Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05810

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05809 and MPMX19_05810 are separated by 344 nucleotidesMPMX19_05810 and MPMX19_05811 are separated by 27 nucleotides MPMX19_05809: MPMX19_05809 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT, at 535,412 to 536,722 _05809 MPMX19_05810: MPMX19_05810 - Methylated-DNA--protein-cysteine methyltransferase, at 537,067 to 537,603 _05810 MPMX19_05811: MPMX19_05811 - 2,4-dienoyl-CoA reductase, at 537,631 to 539,682 _05811 Position (kb) 537 538Strain fitness (log2 ratio) -2 -1 0 1 2at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.175 kb on + strand, within MPMX19_05809at 536.176 kb on - strand, within MPMX19_05809at 536.176 kb on - strand, within MPMX19_05809at 536.190 kb on + strand, within MPMX19_05809at 536.190 kb on + strand, within MPMX19_05809at 536.191 kb on - strand, within MPMX19_05809at 536.191 kb on - strand, within MPMX19_05809at 536.601 kb on + strandat 536.601 kb on + strandat 536.602 kb on - strandat 536.602 kb on - strandat 536.602 kb on - strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.707 kb on + strandat 536.708 kb on - strandat 536.760 kb on + strandat 536.760 kb on + strandat 536.761 kb on - strandat 536.858 kb on + strandat 536.859 kb on - strandat 537.053 kb on + strandat 537.223 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.277 kb on + strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.278 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.395 kb on - strand, within MPMX19_05810at 537.612 kb on + strandat 537.612 kb on + strandat 537.612 kb on + strandat 537.613 kb on - strandat 537.613 kb on - strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.632 kb on + strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.633 kb on - strandat 537.869 kb on + strand, within MPMX19_05811at 537.870 kb on - strand, within MPMX19_05811at 537.870 kb on - strand, within MPMX19_05811at 537.870 kb on - strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.208 kb on + strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.209 kb on - strand, within MPMX19_05811at 538.374 kb on - strand, within MPMX19_05811

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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536,175 + MPMX19_05809 0.58 -0.0
536,175 + MPMX19_05809 0.58 -1.0
536,175 + MPMX19_05809 0.58 -2.4
536,175 + MPMX19_05809 0.58 -0.8
536,175 + MPMX19_05809 0.58 +0.3
536,175 + MPMX19_05809 0.58 +0.5
536,176 - MPMX19_05809 0.58 -0.6
536,176 - MPMX19_05809 0.58 -2.2
536,190 + MPMX19_05809 0.59 -1.2
536,190 + MPMX19_05809 0.59 +0.0
536,191 - MPMX19_05809 0.59 +0.0
536,191 - MPMX19_05809 0.59 -1.9
536,601 + -2.2
536,601 + -0.5
536,602 - -1.0
536,602 - +0.0
536,602 - -0.8
536,707 + -0.9
536,707 + -0.9
536,707 + -1.3
536,707 + -1.7
536,708 - +0.2
536,760 + -1.0
536,760 + -2.0
536,761 - +0.4
536,858 + -0.7
536,859 - -1.0
537,053 + -0.4
537,223 + MPMX19_05810 0.29 -0.9
537,277 + MPMX19_05810 0.39 -0.2
537,277 + MPMX19_05810 0.39 -0.9
537,277 + MPMX19_05810 0.39 -0.1
537,278 - MPMX19_05810 0.39 -0.8
537,278 - MPMX19_05810 0.39 -1.4
537,278 - MPMX19_05810 0.39 -1.8
537,278 - MPMX19_05810 0.39 -0.6
537,278 - MPMX19_05810 0.39 -2.3
537,278 - MPMX19_05810 0.39 -0.0
537,278 - MPMX19_05810 0.39 -1.4
537,278 - MPMX19_05810 0.39 -1.5
537,278 - MPMX19_05810 0.39 -0.2
537,395 - MPMX19_05810 0.61 -1.6
537,395 - MPMX19_05810 0.61 -2.2
537,395 - MPMX19_05810 0.61 -0.4
537,612 + -0.5
537,612 + -1.0
537,612 + +0.1
537,613 - -0.1
537,613 - -1.9
537,632 + -1.0
537,632 + +0.5
537,632 + +0.6
537,632 + -1.0
537,632 + +1.4
537,633 - -0.0
537,633 - -0.8
537,633 - +1.4
537,633 - -0.9
537,633 - -0.2
537,633 - -0.6
537,633 - +0.2
537,869 + MPMX19_05811 0.12 +1.8
537,870 - MPMX19_05811 0.12 +0.0
537,870 - MPMX19_05811 0.12 -2.4
537,870 - MPMX19_05811 0.12 +0.2
538,208 + MPMX19_05811 0.28 -0.7
538,208 + MPMX19_05811 0.28 +0.3
538,208 + MPMX19_05811 0.28 -0.8
538,208 + MPMX19_05811 0.28 -2.0
538,208 + MPMX19_05811 0.28 +1.1
538,208 + MPMX19_05811 0.28 -0.3
538,208 + MPMX19_05811 0.28 -0.2
538,208 + MPMX19_05811 0.28 +0.0
538,208 + MPMX19_05811 0.28 -0.2
538,208 + MPMX19_05811 0.28 +1.1
538,208 + MPMX19_05811 0.28 -0.4
538,208 + MPMX19_05811 0.28 -0.5
538,208 + MPMX19_05811 0.28 +0.5
538,208 + MPMX19_05811 0.28 +0.6
538,209 - MPMX19_05811 0.28 -0.1
538,209 - MPMX19_05811 0.28 -0.5
538,209 - MPMX19_05811 0.28 +1.2
538,209 - MPMX19_05811 0.28 -0.1
538,209 - MPMX19_05811 0.28 +1.5
538,209 - MPMX19_05811 0.28 +1.3
538,209 - MPMX19_05811 0.28 -0.8
538,209 - MPMX19_05811 0.28 -0.3
538,209 - MPMX19_05811 0.28 +0.1
538,209 - MPMX19_05811 0.28 +0.0
538,209 - MPMX19_05811 0.28 +0.2
538,209 - MPMX19_05811 0.28 +0.4
538,209 - MPMX19_05811 0.28 -0.6
538,209 - MPMX19_05811 0.28 +0.6
538,374 - MPMX19_05811 0.36 -0.5

Or see this region's nucleotide sequence