Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05795

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05794 and MPMX19_05795 are separated by 52 nucleotidesMPMX19_05795 and MPMX19_05796 are separated by 34 nucleotidesMPMX19_05796 and MPMX19_05797 are separated by 73 nucleotides MPMX19_05794: MPMX19_05794 - Riboflavin transporter, at 517,298 to 518,290 _05794 MPMX19_05795: MPMX19_05795 - 2-dehydro-3-deoxygluconokinase, at 518,343 to 519,263 _05795 MPMX19_05796: MPMX19_05796 - HTH-type transcriptional repressor BdcR, at 519,298 to 519,900 _05796 MPMX19_05797: MPMX19_05797 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 519,974 to 520,687 _05797 Position (kb) 518 519 520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 517.490 kb on + strand, within MPMX19_05794at 517.491 kb on - strand, within MPMX19_05794at 517.491 kb on - strand, within MPMX19_05794at 517.491 kb on - strand, within MPMX19_05794at 517.535 kb on + strand, within MPMX19_05794at 517.535 kb on + strand, within MPMX19_05794at 517.535 kb on + strand, within MPMX19_05794at 517.535 kb on + strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 517.536 kb on - strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.057 kb on + strand, within MPMX19_05794at 518.058 kb on - strand, within MPMX19_05794at 518.058 kb on - strand, within MPMX19_05794at 518.058 kb on - strand, within MPMX19_05794at 518.058 kb on - strand, within MPMX19_05794at 518.058 kb on - strand, within MPMX19_05794at 518.090 kb on + strand, within MPMX19_05794at 518.091 kb on - strand, within MPMX19_05794at 518.091 kb on - strand, within MPMX19_05794at 518.091 kb on - strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.129 kb on + strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.130 kb on - strand, within MPMX19_05794at 518.234 kb on + strandat 518.234 kb on + strandat 518.234 kb on + strandat 518.234 kb on + strandat 518.234 kb on + strandat 518.235 kb on - strandat 518.235 kb on - strandat 518.235 kb on - strandat 518.235 kb on - strandat 518.235 kb on - strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.288 kb on + strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.289 kb on - strandat 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.460 kb on + strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.461 kb on - strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.490 kb on + strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.491 kb on - strand, within MPMX19_05795at 518.604 kb on + strand, within MPMX19_05795at 518.604 kb on + strand, within MPMX19_05795at 518.604 kb on + strand, within MPMX19_05795at 518.604 kb on + strand, within MPMX19_05795at 518.605 kb on - strand, within MPMX19_05795at 518.605 kb on - strand, within MPMX19_05795at 518.605 kb on - strand, within MPMX19_05795at 518.605 kb on - strand, within MPMX19_05795at 518.605 kb on - strand, within MPMX19_05795at 518.646 kb on + strand, within MPMX19_05795at 518.646 kb on + strand, within MPMX19_05795at 518.646 kb on + strand, within MPMX19_05795at 518.647 kb on - strand, within MPMX19_05795at 518.647 kb on - strand, within MPMX19_05795at 518.725 kb on - strand, within MPMX19_05795at 518.725 kb on - strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.736 kb on + strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.737 kb on - strand, within MPMX19_05795at 518.955 kb on + strand, within MPMX19_05795at 518.955 kb on + strand, within MPMX19_05795at 518.956 kb on - strand, within MPMX19_05795at 518.956 kb on - strand, within MPMX19_05795at 518.956 kb on - strand, within MPMX19_05795at 519.141 kb on + strand, within MPMX19_05795at 