Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05799 and MPMX19_05800 are separated by 267 nucleotides MPMX19_05800 and MPMX19_05801 are separated by 632 nucleotides
MPMX19_05799: MPMX19_05799 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 521,786 to 522,841
_05799
MPMX19_05800: MPMX19_05800 - hypothetical protein, at 523,109 to 523,747
_05800
MPMX19_05801: MPMX19_05801 - Solute-binding protein, at 524,380 to 525,384
_05801
Position (kb) 523
524 Strain fitness (log2 ratio) -2
-1
0
1
2 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.476 kb on + strand, within MPMX19_05799 at 522.521 kb on + strand, within MPMX19_05799 at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.761 kb on - strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.861 kb on + strand at 523.861 kb on + strand at 523.861 kb on + strand at 524.025 kb on + strand at 524.124 kb on - strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.539 kb on + strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 522,272 + MPMX19_05799 0.46 -0.7 522,272 + MPMX19_05799 0.46 -0.6 522,272 + MPMX19_05799 0.46 -1.0 522,272 + MPMX19_05799 0.46 -1.4 522,272 + MPMX19_05799 0.46 -1.2 522,272 + MPMX19_05799 0.46 -0.1 522,272 + MPMX19_05799 0.46 -0.5 522,272 + MPMX19_05799 0.46 -1.1 522,272 + MPMX19_05799 0.46 -0.4 522,272 + MPMX19_05799 0.46 -0.2 522,273 - MPMX19_05799 0.46 -1.7 522,273 - MPMX19_05799 0.46 -1.1 522,273 - MPMX19_05799 0.46 +0.2 522,273 - MPMX19_05799 0.46 -1.2 522,273 - MPMX19_05799 0.46 +0.4 522,273 - MPMX19_05799 0.46 -1.2 522,273 - MPMX19_05799 0.46 -0.5 522,273 - MPMX19_05799 0.46 -1.1 522,273 - MPMX19_05799 0.46 -1.0 522,273 - MPMX19_05799 0.46 -1.1 522,273 - MPMX19_05799 0.46 -0.9 522,273 - MPMX19_05799 0.46 +0.1 522,273 - MPMX19_05799 0.46 -2.4 522,275 + MPMX19_05799 0.46 +0.1 522,275 + MPMX19_05799 0.46 -0.3 522,275 + MPMX19_05799 0.46 -1.1 522,275 + MPMX19_05799 0.46 -0.7 522,275 + MPMX19_05799 0.46 -0.8 522,275 + MPMX19_05799 0.46 -1.0 522,276 - MPMX19_05799 0.46 +0.4 522,276 - MPMX19_05799 0.46 +0.9 522,276 - MPMX19_05799 0.46 -0.1 522,476 + MPMX19_05799 0.65 -1.1 522,521 + MPMX19_05799 0.70 -0.3 522,908 - -0.5 522,908 - -1.4 522,908 - -1.1 522,908 - +0.5 522,908 - -1.4 523,655 + MPMX19_05800 0.85 -0.3 523,655 + MPMX19_05800 0.85 -0.7 523,655 + MPMX19_05800 0.85 -1.4 523,655 + MPMX19_05800 0.85 +1.1 523,655 + MPMX19_05800 0.85 -1.4 523,655 + MPMX19_05800 0.85 -1.5 523,655 + MPMX19_05800 0.85 -0.5 523,655 + MPMX19_05800 0.85 +0.4 523,655 + MPMX19_05800 0.85 -0.9 523,655 + MPMX19_05800 0.85 +0.2 523,656 - MPMX19_05800 0.86 -0.8 523,656 - MPMX19_05800 0.86 -0.2 523,656 - MPMX19_05800 0.86 +0.2 523,656 - MPMX19_05800 0.86 -1.0 523,656 - MPMX19_05800 0.86 -0.4 523,656 - MPMX19_05800 0.86 -0.5 523,656 - MPMX19_05800 0.86 -1.8 523,656 - MPMX19_05800 0.86 -0.8 523,656 - MPMX19_05800 0.86 -1.5 523,656 - MPMX19_05800 0.86 +0.8 523,679 + MPMX19_05800 0.89 +0.3 523,679 + MPMX19_05800 0.89 -1.5 523,679 + MPMX19_05800 0.89 -0.5 523,679 + MPMX19_05800 0.89 -1.9 523,679 + MPMX19_05800 0.89 -1.0 523,679 + MPMX19_05800 0.89 +0.8 523,679 + MPMX19_05800 0.89 -2.1 523,679 + MPMX19_05800 0.89 -1.2 523,679 + MPMX19_05800 0.89 -2.4 523,679 + MPMX19_05800 0.89 -2.1 523,679 + MPMX19_05800 0.89 -0.8 523,679 + MPMX19_05800 0.89 -0.1 523,679 + MPMX19_05800 0.89 +0.6 523,679 + MPMX19_05800 0.89 -0.6 523,679 + MPMX19_05800 0.89 -1.8 523,679 + MPMX19_05800 0.89 -1.0 523,679 + MPMX19_05800 0.89 -1.5 523,680 - MPMX19_05800 0.89 -1.6 523,680 - MPMX19_05800 0.89 +1.1 523,680 - MPMX19_05800 0.89 +1.0 523,680 - MPMX19_05800 0.89 -0.1 523,680 - MPMX19_05800 0.89 -0.5 523,680 - MPMX19_05800 0.89 -0.6 523,680 - MPMX19_05800 0.89 -0.8 523,680 - MPMX19_05800 0.89 +0.6 523,680 - MPMX19_05800 0.89 +0.5 523,680 - MPMX19_05800 0.89 -0.2 523,680 - MPMX19_05800 0.89 +0.6 523,680 - MPMX19_05800 0.89 -1.6 523,680 - MPMX19_05800 0.89 -0.5 523,700 + -0.4 523,700 + -1.5 523,700 + -1.0 523,700 + +0.8 523,700 + -0.1 523,700 + -0.8 523,700 + -1.1 523,700 + -0.8 523,700 + -1.8 523,701 - +0.2 523,701 - +0.8 523,701 - -0.2 523,701 - +0.4 523,701 - +1.2 523,701 - +0.6 523,701 - +0.2 523,761 - -1.0 523,778 + +0.6 523,778 + -1.0 523,778 + +0.7 523,778 + -0.1 523,779 - -0.8 523,779 - -1.2 523,779 - +0.2 523,779 - -1.0 523,800 + +0.5 523,800 + +0.8 523,800 + -0.2 523,800 + -1.6 523,861 + +2.1 523,861 + -0.6 523,861 + +0.2 524,025 + -0.5 524,124 - +0.4 524,267 + -0.4 524,267 + -0.1 524,267 + -2.3 524,267 + +0.5 524,267 + +0.8 524,267 + -0.9 524,268 - -0.2 524,268 - -0.7 524,268 - +0.6 524,268 - -0.8 524,268 - -1.4 524,268 - -0.4 524,268 - -0.1 524,268 - +0.4 524,268 - -0.2 524,268 - +0.4 524,268 - +0.4 524,268 - +1.8 524,268 - -1.4 524,379 + -0.9 524,379 + -0.6 524,379 + -0.5 524,379 + -1.6 524,379 + -1.4 524,379 + -1.4 524,379 + +0.2 524,379 + +0.2 524,379 + -1.5 524,379 + -0.4 524,379 + -0.6 524,379 + -0.2 524,379 + -1.1 524,379 + +1.4 524,380 - -0.2 524,380 - -1.4 524,380 - -1.0 524,380 - +0.5 524,380 - -0.5 524,380 - -0.8 524,380 - -1.2 524,380 - -1.4 524,380 - +0.0 524,380 - -0.6 524,380 - -0.4 524,380 - -0.2 524,380 - +0.0 524,539 + MPMX19_05801 0.16 -1.4 524,540 - MPMX19_05801 0.16 +0.6 524,540 - MPMX19_05801 0.16 -0.4 524,540 - MPMX19_05801 0.16 -0.3 524,540 - MPMX19_05801 0.16 -1.5
Or see this region's nucleotide sequence