Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05836 and MPMX19_05837 are separated by 82 nucleotides MPMX19_05837 and MPMX19_05838 are separated by 112 nucleotides MPMX19_05838 and MPMX19_05839 are separated by 69 nucleotides MPMX19_05839 and MPMX19_05840 are separated by 161 nucleotides
MPMX19_05836: MPMX19_05836 - Alkyl hydroperoxide reductase subunit F, at 567,016 to 568,806
_05836
MPMX19_05837: MPMX19_05837 - hypothetical protein, at 568,889 to 569,257
_05837
MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341
_05838
MPMX19_05839: MPMX19_05839 - Chemoreceptor glutamine deamidase CheD, at 570,411 to 571,061
_05839
MPMX19_05840: MPMX19_05840 - hypothetical protein, at 571,223 to 572,704
_05840
Position (kb) 569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 568.492 kb on + strand, within MPMX19_05836 at 568.492 kb on + strand, within MPMX19_05836 at 568.492 kb on + strand, within MPMX19_05836 at 568.492 kb on + strand, within MPMX19_05836 at 568.492 kb on + strand, within MPMX19_05836 at 568.492 kb on + strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 568.493 kb on - strand, within MPMX19_05836 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.076 kb on + strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.077 kb on - strand, within MPMX19_05837 at 569.079 kb on + strand, within MPMX19_05837 at 569.080 kb on - strand, within MPMX19_05837 at 569.080 kb on - strand, within MPMX19_05837 at 569.080 kb on - strand, within MPMX19_05837 at 569.080 kb on - strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.166 kb on + strand, within MPMX19_05837 at 569.167 kb on - strand, within MPMX19_05837 at 569.167 kb on - strand, within MPMX19_05837 at 569.167 kb on - strand, within MPMX19_05837 at 569.371 kb on + strand at 569.372 kb on - strand at 569.404 kb on + strand at 569.404 kb on + strand at 569.404 kb on + strand at 569.404 kb on + strand at 569.404 kb on + strand at 569.404 kb on + strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.405 kb on - strand at 569.551 kb on + strand, within MPMX19_05838 at 569.551 kb on + strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.552 kb on - strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.782 kb on + strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 569.783 kb on - strand, within MPMX19_05838 at 570.113 kb on - strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.121 kb on + strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.122 kb on - strand, within MPMX19_05838 at 570.409 kb on + strand at 570.410 kb on - strand at 570.410 kb on - strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.463 kb on + strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.464 kb on - strand at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.613 kb on + strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.614 kb on - strand, within MPMX19_05839 at 570.773 kb on - strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.856 kb on + strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.857 kb on - strand, within MPMX19_05839 at 570.976 kb on + strand, within MPMX19_05839 at 570.977 kb on - strand, within