Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05825

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05824 and MPMX19_05825 are separated by 13 nucleotidesMPMX19_05825 and MPMX19_05826 are separated by 269 nucleotidesMPMX19_05826 and MPMX19_05827 are separated by 6 nucleotides MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403 _05824 MPMX19_05825: MPMX19_05825 - hypothetical protein, at 553,417 to 554,061 _05825 MPMX19_05826: MPMX19_05826 - hypothetical protein, at 554,331 to 554,840 _05826 MPMX19_05827: MPMX19_05827 - hypothetical protein, at 554,847 to 556,628 _05827 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.421 kb on + strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.422 kb on - strandat 552.637 kb on + strand, within MPMX19_05824at 552.638 kb on - strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.844 kb on + strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 552.845 kb on - strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.099 kb on + strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.100 kb on - strand, within MPMX19_05824at 553.496 kb on + strand, within MPMX19_05825at 553.496 kb on + strand, within MPMX19_05825at 553.496 kb on + strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.497 kb on - strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.742 kb on + strand, within MPMX19_05825at 553.743 kb on - strand, within MPMX19_05825at 553.743 kb on - strand, within MPMX19_05825at 554.078 kb on + strandat 554.079 kb on - strandat 554.079 kb on - strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.104 kb on + strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.105 kb on - strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.144 kb on + strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.145 kb on - strandat 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.553 kb on + strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.554 kb on - strand, within MPMX19_05826at 554.998 kb on + strandat 554.998 kb on + strandat 554.998 kb on + strandat 554.999 kb on - strandat 554.999 kb on - strandat 554.999 kb on - strandat 554.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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552,421 + +0.6
552,421 + -2.9
552,421 + -1.0
552,421 + +0.6
552,421 + -0.4
552,421 + -1.5
552,421 + -0.4
552,422 - -0.8
552,422 - -1.2
552,422 - +1.2
552,422 - -1.5
552,637 + MPMX19_05824 0.24 -0.2
552,638 - MPMX19_05824 0.24 -0.5
552,844 + MPMX19_05824 0.45 -0.6
552,844 + MPMX19_05824 0.45 +0.0
552,844 + MPMX19_05824 0.45 +1.2
552,845 - MPMX19_05824 0.45 +0.6
552,845 - MPMX19_05824 0.45 -1.8
552,845 - MPMX19_05824 0.45 -0.2
552,845 - MPMX19_05824 0.45 +0.5
552,845 - MPMX19_05824 0.45 -1.2
552,845 - MPMX19_05824 0.45 +0.0
552,845 - MPMX19_05824 0.45 -0.2
552,845 - MPMX19_05824 0.45 -1.0
553,099 + MPMX19_05824 0.70 -1.4
553,099 + MPMX19_05824 0.70 -1.4
553,099 + MPMX19_05824 0.70 -0.9
553,099 + MPMX19_05824 0.70 -0.4
553,100 - MPMX19_05824 0.70 +0.8
553,100 - MPMX19_05824 0.70 +0.4
553,100 - MPMX19_05824 0.70 -0.3
553,100 - MPMX19_05824 0.70 -0.2
553,100 - MPMX19_05824 0.70 -1.4
553,100 - MPMX19_05824 0.70 -0.5
553,496 + MPMX19_05825 0.12 -0.6
553,496 + MPMX19_05825 0.12 -2.2
553,496 + MPMX19_05825 0.12 -1.9
553,497 - MPMX19_05825 0.12 +1.8
553,497 - MPMX19_05825 0.12 -1.0
553,497 - MPMX19_05825 0.12 -0.5
553,497 - MPMX19_05825 0.12 -1.3
553,497 - MPMX19_05825 0.12 -0.8
553,497 - MPMX19_05825 0.12 -0.2
553,742 + MPMX19_05825 0.50 -0.2
553,742 + MPMX19_05825 0.50 -0.5
553,742 + MPMX19_05825 0.50 +1.2
553,743 - MPMX19_05825 0.51 +0.6
553,743 - MPMX19_05825 0.51 -0.2
554,078 + -0.8
554,079 - -0.8
554,079 - -0.3
554,104 + -1.5
554,104 + -1.1
554,104 + +0.4
554,104 + -0.8
554,105 - +1.2
554,105 - +0.5
554,105 - -0.2
554,105 - -1.0
554,105 - +0.1
554,105 - -1.6
554,144 + -1.4
554,144 + +1.8
554,144 + +0.4
554,144 + +0.8
554,144 + +0.5
554,144 + -0.8
554,144 + -1.4
554,144 + +0.6
554,144 + -0.8
554,144 + -0.4
554,144 + -0.8
554,144 + +0.2
554,144 + -0.4
554,144 + -1.2
554,144 + +1.4
554,144 + +0.8
554,145 - -0.5
554,145 - -0.6
554,145 - -0.2
554,145 - -0.4
554,145 - +0.4
554,145 - -0.6
554,145 - -1.1
554,145 - +0.8
554,553 + MPMX19_05826 0.44 -0.3
554,553 + MPMX19_05826 0.44 +0.7
554,553 + MPMX19_05826 0.44 +3.4
554,553 + MPMX19_05826 0.44 +0.0
554,553 + MPMX19_05826 0.44 +0.1
554,554 - MPMX19_05826 0.44 +0.6
554,554 - MPMX19_05826 0.44 -1.4
554,554 - MPMX19_05826 0.44 -0.3
554,554 - MPMX19_05826 0.44 -2.0
554,554 - MPMX19_05826 0.44 +0.0
554,554 - MPMX19_05826 0.44 -0.5
554,998 + -0.3
554,998 + -0.7
554,998 + -1.0
554,999 - +1.2
554,999 - +0.3
554,999 - -1.8
554,999 - +0.2

Or see this region's nucleotide sequence