Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05828

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05827 and MPMX19_05828 are separated by 235 nucleotidesMPMX19_05828 and MPMX19_05829 are separated by 237 nucleotides MPMX19_05827: MPMX19_05827 - hypothetical protein, at 554,847 to 556,628 _05827 MPMX19_05828: MPMX19_05828 - Ferredoxin--NADP reductase, at 556,864 to 557,637 _05828 MPMX19_05829: MPMX19_05829 - HTH-type transcriptional regulator PrpR, at 557,875 to 559,326 _05829 Position (kb) 556 557 558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 555.988 kb on + strand, within MPMX19_05827at 555.988 kb on + strand, within MPMX19_05827at 555.988 kb on + strand, within MPMX19_05827at 555.989 kb on - strand, within MPMX19_05827at 556.002 kb on - strand, within MPMX19_05827at 556.045 kb on + strand, within MPMX19_05827at 556.045 kb on + strand, within MPMX19_05827at 556.046 kb on - strand, within MPMX19_05827at 556.046 kb on - strand, within MPMX19_05827at 556.069 kb on + strand, within MPMX19_05827at 556.069 kb on + strand, within MPMX19_05827at 556.070 kb on - strand, within MPMX19_05827at 556.070 kb on - strand, within MPMX19_05827at 556.096 kb on + strand, within MPMX19_05827at 556.097 kb on - strand, within MPMX19_05827at 556.097 kb on - strand, within MPMX19_05827at 556.097 kb on - strand, within MPMX19_05827at 556.126 kb on + strand, within MPMX19_05827at 556.126 kb on + strand, within MPMX19_05827at 556.126 kb on + strand, within MPMX19_05827at 556.127 kb on - strand, within MPMX19_05827at 556.127 kb on - strand, within MPMX19_05827at 556.169 kb on - strand, within MPMX19_05827at 556.169 kb on - strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.390 kb on + strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.391 kb on - strand, within MPMX19_05827at 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.641 kb on + strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.642 kb on - strandat 556.702 kb on + strandat 556.702 kb on + strandat 556.702 kb on + strandat 556.703 kb on - strandat 556.703 kb on - strandat 556.796 kb on + strandat 556.796 kb on + strandat 556.796 kb on + strandat 556.797 kb on - strandat 556.797 kb on - strandat 556.819 kb on - strandat 556.819 kb on - strandat 556.819 kb on - strandat 556.819 kb on - strandat 557.688 kb on - strandat 557.688 kb on - strandat 557.688 kb on - strandat 557.767 kb on - strandat 557.767 kb on - strandat 557.767 kb on - strandat 557.767 kb on - strandat 557.767 kb on - strandat 557.797 kb on + strandat 557.798 kb on - strandat 557.876 kb on + strandat 557.876 kb on + strandat 557.877 kb on - strandat 557.903 kb on + strandat 557.903 kb on + strandat 557.903 kb on + strandat 557.903 kb on + strandat 557.903 kb on + strandat 557.903 kb on + strandat 557.904 kb on - strandat 557.904 kb on - strandat 557.937 kb on + strandat 557.937 kb on + strandat 557.937 kb on + strandat 557.937 kb on + strandat 557.938 kb on - strandat 557.938 kb on - strandat 557.938 kb on - strandat 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.056 kb on + strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.057 kb on - strand, within MPMX19_05829at 558.167 kb on + strand, within MPMX19_05829at 558.167 kb on + strand, within MPMX19_05829at 558.167 kb on + strand, within