Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05820 and MPMX19_05821 are separated by 104 nucleotides MPMX19_05821 and MPMX19_05822 are separated by 645 nucleotides MPMX19_05822 and MPMX19_05823 are separated by 34 nucleotides MPMX19_05823 and MPMX19_05824 are separated by 155 nucleotides
MPMX19_05820: MPMX19_05820 - hypothetical protein, at 547,681 to 548,106
_05820
MPMX19_05821: MPMX19_05821 - hypothetical protein, at 548,211 to 548,456
_05821
MPMX19_05822: MPMX19_05822 - Sensor histidine kinase RcsC, at 549,102 to 551,894
_05822
MPMX19_05823: MPMX19_05823 - hypothetical protein, at 551,929 to 552,234
_05823
MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403
_05824
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.476 kb on + strand at 548.476 kb on + strand at 548.742 kb on + strand at 548.742 kb on + strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.858 kb on - strand at 548.858 kb on - strand at 548.889 kb on + strand at 548.889 kb on + strand at 548.891 kb on + strand at 548.892 kb on - strand at 549.013 kb on + strand at 549.014 kb on - strand at 549.041 kb on + strand at 549.041 kb on + strand at 549.115 kb on + strand at 549.115 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.189 kb on + strand at 549.189 kb on + strand at 549.190 kb on - strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.373 kb on - strand at 549.373 kb on - strand at 549.411 kb on + strand, within MPMX19_05822 at 549.411 kb on + strand, within MPMX19_05822 at 549.412 kb on - strand, within MPMX19_05822 at 549.412 kb on - strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.556 kb on - strand, within MPMX19_05822 at 549.556 kb on - strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.699 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.928 kb on + strand, within MPMX19_05822 at 550.014 kb on + strand, within MPMX19_05822 at 550.014 kb on + strand, within MPMX19_05822 at 550.015 kb on - strand, within MPMX19_05822 at 550.049 kb on - strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.519 kb on + strand, within MPMX19_05822 at 550.519 kb on + strand, within MPMX19_05822 at 550.520 kb on - strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 551.820 kb on + strand at 551.820 kb on + strand at 551.820 kb on + strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.907 kb on + strand at 551.908 kb on - strand at 552.114 kb on - strand, within MPMX19_05823 at 552.114 kb on - strand, within MPMX19_05823 at 552.152 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.316 kb on - strand at 552.316 kb on - strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.637 kb on + strand, within MPMX19_05824 at 552.638 kb on - strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 548,476 + -0.9 548,476 + -0.2 