Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05668 and MPMX19_05669 are separated by 128 nucleotides MPMX19_05669 and MPMX19_05670 are separated by 170 nucleotides MPMX19_05670 and MPMX19_05671 are separated by 181 nucleotides
MPMX19_05668: MPMX19_05668 - Chaperone protein TorD, at 386,907 to 387,515
_05668
MPMX19_05669: MPMX19_05669 - hypothetical protein, at 387,644 to 387,850
_05669
MPMX19_05670: MPMX19_05670 - Quinolinate synthase A, at 388,021 to 389,031
_05670
MPMX19_05671: MPMX19_05671 - L-aspartate oxidase, at 389,213 to 390,862
_05671
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.250 kb on + strand, within MPMX19_05668 at 387.250 kb on + strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.463 kb on + strand at 387.464 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.873 kb on + strand at 387.873 kb on + strand at 387.874 kb on - strand at 387.874 kb on - strand at 387.964 kb on - strand at 387.980 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.573 kb on + strand, within MPMX19_05670 at 388.574 kb on - strand, within MPMX19_05670 at 388.574 kb on - strand, within MPMX19_05670 at 388.574 kb on - strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.585 kb on + strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 388.586 kb on - strand, within MPMX19_05670 at 389.212 kb on + strand at 389.212 kb on + strand at 389.212 kb on + strand at 389.212 kb on + strand at 389.212 kb on + strand at 389.213 kb on - strand at 389.213 kb on - strand at 389.213 kb on - strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.231 kb on + strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.232 kb on - strand at 389.363 kb on + strand at 389.363 kb on + strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.364 kb on - strand at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.454 kb on + strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671 at 389.455 kb on - strand, within MPMX19_05671
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 387,250 + MPMX19_05668 0.56 -2.5 387,250 + MPMX19_05668 0.56 -1.7 387,251 - MPMX19_05668 0.56 +0.2 387,251 - MPMX19_05668 0.56 +0.1 387,251 - MPMX19_05668 0.56 -1.0 387,253 + MPMX19_05668 0.57 +1.1 387,253 + MPMX19_05668 0.57 -0.1 387,253 + MPMX19_05668 0.57 -0.8 387,253 + MPMX19_05668 0.57 -0.7 387,253 + MPMX19_05668 0.57 +0.4 387,253 + MPMX19_05668 0.57 -0.2 387,253 + MPMX19_05668 0.57 -1.0 387,253 + MPMX19_05668 0.57 -0.5 387,253 + MPMX19_05668 0.57 +0.5 387,253 + MPMX19_05668 0.57 -3.3 387,253 + MPMX19_05668 0.57 -2.0 387,254 - MPMX19_05668 0.57 -1.4 387,254 - MPMX19_05668 0.57 -1.4 387,254 - MPMX19_05668 0.57 -0.0 