMX19_05840 0.67 -0.9 572,221 - MPMX19_05840 0.67 -1.5 572,221 - MPMX19_05840 0.67 +0.3 572,221 - MPMX19_05840 0.67 -1.3 572,246 + MPMX19_05840 0.69 +0.2 572,516 - MPMX19_05840 0.87 -0.1 572,516 - MPMX19_05840 0.87 -1.1 572,517 + MPMX19_05840 0.87 -0.3 572,517 + MPMX19_05840 0.87 -0.6 572,518 - MPMX19_05840 0.87 -0.3 572,740 + -0.5 572,740 + -1.2 572,741 - +0.7 572,745 + -0.1 572,745 + -1.3 572,745 + -1.6 572,745 + +0.5 572,746 - -0.2 572,746 - -0.9 572,746 - +0.4 572,785 + -0.7 572,785 + -0.6 572,785 + +1.0 572,785 + -1.8 572,785 + -0.8 572,785 + +0.4 572,785 + +2.4 572,786 - -1.5 572,786 - -1.5 572,786 - +0.4 572,786 - -1.2 572,786 - -1.1 573,223 - MPMX19_05841 0.19 -1.2 573,225 + MPMX19_05841 0.20 +0.2 573,226 - MPMX19_05841 0.20 +0.8 573,226 - MPMX19_05841 0.20 +0.0 573,237 + MPMX19_05841 0.20 +0.5 573,238 - MPMX19_05841 0.20 -0.2 573,330 + MPMX19_05841 0.25 -0.5 573,330 + MPMX19_05841 0.25 -2.2 573,330 + MPMX19_05841 0.25 -0.7 573,331 - MPMX19_05841 0.25 -0.7 573,331 - MPMX19_05841 0.25 +0.2 573,331 - MPMX19_05841 0.25 +1.1 573,331 - MPMX19_05841 0.25 -1.3 573,651 + MPMX19_05841 0.42 -0.9 573,652 - MPMX19_05841 0.42 +0.1 573,652 - MPMX19_05841 0.42 -0.9
Or see this region's nucleotide sequence