MPMX19_05829at 558.168 kb on - strand, within MPMX19_05829at 558.168 kb on - strand, within MPMX19_05829at 558.168 kb on - strand, within MPMX19_05829at 558.168 kb on - strand, within MPMX19_05829at 558.233 kb on + strand, within MPMX19_05829at 558.233 kb on + strand, within MPMX19_05829at 558.233 kb on + strand, within MPMX19_05829at 558.233 kb on + strand, within MPMX19_05829at 558.233 kb on + strand, within MPMX19_05829at 558.234 kb on - strand, within MPMX19_05829at 558.234 kb on - strand, within MPMX19_05829at 558.437 kb on + strand, within MPMX19_05829at 558.437 kb on + strand, within MPMX19_05829at 558.437 kb on + strand, within MPMX19_05829at 558.438 kb on - strand, within MPMX19_05829at 558.438 kb on - strand, within MPMX19_05829at 558.473 kb on + strand, within MPMX19_05829at 558.473 kb on + strand, within MPMX19_05829at 558.474 kb on - strand, within MPMX19_05829at 558.474 kb on - strand, within MPMX19_05829at 558.474 kb on - strand, within MPMX19_05829at 558.474 kb on - strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.500 kb on + strand, within MPMX19_05829at 558.501 kb on - strand, within MPMX19_05829at 558.501 kb on - strand, within MPMX19_05829at 558.501 kb on - strand, within MPMX19_05829at 558.501 kb on - strand, within MPMX19_05829at 558.501 kb on - strand, within MPMX19_05829

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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555,988 + MPMX19_05827 0.64 +0.5
555,988 + MPMX19_05827 0.64 -1.0
555,988 + MPMX19_05827 0.64 +1.4
555,989 - MPMX19_05827 0.64 -0.6
556,002 - MPMX19_05827 0.65 -1.8
556,045 + MPMX19_05827 0.67 -2.9
556,045 + MPMX19_05827 0.67 -1.9
556,046 - MPMX19_05827 0.67 +0.1
556,046 - MPMX19_05827 0.67 -1.9
556,069 + MPMX19_05827 0.69 -0.1
556,069 + MPMX19_05827 0.69 -0.2
556,070 - MPMX19_05827 0.69 -1.8
556,070 - MPMX19_05827 0.69 -0.2
556,096 + MPMX19_05827 0.70 +0.5
556,097 - MPMX19_05827 0.70 -1.2
556,097 - MPMX19_05827 0.70 +0.3
556,097 - MPMX19_05827 0.70 +0.4
556,126 + MPMX19_05827 0.72 +1.0
556,126 + MPMX19_05827 0.72 -1.4
556,126 + MPMX19_05827 0.72 -1.6
556,127 - MPMX19_05827 0.72 +0.4
556,127 - MPMX19_05827 0.72 +0.4
556,169 - MPMX19_05827 0.74 +0.1
556,169 - MPMX19_05827 0.74 -0.1
556,390 + MPMX19_05827 0.87 -0.4
556,390 + MPMX19_05827 0.87 -1.8
556,390 + MPMX19_05827 0.87 -1.1
556,390 + MPMX19_05827 0.87 +0.0
556,390 + MPMX19_05827 0.87 +2.0
556,390 + MPMX19_05827 0.87 -0.1
556,390 + MPMX19_05827 0.87 +0.7
556,390 + MPMX19_05827 0.87 +1.5
556,390 + MPMX19_05827 0.87 -0.9
556,390 + MPMX19_05827 0.87 +0.4
556,390 + MPMX19_05827 0.87 -1.5
556,390 + MPMX19_05827 0.87 -0.8
556,390 + MPMX19_05827 0.87 -0.5
556,390 + MPMX19_05827 0.87 -1.9
556,390 + MPMX19_05827 0.87 +1.0
556,390 + MPMX19_05827 0.87 +0.8
556,390 + MPMX19_05827 0.87 -0.9
556,390 + MPMX19_05827 0.87 -1.3
556,390 + MPMX19_05827 0.87 +0.1
556,390 + MPMX19_05827 0.87 +0.6
556,390 + MPMX19_05827 0.87 -0.1
556,390 + MPMX19_05827 0.87 -0.7
556,390 + MPMX19_05827 0.87 -1.2
556,390 + MPMX19_05827 0.87 +0.6
556,391 - MPMX19_05827 0.87 -1.5
556,391 - MPMX19_05827 0.87 -0.8
556,391 - MPMX19_05827 0.87 +0.5
556,391 - MPMX19_05827 0.87 +0.6
556,391 - MPMX19_05827 0.87 -0.6
556,391 - MPMX19_05827 0.87 +1.5
556,391 - MPMX19_05827 0.87 -1.0
556,391 - MPMX19_05827 0.87 -0.4
556,391 - MPMX19_05827 0.87 -1.6