387,254 - MPMX19_05668 0.57 -1.7 387,254 - MPMX19_05668 0.57 -1.9 387,254 - MPMX19_05668 0.57 +0.3 387,254 - MPMX19_05668 0.57 -0.8 387,254 - MPMX19_05668 0.57 -1.5 387,262 + MPMX19_05668 0.58 +0.1 387,262 + MPMX19_05668 0.58 +0.6 387,262 + MPMX19_05668 0.58 -0.2 387,262 + MPMX19_05668 0.58 -1.5 387,262 + MPMX19_05668 0.58 +0.8 387,262 + MPMX19_05668 0.58 -1.4 387,262 + MPMX19_05668 0.58 +1.1 387,262 + MPMX19_05668 0.58 -0.8 387,262 + MPMX19_05668 0.58 -0.1 387,262 + MPMX19_05668 0.58 -2.0 387,262 + MPMX19_05668 0.58 +1.1 387,262 + MPMX19_05668 0.58 +0.2 387,262 + MPMX19_05668 0.58 +0.3 387,262 + MPMX19_05668 0.58 +0.2 387,263 - MPMX19_05668 0.58 -1.0 387,263 - MPMX19_05668 0.58 +1.8 387,263 - MPMX19_05668 0.58 +0.0 387,263 - MPMX19_05668 0.58 +0.8 387,263 - MPMX19_05668 0.58 -1.7 387,263 - MPMX19_05668 0.58 -0.7 387,263 - MPMX19_05668 0.58 -2.2 387,263 - MPMX19_05668 0.58 +0.9 387,263 - MPMX19_05668 0.58 -0.3 387,263 - MPMX19_05668 0.58 -1.0 387,263 - MPMX19_05668 0.58 -0.5 387,263 - MPMX19_05668 0.58 -0.3 387,263 - MPMX19_05668 0.58 -1.2 387,263 - MPMX19_05668 0.58 -0.9 387,463 + +0.4 387,464 - +0.3 387,562 - -0.5 387,562 - -1.2 387,562 - -0.3 387,873 + -2.2 387,873 + +0.2 387,874 - -0.4 387,874 - -0.5 387,964 - +1.5 387,980 + -0.1 388,045 + +1.1 388,045 + -1.9 388,045 + -0.7 388,045 + +1.1 388,045 + +1.8 388,046 - +1.1 388,046 - -0.4 388,046 - -0.0 388,046 - +0.3 388,046 - +0.0 388,046 - -0.1 388,046 - +1.1 388,046 - +1.0 388,046 - +0.5 388,046 - -0.2 388,046 - -1.1 388,195 + MPMX19_05670 0.17 +0.1 388,195 + MPMX19_05670 0.17 -0.5 388,195 + MPMX19_05670 0.17 +0.8 388,195 + MPMX19_05670 0.17 +0.5 388,195 + MPMX19_05670 0.17 +0.2 388,195 + MPMX19_05670 0.17 -2.2 388,195 + MPMX19_05670 0.17 -1.4 388,196 - MPMX19_05670 0.17 -0.2 388,196 - MPMX19_05670 0.17 -0.3 388,196 - MPMX19_05670 0.17 +0.8 388,196 - MPMX19_05670 0.17 -0.7 388,196 - MPMX19_05670 0.17 +0.3 388,196 - MPMX19_05670 0.17 -1.0 388,456 + MPMX19_05670 0.43 -0.2 388,456 + MPMX19_05670 0.43 +0.5 388,456 + MPMX19_05670 0.43 -0.8 388,456 + MPMX19_05670 0.43 -0.5 388,456 + MPMX19_05670 0.43 -0.3 388,456 + MPMX19_05670 0.43 -1.1 388,456 + MPMX19_05670 0.43 +0.1 388,456 + MPMX19_05670 0.43 -0.2 388,457 - MPMX19_05670 0.43 +1.0 388,457 - MPMX19_05670 0.43 -1.3 388,457 - MPMX19_05670 0.43 -0.8 388,457 - MPMX19_05670 0.43 +0.8 388,457 - MPMX19_05670 0.43 +0.6 388,457 - MPMX19_05670 0.43 -0.5 388,457 - MPMX19_05670 0.43 -0.4 388,457 - MPMX19_05670 0.43 +1.2 388,457 - MPMX19_05670 0.43 -0.4 388,457 - MPMX19_05670 0.43 -0.1 388,457 - MPMX19_05670 0.43 -2.5 388,457 - MPMX19_05670 0.43 -0.7 388,457 - MPMX19_05670 0.43 -1.8 388,457 - MPMX19_05670 0.43 -0.3 