Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05776

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05775 and MPMX19_05776 overlap by 4 nucleotidesMPMX19_05776 and MPMX19_05777 overlap by 1 nucleotides MPMX19_05775: MPMX19_05775 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 497,282 to 498,973 _05775 MPMX19_05776: MPMX19_05776 - 1,2-epoxyphenylacetyl-CoA isomerase, at 498,970 to 499,761 _05776 MPMX19_05777: MPMX19_05777 - 3-hydroxyadipyl-CoA dehydrogenase, at 499,761 to 501,278 _05777 Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 498.137 kb on + strand, within MPMX19_05775at 498.137 kb on + strand, within MPMX19_05775at 498.137 kb on + strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.138 kb on - strand, within MPMX19_05775at 498.197 kb on + strand, within MPMX19_05775at 498.198 kb on - strand, within MPMX19_05775at 498.198 kb on - strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.220 kb on + strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.221 kb on - strand, within MPMX19_05775at 498.290 kb on + strand, within MPMX19_05775at 498.290 kb on + strand, within MPMX19_05775at 498.291 kb on - strand, within MPMX19_05775at 498.291 kb on - strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.608 kb on + strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.609 kb on - strand, within MPMX19_05775at 498.725 kb on + strand, within MPMX19_05775at 498.725 kb on + strand, within MPMX19_05775at 498.725 kb on + strand, within MPMX19_05775at 498.725 kb on + strand, within MPMX19_05775at 498.725 kb on + strand, within MPMX19_05775at 498.726 kb on - strand, within MPMX19_05775at 498.726 kb on - strand, within MPMX19_05775at 498.726 kb on - strand, within MPMX19_05775at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.234 kb on + strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.235 kb on - strand, within MPMX19_05776at 499.605 kb on + strand, within MPMX19_05776at 499.605 kb on + strand, within MPMX19_05776at 499.606 kb on - strand, within MPMX19_05776at 499.702 kb on + strandat 500.361 kb on + strand, within MPMX19_05777at 500.361 kb on + strand, within MPMX19_05777at 500.361 kb on + strand, within MPMX19_05777at 500.361 kb on + strand, within MPMX19_05777at 500.362 kb on - strand, within MPMX19_05777at 500.362 kb on - strand, within MPMX19_05777at 500.523 kb on + strand, within MPMX19_05777at 500.523 kb on + strand, within MPMX19_05777at 500.524 kb on - strand, within MPMX19_05777at 500.524 kb on - strand, within MPMX19_05777at 500.524 kb on - strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.557 kb on + strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.558 kb on - strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.613 kb on + strand, within MPMX19_05777at 500.614 kb on - strand, within MPMX19_05777at 500.614 kb on - strand, within MPMX19_05777at 500.614 kb on - strand, within MPMX19_05777at 500.614 kb on - strand, within MPMX19_05777at 500.614 kb on - strand, within MPMX19_05777

