Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05676

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05675 and MPMX19_05676 are separated by 146 nucleotidesMPMX19_05676 and MPMX19_05677 are separated by 130 nucleotidesMPMX19_05677 and MPMX19_05678 are separated by 59 nucleotides MPMX19_05675: MPMX19_05675 - HTH-type transcriptional regulator YjiE, at 394,227 to 395,219 _05675 MPMX19_05676: MPMX19_05676 - hypothetical protein, at 395,366 to 395,596 _05676 MPMX19_05677: MPMX19_05677 - hypothetical protein, at 395,727 to 396,317 _05677 MPMX19_05678: MPMX19_05678 - hypothetical protein, at 396,377 to 396,811 _05678 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 394.824 kb on + strand, within MPMX19_05675at 394.824 kb on + strand, within MPMX19_05675at 394.824 kb on + strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 394.825 kb on - strand, within MPMX19_05675at 395.322 kb on + strandat 395.322 kb on + strandat 395.322 kb on + strandat 395.322 kb on + strandat 395.322 kb on + strandat 395.323 kb on - strandat 395.399 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.414 kb on + strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.415 kb on - strand, within MPMX19_05676at 395.601 kb on + strandat 395.630 kb on + strandat 395.630 kb on + strandat 395.631 kb on - strandat 395.631 kb on - strandat 395.896 kb on - strand, within MPMX19_05677at 395.896 kb on - strand, within MPMX19_05677at 395.896 kb on - strand, within MPMX19_05677at 395.925 kb on + strand, within MPMX19_05677at 395.925 kb on + strand, within MPMX19_05677at 395.925 kb on + strand, within MPMX19_05677at 395.926 kb on - strand, within MPMX19_05677at 395.926 kb on - strand, within MPMX19_05677at 395.926 kb on - strand, within MPMX19_05677at 395.926 kb on - strand, within MPMX19_05677at 395.991 kb on + strand, within MPMX19_05677at 396.102 kb on + strand, within MPMX19_05677at 396.103 kb on - strand, within MPMX19_05677at 396.103 kb on - strand, within MPMX19_05677at 396.265 kb on + strandat 396.265 kb on + strandat 396.266 kb on - strandat 396.266 kb on - strandat 396.266 kb on - strandat 396.266 kb on - strandat 396.273 kb on + strandat 396.273 kb on + strandat 396.273 kb on + strandat 396.273 kb on + strandat 396.273 kb on + strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.274 kb on - strandat 396.371 kb on + strandat 396.372 kb on - strandat 396.372 kb on - strandat 396.372 kb on - strandat 396.372 kb on - strandat 396.372 kb on - strandat 396.510 kb on + strand, within MPMX19_05678at 396.510 kb on + strand, within MPMX19_05678at 396.511 kb on - strand, within MPMX19_05678