519.141 kb on + strand, within MPMX19_05795at 519.141 kb on + strand, within MPMX19_05795at 519.141 kb on + strand, within MPMX19_05795at 519.142 kb on - strand, within MPMX19_05795at 519.357 kb on + strandat 519.358 kb on - strandat 519.591 kb on - strand, within MPMX19_05796at 519.690 kb on - strand, within MPMX19_05796at 519.690 kb on - strand, within MPMX19_05796at 519.690 kb on - strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.740 kb on + strand, within MPMX19_05796at 519.741 kb on - strand, within MPMX19_05796at 519.801 kb on - strand, within MPMX19_05796at 519.801 kb on - strand, within MPMX19_05796at 519.801 kb on - strand, within MPMX19_05796at 519.931 kb on + strandat 519.932 kb on - strandat 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.082 kb on + strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797at 520.083 kb on - strand, within MPMX19_05797

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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517,490 + MPMX19_05794 0.19 -0.6
517,491 - MPMX19_05794 0.19 -1.0
517,491 - MPMX19_05794 0.19 -0.4
517,491 - MPMX19_05794 0.19 -1.5
517,535 + MPMX19_05794 0.24 -1.9
517,535 + MPMX19_05794 0.24 +0.0
517,535 + MPMX19_05794 0.24 -2.1
517,535 + MPMX19_05794 0.24 +0.4
517,536 - MPMX19_05794 0.24 +0.3
517,536 - MPMX19_05794 0.24 -2.4
517,536 - MPMX19_05794 0.24 +0.5
517,536 - MPMX19_05794 0.24 +0.8
517,536 - MPMX19_05794 0.24 -0.6
517,536 - MPMX19_05794 0.24 +0.1
517,536 - MPMX19_05794 0.24 +0.1
517,536 - MPMX19_05794 0.24 +1.6
517,536 - MPMX19_05794 0.24 -1.8
517,536 - MPMX19_05794 0.24 +0.0
518,057 + MPMX19_05794 0.76 -0.6
518,057 + MPMX19_05794 0.76 -0.8
518,057 + MPMX19_05794 0.76 +0.4
518,057 + MPMX19_05794 0.76 -1.4
518,057 + MPMX19_05794 0.76 -1.2
518,057 + MPMX19_05794 0.76 -0.6
518,057 + MPMX19_05794 0.76 +0.7
518,058 - MPMX19_05794 0.77 -1.2
518,058 - MPMX19_05794 0.77 -1.6
518,058 - MPMX19_05794 0.77 +1.6
518,058 - MPMX19_05794 0.77 +2.0
518,058 - MPMX19_05794 0.77 -0.5
518,090 + MPMX19_05794 0.80 +0.1
518,091 - MPMX19_05794 0.80 +1.5
518,091 - MPMX19_05794 0.80 +0.6
518,091 - MPMX19_05794 0.80 -0.5
518,129 + MPMX19_05794 0.84 +1.2
518,129 + MPMX19_05794 0.84 +0.2
518,129 + MPMX19_05794 0.84 -2.6
518,129 + MPMX19_05794 0.84 +1.8
518,129 + MPMX19_05794 0.84 -1.9
518,129 + MPMX19_05794 0.84 -0.7
518,129 + MPMX19_05794 0.84 -1.0
518,129 + MPMX19_05794 0.84 -0.2
518,129 + MPMX19_05794 0.84 +0.2
518,129 + MPMX19_05794 0.84 -0.2
518,130 - MPMX19_05794 0.84 -0.7
518,130 - MPMX19_05794 0.84 -1.0
518,130 - MPMX19_05794 0.84 -0.3
518,130 - MPMX19_05794 0.84 +0.2
518,130 - MPMX19_05794 0.84 -1.0
518,130 - MPMX19_05794 0.84 -0.5
518,130 - MPMX19_05794 0.84 -0.8
518,130 - MPMX19_05794 0.84 -0.5
518,234 + -1.4
518,234 + -0.5
518,234 + +0.5
518,234 + -0.9
518,234 + +0.7
518,235 - -0.1
518,235 - -1.1
518,235 - +0.2
518,235 - -1.2
518,235 - +0.5
518,288 + +0.6
518,288 + +0.5
518,288 + -1.5
518,288 + +1.2
518,288 + -1.1
518,288 + -1.2
518,288 + -0.6
518,288 + +0.1
518,288 + -0.8
518,288 + +0.3
518,288 + -1.0
518,288 + -0.8
518,289 - -0.4
518,289 - -1.8
518,289 - -1.4
518,289 - -0.1
518,289 - +0.2
518,289 - -0.5
518,289 - -0.4
518,289 - -0.7
518,289 - +2.4
518,460 + MPMX19_05795 0.13 -2.2
518,460 + MPMX19_05795 0.13 -0.5
518,460 + MPMX19_05795 0.13 -0.1
518,460 + MPMX19_05795 0.13 +0.4
518,460 + MPMX19_05795 0.13 +0.1
518,460 + MPMX19_05795 0.13 -1.6
518,460 + MPMX19_05795 0.13 -0.3
518,461 - MPMX19_05795 0.13 +1.8
518,461 - MPMX19_05795 0.13 +1.8
518,461 - MPMX19_05795 0.13 +0.5
518,461 - MPMX19_05795 0.13 +0.8
518,461 - MPMX19_05795 0.13 -0.8
518,461 - MPMX19_05795 0.13 +0.0
518,461 - MPMX19_05795 0.13 -1.4
