Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05830 and MPMX19_05831 are separated by 576 nucleotides MPMX19_05831 and MPMX19_05832 are separated by 252 nucleotides
MPMX19_05830: MPMX19_05830 - Isocitrate lyase, at 559,634 to 560,911
_05830
MPMX19_05831: MPMX19_05831 - Protein/nucleic acid deglycase 2, at 561,488 to 562,051
_05831
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.822 kb on + strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 561.066 kb on - strand at 561.095 kb on + strand at 561.095 kb on + strand at 561.096 kb on - strand at 561.127 kb on - strand at 561.127 kb on - strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.302 kb on - strand at 561.302 kb on - strand at 561.302 kb on - strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.458 kb on - strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.577 kb on + strand, within MPMX19_05831 at 561.577 kb on + strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.890 kb on + strand, within MPMX19_05831 at 562.128 kb on + strand at 562.128 kb on + strand at 562.128 kb on + strand at 562.209 kb on + strand at 562.209 kb on + strand at 562.228 kb on + strand at 562.231 kb on + strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.624 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.689 kb on - strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 560,555 + MPMX19_05830 0.72 -1.6 560,555 + MPMX19_05830 0.72 -1.4 560,555 + MPMX19_05830 0.72 -1.9 560,555 + MPMX19_05830 0.72 -1.2 560,556 - MPMX19_05830 0.72 +0.7 560,556 - MPMX19_05830 0.72 -1.5 560,556 - MPMX19_05830 0.72 +0.4 560,556 - MPMX19_05830 0.72 -0.5 560,556 - MPMX19_05830 0.72 -1.4 560,556 - MPMX19_05830 0.72 -1.2 560,615 + MPMX19_05830 0.77 -0.9 560,615 + MPMX19_05830 0.77 -0.2 560,615 + MPMX19_05830 0.77 -1.5 560,615 + MPMX19_05830 0.77 +0.0 560,615 + MPMX19_05830 0.77 -0.8 560,615 + MPMX19_05830 0.77 -1.7 560,616 - MPMX19_05830 0.77 -0.4 560,616 - MPMX19_05830 0.77 -1.5 560,616 - MPMX19_05830 0.77 -0.4 560,616 - MPMX19_05830 0.77 -1.3 560,616 - MPMX19_05830 0.77 -2.0 560,616 - MPMX19_05830 0.77 -1.3 560,616 - MPMX19_05830 0.77 -0.6 560,642 + MPMX19_05830 0.79 -1.0 560,642 + MPMX19_05830 0.79 -0.6 560,642 + MPMX19_05830 0.79 -1.4 560,642 + MPMX19_05830 0.79 -0.8 560,642 + MPMX19_05830 0.79 -0.5 560,642 + MPMX19_05830 0.79 -0.5 560,642 + MPMX19_05830 0.79 -2.9 560,643 - MPMX19_05830 0.79 -0.9 560,643 - MPMX19_05830 0.79 -1.8 560,643 - MPMX19_05830 0.79 -0.4 560,643 - MPMX19_05830 0.79 -0.7 560,643 - MPMX19_05830 0.79 -0.4 560,643 - MPMX19_05830 0.79 -0.6 560,687 + MPMX19_05830 0.82 -1.0 560,687 + MPMX19_05830 0.82 -0.7 560,687 + MPMX19_05830 0.82 -0.6 560,687 + MPMX19_05830 0.82 +1.0 560,687 + MPMX19_05830 0.82 -1.4 560,688 - MPMX19_05830 0.82 -0.3 560,688 - MPMX19_05830 0.82 -1.0 560,688 - MPMX19_05830 0.82 -0.1 560,688 - MPMX19_05830 0.82 -0.6 560,688 - MPMX19_05830 0.82 -1.4 560,714 + MPMX19_05830 0.85 +0.0 560,714 + MPMX19_05830 0.85 +0.2 560,714 + MPMX19_05830 0.85 -1.1 560,714 + MPMX19_05830 0.85 -1.4 560,714 + MPMX19_05830 0.85 +1.5 560,714 + MPMX19_05830 0.85 +0.0 560,714 + MPMX19_05830 0.85 +0.1 560,715 - MPMX19_05830 0.85 -0.2 560,715 - MPMX19_05830 0.85 -0.3 560,715 - MPMX19_05830 0.85 -1.0 560,715 - MPMX19_05830 0.85 -0.6 560,738 + MPMX19_05830 0.86 -1.0 560,738 + MPMX19_05830 0.86 -0.2 560,738 + MPMX19_05830 0.86 -2.6 560,738 + MPMX19_05830 0.86 +0.2 560,738 + MPMX19_05830 0.86 -0.6 560,738 + MPMX19_05830 0.86 -0.0 560,739 - MPMX19_05830 0.86 -0.2 560,739 - MPMX19_05830 0.86 -0.1 560,739 - MPMX19_05830 0.86 -0.6 560,783 + MPMX19_05830 0.90 -0.6 560,783 + MPMX19_05830 0.90 +0.0 560,783 + MPMX19_05830 0.90 -0.4 560,783 + MPMX19_05830 0.90 -1.8 560,783 + MPMX19_05830 0.90 +0.5 560,783 + MPMX19_05830 0.90 -2.9 560,784 - +0.2 560,784 - +0.1 560,784 - -0.2 560,784 - -0.8 560,784 - +0.2 560,784 - -0.6 560,784 - +0.4 560,784 - -0.3 560,784 - -1.4 560,784 - -0.4 560,784 - +0.7 560,784 - -0.2 560,784 - -0.9 560,822 + -1.5 560,823 - +0.0 560,823 - -0.8 560,823 - -0.0 560,823 - +0.4 560,876 + -0.2 560,876 + +0.4 560,876 + -1.7 560,876 + -0.4 560,876 + -0.4 560,876 + -0.4 560,876 + -0.7 560,877 - -1.8 560,877 - -1.5 560,877 - -0.2 560,877 - -1.1 560,877 - +0.2 560,877 - -1.0 560,877 - -1.0 560,877 - -1.0 560,877 - +0.5 560,877 - -0.8 560,877 - +2.4 560,877 - -0.5 560,877 - -1.2 560,877 - -1.4 560,877 - +0.4 561,066 - -0.6 561,095 + -2.0 561,095 + +0.2 561,096 - -1.3 561,127 - -0.5 561,127 - +0.1 561,164 + +0.4 561,164 + -1.0 561,164 + -1.8 561,164 + +0.4 561,165 - +0.4 561,165 - +0.6 561,165 - -0.6 561,165 - -0.6 561,265 + -1.6 561,265 + -0.1 561,265 + -1.5 561,265 + +1.2 561,265 + +0.2 561,265 + -1.4 561,265 + -1.0 561,266 - +0.5 561,266 - +0.1 561,266 - -1.5 561,266 - -1.9 561,301 + +0.0 561,301 + +0.6 561,301 + -1.2 561,301 + -1.9 561,301 + -0.8 561,301 + -0.6 561,301 + -0.8 561,301 + +1.0 561,302 - -0.1 561,302 - -1.2 561,302 - +0.7 561,457 + -0.5 561,457 + -0.2 561,457 + -1.2 561,457 + -1.5 561,457 + +1.3 561,457 + -0.3 561,458 - -0.6 561,487 + +0.8 561,487 + -1.8 561,487 + -0.8 561,488 - +0.8 561,488 - +1.8 561,488 - -0.4 561,488 - -2.6 561,488 - -1.8 561,488 - -0.8 561,488 - -0.1 561,577 + MPMX19_05831 0.16 +0.8 561,577 + MPMX19_05831 0.16 +0.4 561,578 - MPMX19_05831 0.16 -0.2 561,578 - MPMX19_05831 0.16 -0.9 561,659 + MPMX19_05831 0.30 -0.4 561,659 + MPMX19_05831 0.30 +0.0 561,659 + MPMX19_05831 0.30 -1.5 561,659 + MPMX19_05831 0.30 -0.6 561,659 + MPMX19_05831 0.30 -1.2 561,659 + MPMX19_05831 0.30 +0.2 561,659 + MPMX19_05831 0.30 -1.6 561,659 + MPMX19_05831 0.30 -1.4 561,660 - MPMX19_05831 0.30 +0.8 561,660 - MPMX19_05831 0.30 -1.4 561,660 - MPMX19_05831 0.30 -1.2 561,890 + MPMX19_05831 0.71 -0.9 562,128 + -0.8 562,128 + +0.1 562,128 + +1.4 562,209 + -0.8 562,209 + -0.8 562,228 + -0.3 562,231 + -2.1 562,232 - -1.4 562,232 - -1.0 562,232 - -0.8 562,249 - -1.6 562,249 - -0.2 562,249 - -1.0 562,529 + MPMX19_05832 0.13 +0.0 562,529 + MPMX19_05832 0.13 -2.1 562,529 + MPMX19_05832 0.13 -1.5 562,529 + MPMX19_05832 0.13 -0.4 562,530 - MPMX19_05832 0.13 -1.0 562,530 - MPMX19_05832 0.13 -2.0 562,530 - MPMX19_05832 0.13 -1.1 562,624 + MPMX19_05832 0.19 -0.9 562,688 + MPMX19_05832 0.23 -0.0 562,688 + MPMX19_05832 0.23 -2.3 562,688 + MPMX19_05832 0.23 -0.2 562,689 - MPMX19_05832 0.23 -1.4 562,868 + MPMX19_05832 0.33 -0.5 562,868 + MPMX19_05832 0.33 +0.0 562,868 + MPMX19_05832 0.33 -0.7 562,868 + MPMX19_05832 0.33 -1.2 562,868 + MPMX19_05832 0.33 -1.0 562,869 - MPMX19_05832 0.33 -1.2 562,869 - MPMX19_05832 0.33 -0.4 562,869 - MPMX19_05832 0.33 -0.8 562,869 - MPMX19_05832 0.33 +0.8 562,869 - MPMX19_05832 0.33 -0.2
Or see this region's nucleotide sequence