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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394,824 + MPMX19_05675 0.60 -0.7
394,824 + MPMX19_05675 0.60 -0.5
394,824 + MPMX19_05675 0.60 -0.5
394,825 - MPMX19_05675 0.60 -3.2
394,825 - MPMX19_05675 0.60 -0.4
394,825 - MPMX19_05675 0.60 +0.2
394,825 - MPMX19_05675 0.60 -0.6
394,825 - MPMX19_05675 0.60 -0.5
394,825 - MPMX19_05675 0.60 -1.8
394,825 - MPMX19_05675 0.60 +1.8
394,825 - MPMX19_05675 0.60 -0.1
395,322 + +0.3
395,322 + -1.1
395,322 + +0.5
395,322 + -0.7
395,322 + -0.7
395,323 - +0.5
395,399 + MPMX19_05676 0.14 +1.0
395,414 + MPMX19_05676 0.21 -1.0
395,414 + MPMX19_05676 0.21 -0.5
395,414 + MPMX19_05676 0.21 -0.0
395,414 + MPMX19_05676 0.21 -1.7
395,414 + MPMX19_05676 0.21 -1.2
395,414 + MPMX19_05676 0.21 +0.6
395,414 + MPMX19_05676 0.21 -1.4
395,414 + MPMX19_05676 0.21 +0.8
395,414 + MPMX19_05676 0.21 +1.2
395,414 + MPMX19_05676 0.21 -1.0
395,414 + MPMX19_05676 0.21 -0.2
395,414 + MPMX19_05676 0.21 -0.5
395,414 + MPMX19_05676 0.21 +0.1
395,414 + MPMX19_05676 0.21 +0.6
395,414 + MPMX19_05676 0.21 +1.5
395,414 + MPMX19_05676 0.21 +0.4
395,414 + MPMX19_05676 0.21 -0.7
395,414 + MPMX19_05676 0.21 +0.6
395,414 + MPMX19_05676 0.21 +0.4
395,414 + MPMX19_05676 0.21 -0.7
395,414 + MPMX19_05676 0.21 -1.0
395,414 + MPMX19_05676 0.21 -1.8
395,414 + MPMX19_05676 0.21 -2.4
395,414 + MPMX19_05676 0.21 +0.1
395,414 + MPMX19_05676 0.21 -0.1
395,414 + MPMX19_05676 0.21 -1.9
395,414 + MPMX19_05676 0.21 +0.6
395,414 + MPMX19_05676 0.21 +0.7
395,414 + MPMX19_05676 0.21 +0.8
395,414 + MPMX19_05676 0.21 -1.5
395,414 + MPMX19_05676 0.21 -0.5
395,414 + MPMX19_05676 0.21 -1.9
395,414 + MPMX19_05676 0.21 +0.6
395,414 + MPMX19_05676 0.21 -0.3
395,414 + MPMX19_05676 0.21 -0.2
395,414 + MPMX19_05676 0.21 -1.3
395,414 + MPMX19_05676 0.21 +0.1
395,414 + MPMX19_05676 0.21 -1.7
395,414 + MPMX19_05676 0.21 -2.8
395,415 - MPMX19_05676 0.21 -0.8
395,415 - MPMX19_05676 0.21 -0.4
395,415 - MPMX19_05676 0.21 -0.3
395,415 - MPMX19_05676 0.21 +0.5
395,415 - MPMX19_05676 0.21 -0.8
395,415 - MPMX19_05676 0.21 -0.5
395,415 - MPMX19_05676 0.21 -0.3
395,415 - MPMX19_05676 0.21 -0.4
395,415 - MPMX19_05676 0.21 +0.1
395,415 - MPMX19_05676 0.21 +0.6
395,415 - MPMX19_05676 0.21 +0.4
395,415 - MPMX19_05676 0.21 +0.6
395,415 - MPMX19_05676 0.21 -1.7
395,415 - MPMX19_05676 0.21 -0.7
395,415 - MPMX19_05676 0.21 +1.4
395,415 - MPMX19_05676 0.21 +1.1
395,415 - MPMX19_05676 0.21 -0.4
395,415 - MPMX19_05676 0.21 -1.4
395,415 - MPMX19_05676 0.21 -1.0
395,415 - MPMX19_05676 0.21 -0.3
395,415 - MPMX19_05676 0.21 -0.8
395,415 - MPMX19_05676 0.21 -1.4
395,415 - MPMX19_05676 0.21 +0.1
395,415 - MPMX19_05676 0.21 -0.1
395,415 - MPMX19_05676 0.21 +0.3
395,415 - MPMX19_05676 0.21 -2.4
395,415 - MPMX19_05676 0.21 -1.0
395,415 - MPMX19_05676 0.21 +1.5
395,415 - MPMX19_05676 0.21 +1.1
395,415 - MPMX19_05676 0.21 +0.5
395,415 - MPMX19_05676 0.21 -0.5
395,415 - MPMX19_05676 0.21 +0.2
395,415 - MPMX19_05676 0.21 +0.5
395,415 - MPMX19_05676 0.21 -0.3
395,415 - MPMX19_05676 0.21 -0.0
395,415 - MPMX19_05676 0.21 -0.0
395,415 - MPMX19_05676 0.21 -1.2
395,601 + -0.1
395,630 + -1.8
395,630 + +1.1
395,631 - -3.0
395,631 - -0.7
395,896 - MPMX19_05677 0.29 -0.7
395,896 - MPMX19_05677 0.29 -2.3
395,896 - MPMX19_05677 0.29 -0.3
395,925 + MPMX19_05677 0.34 -0.8
395,925 + MPMX19_05677 0.34 -1.0
395,925 + MPMX19_05677 0.34 -0.7
395,926 - MPMX19_05677 0.34 +0.8
395,926 - MPMX19_05677 0.34 -1.8
395,926 - MPMX19_05677 0.34 -0.5
395,926 - MPMX19_05677 0.34 -0.7
395,991 + MPMX19_05677 0.45 +0.2
396,102 + MPMX19_05677 0.63 -0.9
396,103 - MPMX19_05677 0.64 -0.8
396,103 - MPMX19_05677 0.64 -1.0
396,265 + -0.8
396,265 + +0.0
396,266 - -0.9
396,266 - +1.0
396,266 - -0.8
396,266 - -0.1
396,273 + -1.2
396,273 + -1.4
396,273 + +0.2
396,273 + -1.4
396,273 + -1.0
396,274 - -0.3
396,274 - -0.9
396,274 - -1.7
396,274 - +0.2
396,274 - -1.5
396,274 - +0.6
396,274 - +1.0
396,274 - -0.5
396,274 - -1.9
396,274 - -0.3
396,274 - +0.0
396,274 - +0.4
396,274 - +1.1
396,274 - +0.4
396,371 + +0.1
396,372 - +0.0
396,372 - -0.7
396,372 - +0.2
396,372 - -0.9
396,372 - +0.5
396,510 + MPMX19_05678 0.31 -0.2
396,510 + MPMX19_05678 0.31 +0.8
396,511 - MPMX19_05678 0.31 -1.0

Or see this region's nucleotide sequence