MPMX19_05839 at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.097 kb on + strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.098 kb on - strand at 571.136 kb on - strand at 571.208 kb on + strand at 571.208 kb on + strand at 571.209 kb on - strand at 571.209 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.216 kb on - strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.227 kb on + strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand at 571.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 568,492 + MPMX19_05836 0.82 +0.6 568,492 + MPMX19_05836 0.82 -0.4 568,492 + MPMX19_05836 0.82 -0.8 568,492 + MPMX19_05836 0.82 -1.3 568,492 + MPMX19_05836 0.82 -2.1 568,492 + MPMX19_05836 0.82 -1.1 568,493 - MPMX19_05836 0.82 -0.6 568,493 - MPMX19_05836 0.82 -1.2 568,493 - MPMX19_05836 0.82 -1.0 568,493 - MPMX19_05836 0.82 -1.0 568,493 - MPMX19_05836 0.82 -1.3 568,493 - MPMX19_05836 0.82 -1.0 568,493 - MPMX19_05836 0.82 +1.4 568,493 - MPMX19_05836 0.82 +0.8 568,493 - MPMX19_05836 0.82 +1.0 568,493 - MPMX19_05836 0.82 -0.1 568,493 - MPMX19_05836 0.82 -2.8 568,493 - MPMX19_05836 0.82 -0.2 568,493 - MPMX19_05836 0.82 -0.8 569,076 + MPMX19_05837 0.51 -0.5 569,076 + MPMX19_05837 0.51 -1.0 569,076 + MPMX19_05837 0.51 -0.5 569,076 + MPMX19_05837 0.51 +1.0 569,076 + MPMX19_05837 0.51 +0.4 569,076 + MPMX19_05837 0.51 +0.8 569,076 + MPMX19_05837 0.51 -2.0 569,076 + MPMX19_05837 0.51 -2.0 569,076 + MPMX19_05837 0.51 -0.1 569,076 + MPMX19_05837 0.51 +0.9 569,076 + MPMX19_05837 0.51 +0.5 569,076 + MPMX19_05837 0.51 -0.6 569,076 + MPMX19_05837 0.51 -2.1 569,076 + MPMX19_05837 0.51 +0.6 569,076 + MPMX19_05837 0.51 +0.7 569,077 - MPMX19_05837 0.51 +0.4 569,077 - MPMX19_05837 0.51 +0.0 569,077 - MPMX19_05837 0.51 -0.3 569,077 - MPMX19_05837 0.51 -2.1 569,077 - MPMX19_05837 0.51 -1.5 569,077 - MPMX19_05837 0.51 -1.5 569,077 - MPMX19_05837 0.51 +0.3 569,077 - MPMX19_05837 0.51 -0.0 569,077 - MPMX19_05837 0.51 -0.8 569,077 - MPMX19_05837 0.51 -1.1 569,077 - MPMX19_05837 0.51 +1.0 569,077 - MPMX19_05837 0.51 -1.0 569,077 - MPMX19_05837 0.51 -0.6 569,077 - MPMX19_05837 0.51 -2.0 569,077 - MPMX19_05837 0.51 -0.8 569,079 + MPMX19_05837 0.51 +1.0 569,080 - MPMX19_05837 0.52 -1.5 569,080 - MPMX19_05837 0.52 +0.5 569,080 - MPMX19_05837 0.52 +0.2 569,080 - MPMX19_05837 0.52 -0.6 569,166 + MPMX19_05837 0.75 +0.2 569,166 + MPMX19_05837 0.75 -0.5 569,166 + MPMX19_05837 0.75 -0.8 569,166 + MPMX19_05837 0.75 -0.7 569,166 + MPMX19_05837 0.75 +1.8 569,166 + MPMX19_05837 0.75 -1.4 569,167 - MPMX19_05837 0.75 +0.2 569,167 - MPMX19_05837 0.75 -0.1 569,167 - MPMX19_05837 0.75 -0.5 569,371 + -1.6 569,372 - -0.3 569,404 + -1.5 569,404 + -0.6 569,404 + -1.8 569,404 + -0.1 569,404 + -0.0 569,404 + -1.1 569,405 - -1.6 569,405 - +1.0 569,405 - -1.6 569,405 - -0.6 569,405 - +1.1 569,405 - -0.7 569,405 - -1.7 569,405 - +0.2 569,405 - -1.1 569,551 + MPMX19_05838 0.19 +0.8 569,551 + MPMX19_05838 0.19 -2.0 569,552 - MPMX19_05838 0.19 +0.1 569,552 - MPMX19_05838 0.19 +0.1 569,552 - MPMX19_05838 0.19 +0.5 569,552 - MPMX19_05838 0.19 +0.1 569,782 + MPMX19_05838 0.42 +0.1 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 +1.0 