518,461 - MPMX19_05795 0.13 -0.5
518,490 + MPMX19_05795 0.16 +0.4
518,490 + MPMX19_05795 0.16 +1.1
518,490 + MPMX19_05795 0.16 -0.7
518,490 + MPMX19_05795 0.16 -2.0
518,490 + MPMX19_05795 0.16 -0.5
518,490 + MPMX19_05795 0.16 -1.1
518,490 + MPMX19_05795 0.16 -0.6
518,490 + MPMX19_05795 0.16 -0.1
518,490 + MPMX19_05795 0.16 -1.2
518,490 + MPMX19_05795 0.16 -1.2
518,490 + MPMX19_05795 0.16 -0.2
518,490 + MPMX19_05795 0.16 -0.8
518,491 - MPMX19_05795 0.16 -0.8
518,491 - MPMX19_05795 0.16 -1.2
518,491 - MPMX19_05795 0.16 +1.8
518,491 - MPMX19_05795 0.16 -0.9
518,491 - MPMX19_05795 0.16 +0.9
518,491 - MPMX19_05795 0.16 -1.2
518,491 - MPMX19_05795 0.16 +1.4
518,491 - MPMX19_05795 0.16 +0.2
518,491 - MPMX19_05795 0.16 -0.9
518,491 - MPMX19_05795 0.16 -0.9
518,491 - MPMX19_05795 0.16 +0.4
518,604 + MPMX19_05795 0.28 -0.8
518,604 + MPMX19_05795 0.28 -1.0
518,604 + MPMX19_05795 0.28 +0.5
518,604 + MPMX19_05795 0.28 +0.8
518,605 - MPMX19_05795 0.28 -0.8
518,605 - MPMX19_05795 0.28 +0.3
518,605 - MPMX19_05795 0.28 -1.4
518,605 - MPMX19_05795 0.28 +0.7
518,605 - MPMX19_05795 0.28 -1.4
518,646 + MPMX19_05795 0.33 -0.8
518,646 + MPMX19_05795 0.33 -0.1
518,646 + MPMX19_05795 0.33 +0.9
518,647 - MPMX19_05795 0.33 -0.6
518,647 - MPMX19_05795 0.33 -0.9
518,725 - MPMX19_05795 0.41 -1.6
518,725 - MPMX19_05795 0.41 -3.0
518,736 + MPMX19_05795 0.43 -0.5
518,736 + MPMX19_05795 0.43 +1.8
518,736 + MPMX19_05795 0.43 -0.3
518,736 + MPMX19_05795 0.43 -1.9
518,736 + MPMX19_05795 0.43 +0.5
518,736 + MPMX19_05795 0.43 -0.6
518,736 + MPMX19_05795 0.43 -1.5
518,736 + MPMX19_05795 0.43 +1.4
518,736 + MPMX19_05795 0.43 +0.4
518,736 + MPMX19_05795 0.43 +0.8
518,737 - MPMX19_05795 0.43 +1.3
518,737 - MPMX19_05795 0.43 -0.5
518,737 - MPMX19_05795 0.43 +0.4
518,737 - MPMX19_05795 0.43 -0.2
518,737 - MPMX19_05795 0.43 +0.8
518,737 - MPMX19_05795 0.43 -0.6
518,737 - MPMX19_05795 0.43 +0.4
518,737 - MPMX19_05795 0.43 -2.4
518,737 - MPMX19_05795 0.43 +0.0
518,737 - MPMX19_05795 0.43 +0.0
518,955 + MPMX19_05795 0.66 +0.6
518,955 + MPMX19_05795 0.66 -0.2
518,956 - MPMX19_05795 0.67 +0.4
518,956 - MPMX19_05795 0.67 -0.2
518,956 - MPMX19_05795 0.67 -1.2
519,141 + MPMX19_05795 0.87 -1.5
519,141 + MPMX19_05795 0.87 -0.5
519,141 + MPMX19_05795 0.87 +0.5
519,141 + MPMX19_05795 0.87 -0.4
519,142 - MPMX19_05795 0.87 -0.2
519,357 + -0.4
519,358 - -2.1
519,591 - MPMX19_05796 0.49 -0.1
519,690 - MPMX19_05796 0.65 -2.4
519,690 - MPMX19_05796 0.65 +0.8
519,690 - MPMX19_05796 0.65 -1.9
519,740 + MPMX19_05796 0.73 -0.7
519,740 + MPMX19_05796 0.73 -2.5
519,740 + MPMX19_05796 0.73 -0.1
519,740 + MPMX19_05796 0.73 -1.6
519,740 + MPMX19_05796 0.73 -0.8
519,740 + MPMX19_05796 0.73 -1.2
519,740 + MPMX19_05796 0.73 +0.4
519,741 - MPMX19_05796 0.73 -0.8
519,801 - MPMX19_05796 0.83 -0.7
519,801 - MPMX19_05796 0.83 -0.9
519,801 - MPMX19_05796 0.83 -0.6
519,931 + -1.2
519,932 - -1.0
520,082 + MPMX19_05797 0.15 -0.9
520,082 + MPMX19_05797 0.15 -0.1
520,082 + MPMX19_05797 0.15 -1.9
520,082 + MPMX19_05797 0.15 +0.6
520,082 + MPMX19_05797 0.15 -0.2
520,082 + MPMX19_05797 0.15 -0.7
520,082 + MPMX19_05797 0.15 -0.9
520,082 + MPMX19_05797 0.15 -0.2
520,082 + MPMX19_05797 0.15 +0.2
520,082 + MPMX19_05797 0.15 +0.2
520,083 - MPMX19_05797 0.15 -1.6
520,083 - MPMX19_05797 0.15 -0.4
520,083 - MPMX19_05797 0.15 -1.5
520,083 - MPMX19_05797 0.15 -0.0
520,083 - MPMX19_05797 0.15 +0.8
520,083 - MPMX19_05797 0.15 +0.8
520,083 - MPMX19_05797 0.15 -1.0
520,083 - MPMX19_05797 0.15 -1.2
520,083 - MPMX19_05797 0.15 +0.1
520,083 - MPMX19_05797 0.15 -0.8
520,083 - MPMX19_05797 0.15 -0.2
520,083 - MPMX19_05797 0.15 -0.9
520,083 - MPMX19_05797 0.15 -0.3

Or see this region's nucleotide sequence