Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05683 and MPMX19_05684 are separated by 71 nucleotides MPMX19_05684 and MPMX19_05685 overlap by 4 nucleotides MPMX19_05685 and MPMX19_05686 are separated by 63 nucleotides MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides
MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220
_05683
MPMX19_05684: MPMX19_05684 - Chemotaxis protein methyltransferase 1, at 400,292 to 401,131
_05684
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.293 kb on + strand at 400.293 kb on + strand at 400.293 kb on + strand at 400.294 kb on - strand at 400.335 kb on + strand at 400.335 kb on + strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.469 kb on + strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.470 kb on - strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.492 kb on + strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.493 kb on - strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 400,137 + MPMX19_05683 0.63 +0.8 400,137 + MPMX19_05683 0.63 -1.4 400,137 + MPMX19_05683 0.63 -1.8 400,137 + MPMX19_05683 0.63 -1.0 400,137 + MPMX19_05683 0.63 -0.2 400,137 + MPMX19_05683 0.63 +1.0 400,137 + MPMX19_05683 0.63 -0.9 400,137 + MPMX19_05683 0.63 +0.3 400,138 - MPMX19_05683 0.63 -2.1 400,138 - MPMX19_05683 0.63 -1.1 400,138 - MPMX19_05683 0.63 -1.2 400,138 - MPMX19_05683 0.63 +0.7 400,138 - MPMX19_05683 0.63 -0.7 400,138 - MPMX19_05683 0.63 -0.1 400,293 + +0.8 400,293 + -1.0 400,293 + +0.2 400,294 - -1.2 400,335 + +0.2 400,335 + -0.7 400,336 - +0.3 400,336 - +0.9 400,336 - -0.2 400,336 - -1.4 400,369 + +0.0 400,369 + +2.2 400,369 + -1.0 400,369 + -1.0 400,369 + +0.5 400,369 + -0.2 400,370 - -3.1 400,370 - +0.6 400,370 - -0.1 400,370 - -1.7 400,407 + MPMX19_05684 0.14 -2.2 400,407 + MPMX19_05684 0.14 +0.5 400,407 + MPMX19_05684 0.14 -1.5 400,407 + MPMX19_05684 0.14 -1.3 400,407 + MPMX19_05684 0.14 -0.7 400,407 + MPMX19_05684 0.14 +0.7 400,407 + MPMX19_05684 0.14 -0.1 400,407 + MPMX19_05684 0.14 +0.3 400,408 - MPMX19_05684 0.14 +0.4 400,408 - MPMX19_05684 0.14 -0.0 400,408 - MPMX19_05684 0.14 +0.6 400,408 - MPMX19_05684 0.14 +0.2 400,479 + MPMX19_05684 0.22 -0.9 400,479 + MPMX19_05684 0.22 -1.4 400,479 + MPMX19_05684 0.22 -0.1 400,479 + MPMX19_05684 0.22 -2.4 400,479 + MPMX19_05684 0.22 -1.3 400,479 + MPMX19_05684 0.22 -0.8 400,479 + MPMX19_05684 0.22 -1.0 400,480 - MPMX19_05684 0.22 -1.2 400,480 - MPMX19_05684 0.22 -0.2 400,480 - MPMX19_05684 0.22 -1.7 400,480 - MPMX19_05684 0.22 -1.7 400,480 - MPMX19_05684 0.22 -0.3 400,668 + MPMX19_05684 0.45 -0.0 400,668 + MPMX19_05684 0.45 -1.2 400,668 + MPMX19_05684 0.45 -0.4 400,668 + MPMX19_05684 0.45 +0.5 400,668 + MPMX19_05684 0.45 -0.5 400,668 + MPMX19_05684 0.45 -0.4 400,668 + MPMX19_05684 0.45 -0.1 400,668 + MPMX19_05684 0.45 -0.2 400,669 - MPMX19_05684 0.45 -2.1 400,669 - MPMX19_05684 0.45 +0.0 400,669 - MPMX19_05684 0.45 -0.6 400,669 - MPMX19_05684 0.45 +0.1 400,669 - MPMX19_05684 0.45 +0.9 400,669 - MPMX19_05684 0.45 -0.7 400,782 + MPMX19_05684 0.58 -0.6 400,782 + MPMX19_05684 0.58 -0.2 400,782 + MPMX19_05684 0.58 -0.2 400,782 + MPMX19_05684 0.58 -0.7 400,782 + MPMX19_05684 0.58 +0.1 400,782 + MPMX19_05684 0.58 +0.2 400,783 - MPMX19_05684 0.58 -0.6 400,783 - MPMX19_05684 0.58 +0.6 400,783 - MPMX19_05684 0.58 -1.4 400,783 - MPMX19_05684 0.58 -0.1 400,783 - MPMX19_05684 0.58 +0.5 400,783 - MPMX19_05684 0.58 -0.5 401,052 + +0.7 401,052 + -1.7 401,052 + +0.5 401,052 + +0.1 401,052 + +0.5 401,052 + +1.1 401,052 + -0.9 401,052 + -0.7 401,052 + -0.8 401,052 + -0.2 401,052 + -1.5 401,052 + +0.2 401,052 + -0.5 401,052 + -0.8 401,052 + -0.5 401,052 + -1.0 401,052 + +1.1 401,052 + +1.2 401,053 - -2.0 401,053 - -0.5 401,053 - -0.2 401,053 - +1.1 401,053 - -2.2 401,053 - -0.8 401,053 - -1.5 401,053 - -0.9 401,469 + MPMX19_05685 0.29 -0.3 401,469 + MPMX19_05685 0.29 +1.1 401,469 + MPMX19_05685 0.29 +0.5 401,469 + MPMX19_05685 0.29 -0.7 401,469 + MPMX19_05685 0.29 -0.0 401,469 + MPMX19_05685 0.29 -0.5 401,469 + MPMX19_05685 0.29 -2.2 401,469 + MPMX19_05685 0.29 +0.1 401,469 + MPMX19_05685 0.29 -0.5 401,469 + MPMX19_05685 0.29 -0.1 401,470 - MPMX19_05685 0.29 +0.3 401,470 - MPMX19_05685 0.29 -0.2 401,470 - MPMX19_05685 0.29 +0.3 401,470 - MPMX19_05685 0.29 +1.2 401,470 - MPMX19_05685 0.29 +0.1 401,470 - MPMX19_05685 0.29 -1.4 401,470 - MPMX19_05685 0.29 -1.4 401,470 - MPMX19_05685 0.29 +0.0 401,470 - MPMX19_05685 0.29 +0.6 401,470 - MPMX19_05685 0.29 +0.2 401,470 - MPMX19_05685 0.29 +1.8 401,470 - MPMX19_05685 0.29 -0.7 401,470 - MPMX19_05685 0.29 -2.9 401,470 - MPMX19_05685 0.29 -0.0 401,470 - MPMX19_05685 0.29 +0.4 401,470 - MPMX19_05685 0.29 -0.0 401,470 - MPMX19_05685 0.29 -1.5 401,470 - MPMX19_05685 0.29 -0.8 401,470 - MPMX19_05685 0.29 +0.2 401,492 + MPMX19_05685 0.31 -1.1 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 +0.2 401,492 + MPMX19_05685 0.31 +0.9 401,492 + MPMX19_05685 0.31 -0.6 401,492 + MPMX19_05685 0.31 -0.2 401,492 + MPMX19_05685 0.31 +2.2 401,492 + MPMX19_05685 0.31 +0.3 401,492 + MPMX19_05685 0.31 -0.7 401,492 + MPMX19_05685 0.31 +0.4 401,492 + MPMX19_05685 0.31 -1.7 401,492 + MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.2 401,493 - MPMX19_05685 0.31 +1.0 401,493 - MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.6 401,493 - MPMX19_05685 0.31 -1.1 401,493 - MPMX19_05685 0.31 -0.2 401,493 - MPMX19_05685 0.31 +0.1 401,493 - MPMX19_05685 0.31 +0.4 401,493 - MPMX19_05685 0.31 -1.8 401,493 - MPMX19_05685 0.31 +1.4 401,493 - MPMX19_05685 0.31 +0.3 401,493 - MPMX19_05685 0.31 -1.0 401,493 - MPMX19_05685 0.31 -2.7 401,493 - MPMX19_05685 0.31 -2.5 401,493 - MPMX19_05685 0.31 -1.7 401,493 - MPMX19_05685 0.31 -0.4 401,930 + MPMX19_05685 0.69 -1.0 401,930 + MPMX19_05685 0.69 +1.0 401,930 + MPMX19_05685 0.69 -0.1 401,931 - MPMX19_05685 0.69 -1.0 401,931 - MPMX19_05685 0.69 +0.7 401,931 - MPMX19_05685 0.69 -1.0 401,931 - MPMX19_05685 0.69 +0.4 401,931 - MPMX19_05685 0.69 -0.8 401,931 - MPMX19_05685 0.69 -0.0 402,294 + +0.7 402,294 + -0.3 402,294 + +0.4 402,294 + -0.1 402,294 + -0.8 402,294 + +0.4 402,295 - +0.3 402,295 - -0.0 402,295 - +1.4 402,422 + MPMX19_05686 0.17 +0.1 402,422 + MPMX19_05686 0.17 -1.2 402,422 + MPMX19_05686 0.17 -0.2 402,422 + MPMX19_05686 0.17 -2.2 402,422 + MPMX19_05686 0.17 -1.5 402,422 + MPMX19_05686 0.17 -1.1 402,423 - MPMX19_05686 0.18 -0.0 402,423 - MPMX19_05686 0.18 -0.0 402,423 - MPMX19_05686 0.18 +0.4 402,423 - MPMX19_05686 0.18 -0.7 402,423 - MPMX19_05686 0.18 -2.4 402,423 - MPMX19_05686 0.18 -0.6 402,888 + MPMX19_05687 0.15 +0.8 402,889 - MPMX19_05687 0.15 -1.2 402,889 - MPMX19_05687 0.15 -1.0 402,889 - MPMX19_05687 0.15 +0.2 402,890 + MPMX19_05687 0.15 +1.1 402,890 + MPMX19_05687 0.15 -0.5 402,890 + MPMX19_05687 0.15 -2.1 402,890 + MPMX19_05687 0.15 +0.2 402,891 - MPMX19_05687 0.15 -0.3 403,001 + MPMX19_05687 0.37 +0.0 403,001 + MPMX19_05687 0.37 -0.9 403,001 + MPMX19_05687 0.37 +0.5 403,001 + MPMX19_05687 0.37 +0.1 403,001 + MPMX19_05687 0.37 -0.8 403,001 + MPMX19_05687 0.37 +0.1 403,002 - MPMX19_05687 0.38 -0.9 403,002 - MPMX19_05687 0.38 +0.1 403,002 - MPMX19_05687 0.38 -0.1 403,002 - MPMX19_05687 0.38 -0.4 403,002 - MPMX19_05687 0.38 -0.6 403,002 - MPMX19_05687 0.38 +1.0
Or see this region's nucleotide sequence