Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05744

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05742 and MPMX19_05743 overlap by 4 nucleotidesMPMX19_05743 and MPMX19_05744 are separated by 17 nucleotidesMPMX19_05744 and MPMX19_05745 are separated by 196 nucleotides MPMX19_05742: MPMX19_05742 - hypothetical protein, at 458,935 to 459,600 _05742 MPMX19_05743: MPMX19_05743 - Anti-sigma-E factor ChrR, at 459,597 to 460,325 _05743 MPMX19_05744: MPMX19_05744 - hypothetical protein, at 460,343 to 462,427 _05744 MPMX19_05745: MPMX19_05745 - Sensor histidine kinase RcsC, at 462,624 to 466,052 _05745 Position (kb) 460 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.672 kb on + strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.673 kb on - strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.969 kb on + strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 459.970 kb on - strand, within MPMX19_05743at 460.044 kb on - strand, within MPMX19_05743at 460.170 kb on + strand, within MPMX19_05743at 460.171 kb on - strand, within MPMX19_05743at 460.323 kb on + strandat 460.324 kb on - strandat 460.324 kb on - strandat 460.324 kb on - strandat 461.277 kb on - strand, within MPMX19_05744at 461.277 kb on - strand, within MPMX19_05744at 461.277 kb on - strand, within MPMX19_05744at 461.974 kb on + strand, within MPMX19_05744at 461.974 kb on + strand, within MPMX19_05744at 461.974 kb on + strand, within MPMX19_05744at 461.975 kb on - strand, within MPMX19_05744at 461.975 kb on - strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.976 kb on + strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 461.977 kb on - strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.006 kb on + strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.007 kb on - strand, within MPMX19_05744at 462.009 kb on + strand, within MPMX19_05744at 462.009 kb on + strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.010 kb on - strand, within MPMX19_05744at 462.120 kb on + strand, within MPMX19_05744at 462.120 kb on + strand, within MPMX19_05744at 462.121 kb on - strand, within MPMX19_05744at 462.121 kb on - strand, within MPMX19_05744at 462.410 kb on - strandat 462.410 kb on - strandat 462.453 kb on + strandat 462.493 kb on + strandat 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.180 kb on + strand, within MPMX19_05745at 463.181 kb on - strand, within MPMX19_05745at 463.181 kb on - strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.204 kb on + strand, within MPMX19_05745at 463.205 kb on - strand, within MPMX19_05745at 463.205 kb on - strand, within MPMX19_05745

