Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05685 and MPMX19_05686 are separated by 63 nucleotides MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides MPMX19_05687 and MPMX19_05688 overlap by 4 nucleotides
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088
_05688
Position (kb) 402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.375 kb on - strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.616 kb on - strand, within MPMX19_05688 at 403.616 kb on - strand, within MPMX19_05688
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 401,469 + MPMX19_05685 0.29 -0.3 401,469 + MPMX19_05685 0.29 +1.1 401,469 + MPMX19_05685 0.29 +0.5 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 -0.0 401,469 + MPMX19_05685 0.29 -0.5 401,469 + MPMX19_05685 0.29 -2.2 401,469 + MPMX19_05685 0.29 +0.1 401,469 + MPMX19_05685 0.29 -0.5 401,469 + MPMX19_05685 0.29 -0.1 401,470 - MPMX19_05685 0.29 +0.3 401,470 - MPMX19_05685 0.29 -0.2 401,470 - MPMX19_05685 0.29 +0.3 401,470 - MPMX19_05685 0.29 +1.2 401,470 - MPMX19_05685 0.29 +0.1 401,470 - MPMX19_05685 0.29 -1.4 401,470 - MPMX19_05685 0.29 -1.4 401,470 - MPMX19_05685 0.29 +0.0 401,470 - MPMX19_05685 0.29 +0.6 401,470 - MPMX19_05685 0.29 +0.2 401,470 - MPMX19_05685 0.29 +1.8 401,470 - MPMX19_05685 0.29 -0.7 401,470 - MPMX19_05685 0.29 -2.9 401,470 - MPMX19_05685 0.29 -0.0 401,470 - MPMX19_05685 0.29 +0.4 401,470 - MPMX19_05685 0.29 -0.0 401,470 - MPMX19_05685 0.29 -1.5 401,470 - MPMX19_05685 0.29 -0.8 401,470 - MPMX19_05685 0.29 +0.2 401,492 + MPMX19_05685 0.31 -1.1 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 +0.2 401,492 + MPMX19_05685 0.31 +0.9 401,492 + MPMX19_05685 0.31 -0.6 401,492 + MPMX19_05685 0.31 -0.2 401,492 + MPMX19_05685 0.31 +2.2 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 -0.7 401,492 + MPMX19_05685 0.31 +0.4 401,492 + MPMX19_05685 0.31 -1.7 401,492 + MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.2 401,493 - MPMX19_05685 0.31 +1.0 401,493 - MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.6 401,493 - MPMX19_05685 0.31 -1.1 401,493 - MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.1 401,493 - MPMX19_05685 0.31 +0.4 401,493 - MPMX19_05685 0.31 -1.8 401,493 - MPMX19_05685 0.31 +1.4 401,493 - MPMX19_05685 0.31 +0.3 401,493 - MPMX19_05685 0.31 -1.0 401,493 - MPMX19_05685 0.31 -2.7 401,493 - MPMX19_05685 0.31 -2.5 401,493 - MPMX19_05685 0.31 -1.7 401,493 - MPMX19_05685 0.31 -0.4 401,930 + MPMX19_05685 0.69 -1.0 401,930 + MPMX19_05685 0.69 +1.0 401,930 + MPMX19_05685 0.69 -0.1 401,931 - MPMX19_05685 0.69 -1.0 401,931 - MPMX19_05685 0.69 +0.7 401,931 - MPMX19_05685 0.69 -1.0 401,931 - MPMX19_05685 0.69 +0.4 401,931 - MPMX19_05685 0.69 -0.8 401,931 - MPMX19_05685 0.69 -0.0 402,294 + +0.7 402,294 + -0.3 402,294 + +0.4 402,294 + -0.1 402,294 + -0.8 402,294 + +0.4 402,295 - +0.3 402,295 - -0.0 402,295 - +1.4 402,422 + MPMX19_05686 0.17 +0.1 402,422 + MPMX19_05686 0.17 -1.2 402,422 + MPMX19_05686 0.17 -0.2 402,422 + MPMX19_05686 0.17 -2.2 402,422 + MPMX19_05686 0.17 -1.5 402,422 + MPMX19_05686 0.17 -1.1 402,423 - MPMX19_05686 0.18 -0.0 402,423 - MPMX19_05686 0.18 -0.0 402,423 - MPMX19_05686 0.18 +0.4 402,423 - MPMX19_05686 0.18 -0.7 402,423 - MPMX19_05686 0.18 -2.4 402,423 - MPMX19_05686 0.18 -0.6 402,888 + MPMX19_05687 0.15 +0.8 402,889 - MPMX19_05687 0.15 -1.2 402,889 - MPMX19_05687 0.15 -1.0 402,889 - MPMX19_05687 0.15 +0.2 402,890 + MPMX19_05687 0.15 +1.1 402,890 + MPMX19_05687 0.15 -0.5 402,890 + MPMX19_05687 0.15 -2.1 402,890 + MPMX19_05687 0.15 +0.2 402,891 - MPMX19_05687 0.15 -0.3 403,001 + MPMX19_05687 0.37 +0.0 403,001 + MPMX19_05687 0.37 -0.9 403,001 + MPMX19_05687 0.37 +0.5 403,001 + MPMX19_05687 0.37 +0.1 403,001 + MPMX19_05687 0.37 -0.8 403,001 + MPMX19_05687 0.37 +0.1 403,002 - MPMX19_05687 0.38 -0.9 403,002 - MPMX19_05687 0.38 +0.1 403,002 - MPMX19_05687 0.38 -0.1 403,002 - MPMX19_05687 0.38 -0.4 403,002 - MPMX19_05687 0.38 -0.6 403,002 - MPMX19_05687 0.38 +1.0 403,375 - +0.7 403,387 + +0.5 403,387 + +1.1 403,387 + -0.1 403,387 + +0.5 403,387 + +0.4 403,387 + +0.8 403,387 + -0.1 403,387 + +0.2 403,387 + +1.8 403,387 + -1.0 403,387 + -1.5 403,387 + +1.6 403,387 + +0.5 403,387 + -0.8 403,387 + -1.8 403,387 + -0.4 403,387 + -0.5 403,387 + -0.4 403,387 + -0.2 403,387 + +1.7 403,388 - -2.4 403,388 - -0.4 403,388 - -2.8 403,388 - +1.0 403,388 - +0.3 403,388 - +0.8 403,388 - -0.3 403,388 - -0.5 403,388 - +0.2 403,388 - +0.5 403,388 - -1.2 403,388 - -1.5 403,388 - +0.4 403,388 - -0.2 403,388 - +1.2 403,388 - -1.1 403,388 - -1.0 403,616 - MPMX19_05688 0.11 -1.1 403,616 - MPMX19_05688 0.11 +1.4
Or see this region's nucleotide sequence