556,391 - MPMX19_05827 0.87 +0.4
556,391 - MPMX19_05827 0.87 +0.7
556,391 - MPMX19_05827 0.87 -1.4
556,391 - MPMX19_05827 0.87 -0.1
556,391 - MPMX19_05827 0.87 +0.7
556,391 - MPMX19_05827 0.87 -0.8
556,391 - MPMX19_05827 0.87 +0.6
556,391 - MPMX19_05827 0.87 -1.6
556,641 + -1.2
556,641 + +0.6
556,641 + -0.8
556,641 + -0.8
556,641 + -1.5
556,641 + -1.2
556,641 + -2.2
556,641 + +1.7
556,641 + -1.4
556,641 + -1.4
556,642 - +0.5
556,642 - -1.0
556,642 - -0.3
556,642 - +0.1
556,642 - +1.2
556,642 - -2.0
556,642 - -2.2
556,642 - -0.8
556,642 - -1.6
556,642 - -0.3
556,642 - -0.8
556,702 + -0.4
556,702 + -1.1
556,702 + -1.0
556,703 - -0.8
556,703 - +0.0
556,796 + -0.3
556,796 + -0.4
556,796 + -1.0
556,797 - -0.1
556,797 - -0.8
556,819 - -1.4
556,819 - +0.1
556,819 - -0.5
556,819 - -1.4
557,688 - -0.8
557,688 - -1.4
557,688 - +1.2
557,767 - -0.6
557,767 - +0.8
557,767 - +0.7
557,767 - -0.8
557,767 - +0.4
557,797 + +0.8
557,798 - -0.9
557,876 + -0.8
557,876 + -0.7
557,877 - +1.0
557,903 + +0.2
557,903 + -0.8
557,903 + +0.2
557,903 + +1.1
557,903 + -2.0
557,903 + -0.4
557,904 - +0.6
557,904 - -1.9
557,937 + +0.3
557,937 + -0.4
557,937 + -0.3
557,937 + -2.7
557,938 - -0.6
557,938 - -1.0
557,938 - +2.3
558,056 + MPMX19_05829 0.12 +1.2
558,056 + MPMX19_05829 0.12 -0.8
558,056 + MPMX19_05829 0.12 +0.2
558,056 + MPMX19_05829 0.12 +0.4
558,056 + MPMX19_05829 0.12 +1.1
558,056 + MPMX19_05829 0.12 +0.9
558,056 + MPMX19_05829 0.12 +0.0
558,056 + MPMX19_05829 0.12 -1.3
558,057 - MPMX19_05829 0.13 +0.8
558,057 - MPMX19_05829 0.13 -0.3
558,057 - MPMX19_05829 0.13 -1.2
558,057 - MPMX19_05829 0.13 -1.5
558,057 - MPMX19_05829 0.13 -0.5
558,057 - MPMX19_05829 0.13 +0.0
558,057 - MPMX19_05829 0.13 +0.5
558,057 - MPMX19_05829 0.13 -0.1
558,057 - MPMX19_05829 0.13 -0.1
558,057 - MPMX19_05829 0.13 +0.8
558,057 - MPMX19_05829 0.13 -2.1
558,057 - MPMX19_05829 0.13 -1.5
558,057 - MPMX19_05829 0.13 -0.9
558,057 - MPMX19_05829 0.13 -0.2
558,057 - MPMX19_05829 0.13 -0.4
558,057 - MPMX19_05829 0.13 +0.8
558,167 + MPMX19_05829 0.20 +0.0
558,167 + MPMX19_05829 0.20 -0.5
558,167 + MPMX19_05829 0.20 -0.1
558,168 - MPMX19_05829 0.20 -0.1
558,168 - MPMX19_05829 0.20 -0.4
558,168 - MPMX19_05829 0.20 -1.4
558,168 - MPMX19_05829 0.20 -0.2
558,233 + MPMX19_05829 0.25 -0.2
558,233 + MPMX19_05829 0.25 +0.8
558,233 + MPMX19_05829 0.25 -1.4
558,233 + MPMX19_05829 0.25 -1.0
558,233 + MPMX19_05829 0.25 -0.1
558,234 - MPMX19_05829 0.25 -0.5
558,234 - MPMX19_05829 0.25 +0.4
558,437 + MPMX19_05829 0.39 +0.1
558,437 + MPMX19_05829 0.39 +0.1
558,437 + MPMX19_05829 0.39 -0.9
558,438 - MPMX19_05829 0.39 +0.1
558,438 - MPMX19_05829 0.39 -1.0
558,473 + MPMX19_05829 0.41 +0.2
558,473 + MPMX19_05829 0.41 +0.4
558,474 - MPMX19_05829 0.41 +0.1
558,474 - MPMX19_05829 0.41 -0.5
558,474 - MPMX19_05829 0.41 +0.0
558,474 - MPMX19_05829 0.41 -0.8
558,500 + MPMX19_05829 0.43 -0.9
558,500 + MPMX19_05829 0.43 -0.3
558,500 + MPMX19_05829 0.43 +1.3
558,500 + MPMX19_05829 0.43 -1.5
558,500 + MPMX19_05829 0.43 -0.6
558,500 + MPMX19_05829 0.43 -0.5
558,500 + MPMX19_05829 0.43 +0.6
558,500 + MPMX19_05829 0.43 -0.1
558,501 - MPMX19_05829 0.43 +0.8
558,501 - MPMX19_05829 0.43 +1.0
558,501 - MPMX19_05829 0.43 -0.7
558,501 - MPMX19_05829 0.43 +0.1
558,501 - MPMX19_05829 0.43 -0.4

Or see this region's nucleotide sequence