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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459,672 + MPMX19_05743 0.10 +0.2
459,672 + MPMX19_05743 0.10 +0.9
459,672 + MPMX19_05743 0.10 -1.5
459,672 + MPMX19_05743 0.10 -0.2
459,672 + MPMX19_05743 0.10 +0.1
459,672 + MPMX19_05743 0.10 -0.4
459,672 + MPMX19_05743 0.10 +1.0
459,673 - MPMX19_05743 0.10 -1.4
459,673 - MPMX19_05743 0.10 +1.4
459,673 - MPMX19_05743 0.10 -1.2
459,969 + MPMX19_05743 0.51 -0.6
459,969 + MPMX19_05743 0.51 +1.0
459,969 + MPMX19_05743 0.51 -0.4
459,969 + MPMX19_05743 0.51 +0.0
459,969 + MPMX19_05743 0.51 +0.8
459,969 + MPMX19_05743 0.51 +0.4
459,969 + MPMX19_05743 0.51 -0.9
459,969 + MPMX19_05743 0.51 -1.1
459,969 + MPMX19_05743 0.51 -1.1
459,969 + MPMX19_05743 0.51 -0.5
459,969 + MPMX19_05743 0.51 +1.0
459,969 + MPMX19_05743 0.51 +0.3
459,969 + MPMX19_05743 0.51 -0.2
459,969 + MPMX19_05743 0.51 -1.6
459,970 - MPMX19_05743 0.51 +0.1
459,970 - MPMX19_05743 0.51 -1.4
459,970 - MPMX19_05743 0.51 -0.8
459,970 - MPMX19_05743 0.51 +0.4
459,970 - MPMX19_05743 0.51 -1.6
459,970 - MPMX19_05743 0.51 -1.2
459,970 - MPMX19_05743 0.51 -0.4
459,970 - MPMX19_05743 0.51 +1.0
459,970 - MPMX19_05743 0.51 +1.4
459,970 - MPMX19_05743 0.51 +1.5
459,970 - MPMX19_05743 0.51 +0.4
459,970 - MPMX19_05743 0.51 -0.8
459,970 - MPMX19_05743 0.51 -1.9
459,970 - MPMX19_05743 0.51 -0.2
459,970 - MPMX19_05743 0.51 -0.5
459,970 - MPMX19_05743 0.51 +0.1
459,970 - MPMX19_05743 0.51 -1.6
459,970 - MPMX19_05743 0.51 -0.5
459,970 - MPMX19_05743 0.51 -1.9
460,044 - MPMX19_05743 0.61 +0.0
460,170 + MPMX19_05743 0.79 -0.8
460,171 - MPMX19_05743 0.79 -0.4
460,323 + -0.4
460,324 - +0.1
460,324 - -0.7
460,324 - -1.5
461,277 - MPMX19_05744 0.45 -1.0
461,277 - MPMX19_05744 0.45 -0.3
461,277 - MPMX19_05744 0.45 -2.0
461,974 + MPMX19_05744 0.78 +1.2
461,974 + MPMX19_05744 0.78 -0.1
461,974 + MPMX19_05744 0.78 +0.2
461,975 - MPMX19_05744 0.78 -0.9
461,975 - MPMX19_05744 0.78 +0.3
461,976 + MPMX19_05744 0.78 +1.8
461,976 + MPMX19_05744 0.78 +0.0
461,976 + MPMX19_05744 0.78 -1.0
461,976 + MPMX19_05744 0.78 -0.2
461,976 + MPMX19_05744 0.78 -1.2
461,976 + MPMX19_05744 0.78 +0.2
461,976 + MPMX19_05744 0.78 -1.8
461,976 + MPMX19_05744 0.78 +0.5
461,976 + MPMX19_05744 0.78 -0.6
461,976 + MPMX19_05744 0.78 -2.0
461,976 + MPMX19_05744 0.78 -0.2
461,976 + MPMX19_05744 0.78 -2.3
461,976 + MPMX19_05744 0.78 -0.1
461,976 + MPMX19_05744 0.78 -0.5
461,976 + MPMX19_05744 0.78 -0.5
461,977 - MPMX19_05744 0.78 -1.4
461,977 - MPMX19_05744 0.78 -1.9
461,977 - MPMX19_05744 0.78 +0.2
461,977 - MPMX19_05744 0.78 -0.7
461,977 - MPMX19_05744 0.78 +0.4
461,977 - MPMX19_05744 0.78 -0.2
461,977 - MPMX19_05744 0.78 -0.6
461,977 - MPMX19_05744 0.78 -1.4
461,977 - MPMX19_05744 0.78 -0.6
461,977 - MPMX19_05744 0.78 -1.4
461,977 - MPMX19_05744 0.78 -0.8
461,977 - MPMX19_05744 0.78 -0.9
461,977 - MPMX19_05744 0.78 +0.1
461,977 - MPMX19_05744 0.78 +0.6
461,977 - MPMX19_05744 0.78 +0.8
461,977 - MPMX19_05744 0.78 -1.5
461,977 - MPMX19_05744 0.78 +0.8
461,977 - MPMX19_05744 0.78 -2.4
462,006 + MPMX19_05744 0.80 +1.2
462,006 + MPMX19_05744 0.80 -0.9
462,006 + MPMX19_05744 0.80 +0.0
462,006 + MPMX19_05744 0.80 +0.1
462,006 + MPMX19_05744 0.80 -1.2
462,006 + MPMX19_05744 0.80 +1.6
462,006 + MPMX19_05744 0.80 -0.1
462,006 + MPMX19_05744 0.80 +0.6
462,007 - MPMX19_05744 0.80 -0.5
462,007 - MPMX19_05744 0.80 -1.8
462,007 - MPMX19_05744 0.80 -2.4
462,007 - MPMX19_05744 0.80 -1.4
462,007 - MPMX19_05744 0.80 -0.4
462,007 - MPMX19_05744 0.80 -0.3
462,007 - MPMX19_05744 0.80 -1.5
462,007 - MPMX19_05744 0.80 -0.2
462,007 - MPMX19_05744 0.80 -0.2
462,009 + MPMX19_05744 0.80 -1.4
462,009 + MPMX19_05744 0.80 -0.2
462,010 - MPMX19_05744 0.80 +0.1
462,010 - MPMX19_05744 0.80 +0.0
462,010 - MPMX19_05744 0.80 -0.1
462,010 - MPMX19_05744 0.80 +0.4
462,010 - MPMX19_05744 0.80 -1.4
462,120 + MPMX19_05744 0.85 +0.2
462,120 + MPMX19_05744 0.85 -0.1
462,121 - MPMX19_05744 0.85 -1.0
462,121 - MPMX19_05744 0.85 -2.0
462,410 - -2.7
462,410 - -1.2
462,453 + -1.4
462,493 + -0.2
463,180 + MPMX19_05745 0.16 -1.5
463,180 + MPMX19_05745 0.16 -0.2
463,180 + MPMX19_05745 0.16 +0.4
463,180 + MPMX19_05745 0.16 -0.1
463,181 - MPMX19_05745 0.16 -0.0
463,181 - MPMX19_05745 0.16 -0.2
463,204 + MPMX19_05745 0.17 +0.0
463,204 + MPMX19_05745 0.17 -0.2
463,204 + MPMX19_05745 0.17 +0.0
463,205 - MPMX19_05745 0.17 -2.9
463,205 - MPMX19_05745 0.17 +0.2

Or see this region's nucleotide sequence