569,782 + MPMX19_05838 0.42 +0.6 569,782 + MPMX19_05838 0.42 -1.0 569,782 + MPMX19_05838 0.42 -0.4 569,782 + MPMX19_05838 0.42 +0.6 569,782 + MPMX19_05838 0.42 +0.3 569,782 + MPMX19_05838 0.42 -0.5 569,782 + MPMX19_05838 0.42 -0.4 569,782 + MPMX19_05838 0.42 -2.4 569,782 + MPMX19_05838 0.42 +0.8 569,783 - MPMX19_05838 0.42 -0.8 569,783 - MPMX19_05838 0.42 -1.1 569,783 - MPMX19_05838 0.42 +0.1 569,783 - MPMX19_05838 0.42 +1.0 570,113 - MPMX19_05838 0.76 -0.8 570,121 + MPMX19_05838 0.77 -0.9 570,121 + MPMX19_05838 0.77 -1.5 570,122 - MPMX19_05838 0.77 -1.8 570,122 - MPMX19_05838 0.77 +0.5 570,122 - MPMX19_05838 0.77 +1.2 570,122 - MPMX19_05838 0.77 +1.4 570,409 + -1.8 570,410 - -0.3 570,410 - -0.6 570,463 + -1.5 570,463 + +0.2 570,463 + +0.2 570,463 + -0.4 570,463 + -0.9 570,463 + +0.2 570,463 + -0.5 570,463 + -0.5 570,464 - -1.8 570,464 - +1.2 570,464 - -1.0 570,464 - -1.5 570,464 - -1.9 570,464 - +0.2 570,464 - +0.2 570,464 - -0.5 570,464 - -0.6 570,464 - -0.4 570,464 - -2.3 570,613 + MPMX19_05839 0.31 +2.5 570,613 + MPMX19_05839 0.31 +1.5 570,613 + MPMX19_05839 0.31 -0.0 570,613 + MPMX19_05839 0.31 +0.4 570,613 + MPMX19_05839 0.31 -0.3 570,613 + MPMX19_05839 0.31 -0.2 570,613 + MPMX19_05839 0.31 -0.1 570,613 + MPMX19_05839 0.31 -0.8 570,613 + MPMX19_05839 0.31 +0.5 570,613 + MPMX19_05839 0.31 +0.6 570,613 + MPMX19_05839 0.31 -0.6 570,614 - MPMX19_05839 0.31 +0.4 570,614 - MPMX19_05839 0.31 -1.2 570,614 - MPMX19_05839 0.31 -0.2 570,614 - MPMX19_05839 0.31 +0.1 570,614 - MPMX19_05839 0.31 +0.6 570,614 - MPMX19_05839 0.31 +0.4 570,773 - MPMX19_05839 0.56 -0.9 570,856 + MPMX19_05839 0.68 +1.5 570,856 + MPMX19_05839 0.68 +0.1 570,856 + MPMX19_05839 0.68 -0.2 570,856 + MPMX19_05839 0.68 -0.6 570,856 + MPMX19_05839 0.68 -0.5 570,857 - MPMX19_05839 0.69 -2.2 570,857 - MPMX19_05839 0.69 -1.8 570,857 - MPMX19_05839 0.69 -0.7 570,857 - MPMX19_05839 0.69 -1.2 570,857 - MPMX19_05839 0.69 -1.2 570,857 - MPMX19_05839 0.69 -0.5 570,976 + MPMX19_05839 0.87 -0.1 570,977 - MPMX19_05839 0.87 +0.6 571,097 + -0.8 571,097 + -0.9 571,097 + +0.1 571,097 + -1.6 571,097 + +0.8 571,097 + +0.4 571,097 + +0.4 571,097 + -1.9 571,097 + +2.4 571,097 + +0.4 571,098 - -0.1 571,098 - +0.1 571,098 - +1.8 571,098 - -1.0 571,098 - +0.2 571,098 - -0.6 571,098 - -1.2 571,098 - +0.2 571,098 - -0.9 571,098 - -0.2 571,098 - +0.0 571,098 - +0.7 571,136 - +0.3 571,208 + -2.5 571,208 + -1.5 571,209 - -1.1 571,209 - +0.0 571,215 + -1.0 571,215 + -0.7 571,215 + -1.0 571,215 + +1.1 571,215 + -1.0 571,215 + +1.8 571,215 + +0.6 571,215 + +0.2 571,215 + -0.5 571,215 + -1.1 571,215 + -1.0 571,215 + +0.9 571,215 + -1.1 571,215 + -0.2 571,215 + +0.1 571,215 + -0.3 571,215 + -0.6 571,215 + +0.5 571,216 - -1.0 571,216 - -1.4 571,216 - -0.2 571,216 - +0.8 571,216 - +0.0 571,216 - -2.0 571,216 - +0.1 571,216 - -0.0 571,216 - +0.7 571,216 - -0.2 571,216 - -1.2 571,216 - -1.0 571,227 + -0.6 571,227 + -0.3 571,227 + +1.4 571,227 + -1.2 571,227 + -0.8 571,227 + +0.8 571,227 + -0.0 571,227 + -0.6 571,227 + -0.7 571,227 + +0.3 571,227 + -1.0 571,227 + -0.4 571,227 + -0.2 571,228 - -0.5 571,228 - -1.2 571,228 - -0.4 571,228 - +0.6
Or see this region's nucleotide sequence