548,742 + -1.6 548,742 + -0.8 548,743 - -1.6 548,743 - -0.8 548,743 - +0.1 548,743 - +1.5 548,743 - -0.3 548,743 - -1.1 548,743 - -0.4 548,752 + +0.5 548,752 + -0.2 548,752 + +0.5 548,752 + -1.0 548,752 + -2.7 548,753 - -0.6 548,753 - +0.4 548,753 - -1.3 548,753 - -2.0 548,782 + +0.7 548,782 + -1.5 548,782 + +0.2 548,782 + -1.2 548,783 - -0.1 548,783 - -0.4 548,783 - -1.1 548,783 - +0.3 548,783 - +0.6 548,858 - -0.2 548,858 - -0.6 548,889 + -0.9 548,889 + -2.3 548,891 + -0.4 548,892 - -0.0 549,013 + -2.5 549,014 - -0.4 549,041 + -0.4 549,041 + -0.5 549,115 + -0.6 549,115 + -0.7 549,180 + -2.1 549,180 + +0.2 549,180 + -1.3 549,180 + -1.0 549,180 + -0.5 549,180 + -0.6 549,180 + -2.2 549,180 + -1.5 549,180 + -1.1 549,181 - +0.1 549,181 - -0.2 549,181 - +0.4 549,181 - +0.8 549,181 - -1.2 549,181 - -1.2 549,183 + -0.5 549,183 + -0.3 549,183 + -0.0 549,183 + -1.0 549,183 + +0.7 549,183 + -1.5 549,183 + -0.1 549,183 + -1.6 549,183 + -0.3 549,184 - -0.9 549,184 - -1.0 549,184 - +0.6 549,184 - +1.1 549,184 - -2.4 549,184 - -1.2 549,184 - +0.0 549,184 - +1.2 549,184 - -0.9 549,184 - -0.4 549,184 - -0.3 549,184 - -0.4 549,184 - -1.6 549,189 + -1.6 549,189 + -1.5 549,190 - -1.9 549,283 + -2.0 549,283 + -1.0 549,283 + -0.5 549,283 + -1.5 549,283 + +0.5 549,283 + -0.6 549,283 + -1.2 549,284 - -1.2 549,284 - +0.4 549,284 - -0.8 549,284 - -0.6 549,284 - -0.8 549,284 - -0.2 549,373 - -2.3 549,373 - -0.3 549,411 + MPMX19_05822 0.11 +1.0 549,411 + MPMX19_05822 0.11 +0.4 549,412 - MPMX19_05822 0.11 +0.1 549,412 - MPMX19_05822 0.11 -0.1 549,555 + MPMX19_05822 0.16 -0.6 549,555 + MPMX19_05822 0.16 -1.6 549,555 + MPMX19_05822 0.16 +0.5 549,555 + MPMX19_05822 0.16 +1.4 549,556 - MPMX19_05822 0.16 +0.0 549,556 - MPMX19_05822 0.16 +0.4 549,657 + MPMX19_05822 0.20 -1.2 549,657 + MPMX19_05822 0.20 +0.5 549,657 + MPMX19_05822 0.20 +0.8 549,657 + MPMX19_05822 0.20 -1.1 549,657 + MPMX19_05822 0.20 -0.8 549,657 + MPMX19_05822 0.20 +0.4 549,657 + MPMX19_05822 0.20 -1.0 549,657 + MPMX19_05822 0.20 -1.4 549,657 + MPMX19_05822 0.20 -2.0 549,657 + MPMX19_05822 0.20 -1.7 549,657 + MPMX19_05822 0.20 +0.5 549,657 + MPMX19_05822 0.20 -0.8 549,657 + MPMX19_05822 0.20 -0.8 549,658 - MPMX19_05822 0.20 -0.1 549,658 - MPMX19_05822 0.20 +0.0 549,658 - MPMX19_05822 0.20 +0.0 549,658 - MPMX19_05822 0.20 +0.6 549,658 - MPMX19_05822 0.20 +0.0 549,658 - MPMX19_05822 0.20 -0.5 549,658 - MPMX19_05822 0.20 +0.6 549,658 - MPMX19_05822 0.20 -0.4 549,699 + MPMX19_05822 0.21 -1.4 549,879 + MPMX19_05822 0.28 -1.5 549,879 + MPMX19_05822 0.28 +0.6 549,879 + MPMX19_05822 0.28 -0.6 549,879 + MPMX19_05822 0.28 -0.3 549,880 - MPMX19_05822 0.28 -0.5 549,880 - MPMX19_05822 0.28 -0.2 549,880 - MPMX19_05822 0.28 +1.3 549,880 - MPMX19_05822 0.28 +0.1 549,880 - MPMX19_05822 0.28 +0.5 549,928 + MPMX19_05822 0.30 +0.8 550,014 + MPMX19_05822 0.33 -0.5 550,014 + MPMX19_05822 0.33 -0.6 550,015 - MPMX19_05822 0.33 -0.6 550,049 - MPMX19_05822 0.34 +0.5 550,305 + MPMX19_05822 0.43 -0.4 550,305 + MPMX19_05822 0.43 +0.2 550,305 + MPMX19_05822 0.43 -2.1 550,305 + MPMX19_05822 0.43 -1.6 550,305 + MPMX19_05822 0.43 +0.6 550,305 + MPMX19_05822 0.43 -0.7 550,306 - MPMX19_05822 0.43 +0.0 550,306 - MPMX19_05822 0.43 +0.5 550,306 - MPMX19_05822 0.43 +0.4 550,306 - MPMX19_05822 0.43 +1.5 550,306 - MPMX19_05822 0.43 -1.2 550,306 - MPMX19_05822 0.43 +0.2 550,519 + MPMX19_05822 0.51 +1.9 550,519 + MPMX19_05822 0.51 +0.3 550,520 - MPMX19_05822 0.51 +0.4 550,581 + MPMX19_05822 0.53 -0.4 550,581 + MPMX19_05822 0.53 -0.8 550,581 + MPMX19_05822 0.53 -1.1 550,581 + MPMX19_05822 0.53 -0.3 550,581 + MPMX19_05822 0.53 -0.0 550,581 + MPMX19_05822 0.53 +1.2 550,581 + MPMX19_05822 0.53 +0.7 550,581 + MPMX19_05822 0.53 -1.1 550,582 - MPMX19_05822 0.53 -2.8 550,582 - MPMX19_05822 0.53 +0.0 550,582 - MPMX19_05822 0.53 +2.2 550,582 - MPMX19_05822 0.53 +0.4 551,820 + +0.9 551,820 + -1.4 551,820 + +0.2 551,821 - -0.9 551,821 - -1.4 551,821 - +0.8 551,821 - +0.6 551,821 - -0.3 551,907 + -2.2 551,908 - -0.4 552,114 - MPMX19_05823 0.60 +0.1 552,114 - MPMX19_05823 0.60 -1.4 552,152 + MPMX19_05823 0.73 -1.6 552,197 + MPMX19_05823 0.88 +0.5 552,197 + MPMX19_05823 0.88 -0.1 552,197 + MPMX19_05823 0.88 +0.2 552,197 + MPMX19_05823 0.88 +0.2 552,197 + MPMX19_05823 0.88 -0.4 552,197 + MPMX19_05823 0.88 -0.5 552,197 + MPMX19_05823 0.88 +1.6 552,197 + MPMX19_05823 0.88 -1.0 552,197 + MPMX19_05823 0.88 -0.4 552,197 + MPMX19_05823 0.88 -1.0 552,197 + MPMX19_05823 0.88 -0.7 552,197 + MPMX19_05823 0.88 -1.0 552,197 + MPMX19_05823 0.88 -1.4 552,198 - MPMX19_05823 0.88 -0.5 552,198 - MPMX19_05823 0.88 -0.8 552,198 - MPMX19_05823 0.88 +0.7 552,198 - MPMX19_05823 0.88 +0.1 552,198 - MPMX19_05823 0.88 +0.5 552,198 - MPMX19_05823 0.88 +1.0 552,198 - MPMX19_05823 0.88 +0.2 552,198 - MPMX19_05823 0.88 +0.9 552,198 - MPMX19_05823 0.88 +0.2 552,198 - MPMX19_05823 0.88 -0.6 552,198 - MPMX19_05823 0.88 -0.2 552,198 - MPMX19_05823 0.88 +0.1 552,316 - +1.0 552,316 - -0.4 552,421 + +0.6 552,421 + -2.9 552,421 + -1.0 552,421 + +0.6 552,421 + -0.4 552,421 + -1.5 552,421 + -0.4 552,422 - -0.8 552,422 - -1.2 552,422 - +1.2 552,422 - -1.5 552,637 + MPMX19_05824 0.24 -0.2 552,638 - MPMX19_05824 0.24 -0.5 552,844 + MPMX19_05824 0.45 -0.6 552,844 + MPMX19_05824 0.45 +0.0 552,844 + MPMX19_05824 0.45 +1.2 552,845 - MPMX19_05824 0.45 +0.6 552,845 - MPMX19_05824 0.45 -1.8 552,845 - MPMX19_05824 0.45 -0.2 552,845 - MPMX19_05824 0.45 +0.5 552,845 - MPMX19_05824 0.45 -1.2 552,845 - MPMX19_05824 0.45 +0.0 552,845 - MPMX19_05824 0.45 -0.2 552,845 - MPMX19_05824 0.45 -1.0
Or see this region's nucleotide sequence