Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05688 and MPMX19_05689 are separated by 205 nucleotides MPMX19_05689 and MPMX19_05690 are separated by 27 nucleotides MPMX19_05690 and MPMX19_05691 are separated by 122 nucleotides MPMX19_05691 and MPMX19_05692 are separated by 105 nucleotides MPMX19_05692 and MPMX19_05693 are separated by 125 nucleotides
MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088
_05688
MPMX19_05689: MPMX19_05689 - hypothetical protein, at 406,294 to 406,467
_05689
MPMX19_05690: MPMX19_05690 - Protein phosphotransferase ChpT, at 406,495 to 407,178
_05690
MPMX19_05691: MPMX19_05691 - hypothetical protein, at 407,301 to 407,480
_05691
MPMX19_05692: MPMX19_05692 - hypothetical protein, at 407,586 to 407,708
_05692
MPMX19_05693: MPMX19_05693 - Sensor histidine kinase RcsC, at 407,834 to 409,639
_05693
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.113 kb on + strand at 406.113 kb on + strand at 406.113 kb on + strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.114 kb on - strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.182 kb on + strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.183 kb on - strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.209 kb on + strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.210 kb on - strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.220 kb on + strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.221 kb on - strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.465 kb on + strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.466 kb on - strand at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.279 kb on - strand at 407.279 kb on - strand at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.547 kb on + strand at 407.547 kb on + strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.727 kb on - strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.770 kb on - strand at 407.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 406,113 + -0.5 406,113 + -0.2 406,113 + -1.5 406,114 - -1.4 406,114 - +0.1 406,114 - +0.7 406,114 - +0.1 406,114 - -1.4 406,114 - -0.2 406,114 - +0.3 406,114 - -0.5 406,114 - -1.8 406,182 + +0.1 406,182 + -0.6 406,182 + -0.2 406,182 + -0.7 406,182 + -0.1 406,182 + +0.4 406,183 - -1.0 406,183 - -0.4 406,183 - -1.2 406,183 - +0.1 406,183 - -0.4 406,183 - -0.2 406,183 - -1.2 406,209 + -1.4 406,209 + -0.6 406,209 + +0.1 406,209 + -0.5 406,209 + -1.7 406,209 + -1.0 406,210 - -0.2 406,210 - -1.0 406,210 - +0.6 406,210 - -0.9 406,210 - +0.5 406,210 - -0.9 406,210 - -1.0 406,220 + -1.3 406,220 + -0.2 406,220 + -0.7 406,220 + -0.3 406,220 + -0.2 406,220 + -1.5 406,220 + +0.6 406,220 + +0.6 406,220 + -0.7 406,220 + +1.1 406,220 + -0.2 406,220 + -1.9 406,220 + +0.1 406,220 + -0.9 406,220 + +0.1 406,220 + -0.7 406,220 + +0.2 406,220 + -0.0 406,221 - -1.4 406,221 - -1.7 406,221 - -1.4 406,221 - -0.1 406,221 - -2.1 406,221 - +0.1 406,221 - -0.0 406,221 - +0.1 406,221 - -1.8 406,221 - -1.8 406,221 - -1.7 406,221 - -1.4 406,221 - -0.4 406,221 - -0.0 406,221 - +0.7 406,221 - -0.4 406,221 - -0.1 406,465 + -0.1 406,465 + -1.7 406,465 + -0.9 406,465 + -0.4 406,466 - +1.4 406,466 - +0.1 406,466 - -0.5 406,466 - -2.3 406,466 - -1.2 406,466 - -1.1 406,466 - -0.7 406,466 - -1.8 406,466 - -1.8 406,586 + MPMX19_05690 0.13 -1.3 406,586 + MPMX19_05690 0.13 +0.1 406,586 + MPMX19_05690 0.13 +1.4 406,586 + MPMX19_05690 0.13 -1.4 406,586 + MPMX19_05690 0.13 -0.5 406,586 + MPMX19_05690 0.13 -0.4 406,586 + MPMX19_05690 0.13 +0.4 406,587 - MPMX19_05690 0.13 +0.3 406,587 - MPMX19_05690 0.13 -0.5 406,587 - MPMX19_05690 0.13 -0.8 406,587 - MPMX19_05690 0.13 -1.5 406,587 - MPMX19_05690 0.13 -0.2 406,587 - MPMX19_05690 0.13 -0.4 406,587 - MPMX19_05690 0.13 -0.3 406,587 - MPMX19_05690 0.13 -0.4 406,587 - MPMX19_05690 0.13 +0.2 406,587 - MPMX19_05690 0.13 -0.3 406,871 + MPMX19_05690 0.55 +0.6 406,871 + MPMX19_05690 0.55 +0.5 406,871 + MPMX19_05690 0.55 -1.2 406,871 + MPMX19_05690 0.55 +0.2 406,871 + MPMX19_05690 0.55 -0.3 406,871 + MPMX19_05690 0.55 +1.6 406,872 - MPMX19_05690 0.55 +2.1 406,872 - MPMX19_05690 0.55 -0.5 406,872 - MPMX19_05690 0.55 -0.6 406,931 + MPMX19_05690 0.64 -1.1 406,931 + MPMX19_05690 0.64 -0.7 406,931 + MPMX19_05690 0.64 +0.6 406,931 + MPMX19_05690 0.64 +1.2 406,931 + MPMX19_05690 0.64 +0.4 406,931 + MPMX19_05690 0.64 +0.1 406,931 + MPMX19_05690 0.64 -0.4 406,931 + MPMX19_05690 0.64 -0.1 406,932 - MPMX19_05690 0.64 -1.7 406,932 - MPMX19_05690 0.64 -0.4 406,932 - MPMX19_05690 0.64 -0.0 406,932 - MPMX19_05690 0.64 +0.7 406,932 - MPMX19_05690 0.64 +0.5 406,932 - MPMX19_05690 0.64 -0.8 406,932 - MPMX19_05690 0.64 -0.2 406,932 - MPMX19_05690 0.64 +0.2 407,229 + -0.3 407,229 + +2.2 407,229 + -1.0 407,229 + +1.5 407,229 + -0.1 407,229 + -1.1 407,229 + -0.4 407,230 - -0.7 407,230 - -0.5 407,230 - -0.7 407,230 - -0.9 407,230 - -0.2 407,230 - -0.5 407,230 - -2.6 407,230 - -0.3 407,230 - -0.2 407,230 - +0.6 407,231 + -1.2 407,231 + -0.2 407,231 + -0.8 407,231 + -0.9 407,231 + +0.3 407,231 + +1.2 407,231 + -1.0 407,232 - -0.8 407,232 - -0.4 407,232 - -0.4 407,232 - -0.1 407,232 - -0.2 407,232 - -0.5 407,232 - -0.0 407,269 + -1.3 407,269 + -0.5 407,269 + -0.4 407,269 + -1.8 407,269 + -0.2 407,269 + +0.3 407,269 + -2.4 407,270 - -1.4 407,270 - -1.4 407,270 - +0.3 407,270 - -0.0 407,270 - +0.7 407,270 - -0.2 407,270 - -0.0 407,270 - +1.3 407,270 - +0.3 407,270 - -1.0 407,270 - -0.4 407,270 - +0.1 407,270 - +0.1 407,273 + -2.1 407,273 + -0.9 407,273 + -1.4 407,273 + +0.5 407,273 + -1.3 407,273 + +0.4 407,273 + -0.7 407,273 + -0.2 407,273 + -1.9 407,273 + +1.4 407,273 + -0.2 407,273 + -0.5 407,273 + -0.3 407,273 + -1.4 407,273 + -0.9 407,273 + -0.9 407,273 + -0.0 407,273 + +2.0 407,273 + -1.8 407,273 + +0.0 407,273 + +1.8 407,273 + -1.4 407,273 + -1.4 407,273 + -1.4 407,273 + +0.1 407,273 + -1.9 407,273 + -0.3 407,273 + +0.6 407,273 + -0.6 407,273 + -1.2 407,273 + -1.0 407,273 + -1.7 407,273 + -0.7 407,273 + +0.1 407,273 + -0.4 407,273 + -2.0 407,274 - -1.2 407,274 - +0.8 407,274 - -1.2 407,274 - -1.4 407,274 - +1.3 407,274 - +0.7 407,274 - +0.9 407,274 - +0.8 407,274 - -1.3 407,274 - -2.1 407,274 - -1.8 407,274 - -2.3 407,274 - -0.7 407,274 - -1.1 407,274 - +0.9 407,274 - -0.1 407,274 - -0.1 407,274 - +0.5 407,274 - -0.2 407,274 - -0.1 407,274 - -1.0 407,274 - -0.4 407,274 - +0.3 407,274 - +0.2 407,274 - -0.5 407,274 - -1.2 407,274 - +0.4 407,274 - +0.1 407,274 - -1.7 407,274 - -1.6 407,274 - -0.8 407,274 - -1.7 407,274 - -0.5 407,274 - +0.4 407,274 - -1.8 407,274 - -0.7 407,274 - -0.1 407,274 - -0.1 407,274 - -0.0 407,278 + -1.5 407,278 + -2.6 407,278 + -0.4 407,278 + +1.0 407,278 + -1.5 407,278 + +1.5 407,279 - +1.0 407,279 - +0.8 407,371 + MPMX19_05691 0.39 -1.4 407,371 + MPMX19_05691 0.39 -0.8 407,371 + MPMX19_05691 0.39 -1.5 407,371 + MPMX19_05691 0.39 -1.5 407,371 + MPMX19_05691 0.39 -0.7 407,371 + MPMX19_05691 0.39 +0.8 407,371 + MPMX19_05691 0.39 -0.3 407,371 + MPMX19_05691 0.39 +0.2 407,371 + MPMX19_05691 0.39 -0.5 407,371 + MPMX19_05691 0.39 +0.0 407,371 + MPMX19_05691 0.39 -0.1 407,371 + MPMX19_05691 0.39 -0.4 407,371 + MPMX19_05691 0.39 -0.2 407,371 + MPMX19_05691 0.39 +0.2 407,371 + MPMX19_05691 0.39 -1.3 407,371 + MPMX19_05691 0.39 -0.9 407,371 + MPMX19_05691 0.39 +0.1 407,371 + MPMX19_05691 0.39 +0.1 407,371 + MPMX19_05691 0.39 -1.7 407,372 - MPMX19_05691 0.39 +1.0 407,372 - MPMX19_05691 0.39 +0.6 407,372 - MPMX19_05691 0.39 -0.4 407,372 - MPMX19_05691 0.39 -2.3 407,372 - MPMX19_05691 0.39 -0.2 407,372 - MPMX19_05691 0.39 -0.1 407,372 - MPMX19_05691 0.39 -0.2 407,372 - MPMX19_05691 0.39 -0.1 407,372 - MPMX19_05691 0.39 +0.6 407,372 - MPMX19_05691 0.39 +0.6 407,372 - MPMX19_05691 0.39 -0.7 407,372 - MPMX19_05691 0.39 -1.1 407,547 + +0.2 407,547 + -0.9 407,548 - -1.3 407,548 - +0.1 407,548 - +0.6 407,548 - -0.1 407,727 - -1.2 407,769 + -1.4 407,769 + -1.8 407,770 - -0.7 407,770 - -1.0
Or see this region's nucleotide sequence