388,457 - MPMX19_05670 0.43 -1.7 388,573 + MPMX19_05670 0.55 +0.2 388,574 - MPMX19_05670 0.55 -0.9 388,574 - MPMX19_05670 0.55 -0.1 388,574 - MPMX19_05670 0.55 -0.2 388,585 + MPMX19_05670 0.56 -1.4 388,585 + MPMX19_05670 0.56 -1.4 388,585 + MPMX19_05670 0.56 +0.8 388,585 + MPMX19_05670 0.56 -1.4 388,585 + MPMX19_05670 0.56 -0.2 388,585 + MPMX19_05670 0.56 +0.6 388,585 + MPMX19_05670 0.56 -1.4 388,585 + MPMX19_05670 0.56 +0.5 388,585 + MPMX19_05670 0.56 -0.4 388,585 + MPMX19_05670 0.56 -0.8 388,585 + MPMX19_05670 0.56 -1.4 388,585 + MPMX19_05670 0.56 -2.3 388,585 + MPMX19_05670 0.56 -0.8 388,585 + MPMX19_05670 0.56 -1.2 388,585 + MPMX19_05670 0.56 +0.8 388,585 + MPMX19_05670 0.56 -0.0 388,585 + MPMX19_05670 0.56 -2.2 388,585 + MPMX19_05670 0.56 -0.7 388,585 + MPMX19_05670 0.56 -0.1 388,586 - MPMX19_05670 0.56 +0.2 388,586 - MPMX19_05670 0.56 +1.1 388,586 - MPMX19_05670 0.56 -0.1 388,586 - MPMX19_05670 0.56 -0.7 388,586 - MPMX19_05670 0.56 -0.4 388,586 - MPMX19_05670 0.56 +0.4 388,586 - MPMX19_05670 0.56 +0.2 388,586 - MPMX19_05670 0.56 +0.2 388,586 - MPMX19_05670 0.56 -0.9 388,586 - MPMX19_05670 0.56 +0.5 388,586 - MPMX19_05670 0.56 -0.6 388,586 - MPMX19_05670 0.56 -1.0 388,586 - MPMX19_05670 0.56 +0.4 388,586 - MPMX19_05670 0.56 -0.4 388,586 - MPMX19_05670 0.56 -0.8 388,586 - MPMX19_05670 0.56 +1.1 389,212 + +0.2 389,212 + +0.2 389,212 + +0.4 389,212 + +0.7 389,212 + -0.0 389,213 - -0.9 389,213 - -1.4 389,213 - +0.5 389,231 + -0.8 389,231 + -1.5 389,231 + -2.8 389,231 + +0.1 389,231 + +1.4 389,231 + -1.3 389,231 + +0.5 389,231 + +0.1 389,231 + -0.9 389,231 + -0.2 389,232 - -1.8 389,232 - +0.1 389,232 - -0.7 389,232 - +0.8 389,232 - +1.5 389,232 - +0.2 389,232 - -1.4 389,232 - -0.4 389,363 + -0.2 389,363 + -0.4 389,364 - -1.2 389,364 - -0.8 389,364 - +0.4 389,364 - +1.3 389,364 - +0.2 389,364 - -1.3 389,364 - +0.6 389,454 + MPMX19_05671 0.15 -0.5 389,454 + MPMX19_05671 0.15 -0.0 389,454 + MPMX19_05671 0.15 -0.3 389,454 + MPMX19_05671 0.15 +0.6 389,454 + MPMX19_05671 0.15 -0.7 389,454 + MPMX19_05671 0.15 +0.6 389,454 + MPMX19_05671 0.15 +0.2 389,454 + MPMX19_05671 0.15 -1.8 389,454 + MPMX19_05671 0.15 +0.1 389,454 + MPMX19_05671 0.15 -0.5 389,454 + MPMX19_05671 0.15 -0.3 389,454 + MPMX19_05671 0.15 -1.3 389,454 + MPMX19_05671 0.15 -0.3 389,455 - MPMX19_05671 0.15 +0.3 389,455 - MPMX19_05671 0.15 -0.8 389,455 - MPMX19_05671 0.15 -0.5 389,455 - MPMX19_05671 0.15 -0.6 389,455 - MPMX19_05671 0.15 -1.0 389,455 - MPMX19_05671 0.15 +0.1 389,455 - MPMX19_05671 0.15 -0.7 389,455 - MPMX19_05671 0.15 -0.7 389,455 - MPMX19_05671 0.15 -1.1 389,455 - MPMX19_05671 0.15 -0.7
Or see this region's nucleotide sequence