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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498,137 + MPMX19_05775 0.51 +0.0
498,137 + MPMX19_05775 0.51 -0.4
498,137 + MPMX19_05775 0.51 -1.5
498,138 - MPMX19_05775 0.51 -1.4
498,138 - MPMX19_05775 0.51 +0.3
498,138 - MPMX19_05775 0.51 +1.6
498,138 - MPMX19_05775 0.51 -0.8
498,138 - MPMX19_05775 0.51 -0.5
498,197 + MPMX19_05775 0.54 -0.5
498,198 - MPMX19_05775 0.54 +0.9
498,198 - MPMX19_05775 0.54 -0.5
498,220 + MPMX19_05775 0.55 -0.6
498,220 + MPMX19_05775 0.55 +1.2
498,220 + MPMX19_05775 0.55 +0.1
498,220 + MPMX19_05775 0.55 -0.5
498,220 + MPMX19_05775 0.55 -0.3
498,220 + MPMX19_05775 0.55 +1.1
498,220 + MPMX19_05775 0.55 -1.3
498,221 - MPMX19_05775 0.55 +0.6
498,221 - MPMX19_05775 0.55 -0.5
498,221 - MPMX19_05775 0.55 -0.9
498,221 - MPMX19_05775 0.55 +0.1
498,221 - MPMX19_05775 0.55 -0.6
498,221 - MPMX19_05775 0.55 +0.2
498,221 - MPMX19_05775 0.55 +0.4
498,221 - MPMX19_05775 0.55 -0.4
498,221 - MPMX19_05775 0.55 +0.4
498,221 - MPMX19_05775 0.55 +0.4
498,221 - MPMX19_05775 0.55 +0.0
498,221 - MPMX19_05775 0.55 +0.1
498,221 - MPMX19_05775 0.55 +0.1
498,221 - MPMX19_05775 0.55 -0.4
498,221 - MPMX19_05775 0.55 -1.1
498,290 + MPMX19_05775 0.60 +0.2
498,290 + MPMX19_05775 0.60 -0.6
498,291 - MPMX19_05775 0.60 -0.2
498,291 - MPMX19_05775 0.60 +0.3
498,608 + MPMX19_05775 0.78 +0.5
498,608 + MPMX19_05775 0.78 -0.0
498,608 + MPMX19_05775 0.78 -2.9
498,608 + MPMX19_05775 0.78 -1.6
498,608 + MPMX19_05775 0.78 +1.3
498,608 + MPMX19_05775 0.78 +0.4
498,608 + MPMX19_05775 0.78 -0.5
498,608 + MPMX19_05775 0.78 +0.8
498,608 + MPMX19_05775 0.78 -0.5
498,608 + MPMX19_05775 0.78 -1.2
498,608 + MPMX19_05775 0.78 +0.8
498,608 + MPMX19_05775 0.78 -1.4
498,609 - MPMX19_05775 0.78 -0.4
498,609 - MPMX19_05775 0.78 +0.8
498,609 - MPMX19_05775 0.78 +0.4
498,609 - MPMX19_05775 0.78 -0.5
498,609 - MPMX19_05775 0.78 -0.7
498,609 - MPMX19_05775 0.78 +0.5
498,609 - MPMX19_05775 0.78 -0.6
498,609 - MPMX19_05775 0.78 -0.3
498,609 - MPMX19_05775 0.78 -1.3
498,609 - MPMX19_05775 0.78 -0.5
498,609 - MPMX19_05775 0.78 -0.9
498,609 - MPMX19_05775 0.78 +0.5
498,609 - MPMX19_05775 0.78 +0.5
498,609 - MPMX19_05775 0.78 -0.4
498,609 - MPMX19_05775 0.78 -0.2
498,609 - MPMX19_05775 0.78 -0.4
498,609 - MPMX19_05775 0.78 -1.1
498,725 + MPMX19_05775 0.85 -1.6
498,725 + MPMX19_05775 0.85 +0.9
498,725 + MPMX19_05775 0.85 +2.4
498,725 + MPMX19_05775 0.85 -2.3
498,725 + MPMX19_05775 0.85 -0.2
498,726 - MPMX19_05775 0.85 -1.4
498,726 - MPMX19_05775 0.85 -0.4
498,726 - MPMX19_05775 0.85 -1.0
499,234 + MPMX19_05776 0.33 -1.2
499,234 + MPMX19_05776 0.33 -1.1
499,234 + MPMX19_05776 0.33 -1.3
499,234 + MPMX19_05776 0.33 +0.4
499,234 + MPMX19_05776 0.33 -0.9
499,234 + MPMX19_05776 0.33 -0.4
499,234 + MPMX19_05776 0.33 -0.6
499,234 + MPMX19_05776 0.33 +0.4
499,234 + MPMX19_05776 0.33 -0.6
499,234 + MPMX19_05776 0.33 +0.8
499,234 + MPMX19_05776 0.33 +0.2
499,234 + MPMX19_05776 0.33 -0.1
499,234 + MPMX19_05776 0.33 +0.2
499,235 - MPMX19_05776 0.33 -0.8
499,235 - MPMX19_05776 0.33 -1.8
499,235 - MPMX19_05776 0.33 -0.2
499,235 - MPMX19_05776 0.33 +0.2
499,235 - MPMX19_05776 0.33 +0.0
499,235 - MPMX19_05776 0.33 +2.4
499,235 - MPMX19_05776 0.33 -0.8
499,235 - MPMX19_05776 0.33 +0.8
499,235 - MPMX19_05776 0.33 -0.3
499,235 - MPMX19_05776 0.33 +0.0
499,235 - MPMX19_05776 0.33 +1.1
499,235 - MPMX19_05776 0.33 +0.5
499,235 - MPMX19_05776 0.33 -1.6
499,235 - MPMX19_05776 0.33 -0.8
499,235 - MPMX19_05776 0.33 -0.6
499,235 - MPMX19_05776 0.33 -2.7
499,605 + MPMX19_05776 0.80 -1.2
499,605 + MPMX19_05776 0.80 +0.2
499,606 - MPMX19_05776 0.80 +0.2
499,702 + +0.9
500,361 + MPMX19_05777 0.40 -0.5
500,361 + MPMX19_05777 0.40 +0.2
500,361 + MPMX19_05777 0.40 +0.3
500,361 + MPMX19_05777 0.40 -0.4
500,362 - MPMX19_05777 0.40 -1.0
500,362 - MPMX19_05777 0.40 -0.8
500,523 + MPMX19_05777 0.50 +0.7
500,523 + MPMX19_05777 0.50 +0.1
500,524 - MPMX19_05777 0.50 +1.3
500,524 - MPMX19_05777 0.50 -1.1
500,524 - MPMX19_05777 0.50 -0.8
500,557 + MPMX19_05777 0.52 -1.0
500,557 + MPMX19_05777 0.52 +0.5
500,557 + MPMX19_05777 0.52 +1.1
500,557 + MPMX19_05777 0.52 -2.0
500,557 + MPMX19_05777 0.52 -0.2
500,557 + MPMX19_05777 0.52 -1.4
500,557 + MPMX19_05777 0.52 -1.8
500,557 + MPMX19_05777 0.52 -1.8
500,557 + MPMX19_05777 0.52 -1.4
500,558 - MPMX19_05777 0.53 -0.2
500,558 - MPMX19_05777 0.53 +0.7
500,558 - MPMX19_05777 0.53 +0.8
500,558 - MPMX19_05777 0.53 +0.2
500,558 - MPMX19_05777 0.53 -0.5
500,558 - MPMX19_05777 0.53 -1.6
500,613 + MPMX19_05777 0.56 +0.8
500,613 + MPMX19_05777 0.56 +0.0
500,613 + MPMX19_05777 0.56 -0.1
500,613 + MPMX19_05777 0.56 -0.6
500,613 + MPMX19_05777 0.56 -0.2
500,613 + MPMX19_05777 0.56 -1.4
500,613 + MPMX19_05777 0.56 -0.2
500,613 + MPMX19_05777 0.56 +0.4
500,614 - MPMX19_05777 0.56 -0.8
500,614 - MPMX19_05777 0.56 -0.5
500,614 - MPMX19_05777 0.56 -0.2
500,614 - MPMX19_05777 0.56 -0.1
500,614 - MPMX19_05777 0.56 +1.0

Or see this region's nucleotide sequence