Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05666 and MPMX19_05667 are separated by 19 nucleotides MPMX19_05667 and MPMX19_05668 overlap by 4 nucleotides MPMX19_05668 and MPMX19_05669 are separated by 128 nucleotides MPMX19_05669 and MPMX19_05670 are separated by 170 nucleotides
MPMX19_05666: MPMX19_05666 - Periplasmic nitrate reductase, at 383,754 to 386,666
_05666
MPMX19_05667: MPMX19_05667 - hypothetical protein, at 386,686 to 386,910
_05667
MPMX19_05668: MPMX19_05668 - Chaperone protein TorD, at 386,907 to 387,515
_05668
MPMX19_05669: MPMX19_05669 - hypothetical protein, at 387,644 to 387,850
_05669
MPMX19_05670: MPMX19_05670 - Quinolinate synthase A, at 388,021 to 389,031
_05670
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 386.017 kb on + strand, within MPMX19_05666 at 386.018 kb on - strand, within MPMX19_05666 at 386.117 kb on - strand, within MPMX19_05666 at 386.122 kb on + strand, within MPMX19_05666 at 386.123 kb on - strand, within MPMX19_05666 at 386.123 kb on - strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.276 kb on - strand, within MPMX19_05666 at 386.276 kb on - strand, within MPMX19_05666 at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.706 kb on - strand at 386.706 kb on - strand at 386.706 kb on - strand at 386.706 kb on - strand at 387.001 kb on + strand, within MPMX19_05668 at 387.002 kb on - strand, within MPMX19_05668 at 387.002 kb on - strand, within MPMX19_05668 at 387.250 kb on + strand, within MPMX19_05668 at 387.250 kb on + strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.463 kb on + strand at 387.464 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.873 kb on + strand at 387.873 kb on + strand at 387.874 kb on - strand at 387.874 kb on - strand at 387.964 kb on - strand at 387.980 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 385,996 + MPMX19_05666 0.77 +0.9 385,996 + MPMX19_05666 0.77 -0.3 385,996 + MPMX19_05666 0.77 -0.4 385,996 + MPMX19_05666 0.77 -1.0 385,996 + MPMX19_05666 0.77 -1.0 385,996 + MPMX19_05666 0.77 -1.0 385,996 + MPMX19_05666 0.77 +0.8 385,996 + MPMX19_05666 0.77 -1.2 385,996 + MPMX19_05666 0.77 +0.9 385,996 + MPMX19_05666 0.77 -1.1 385,996 + MPMX19_05666 0.77 -0.2 385,996 + MPMX19_05666 0.77 -1.8 385,996 + MPMX19_05666 0.77 -0.6 385,996 + MPMX19_05666 0.77 -0.2 385,996 + MPMX19_05666 0.77 +0.2 385,996 + MPMX19_05666 0.77 -1.0 385,996 + MPMX19_05666 0.77 -1.4 385,996 + MPMX19_05666 0.77 +0.5 385,996 + MPMX19_05666 0.77 +0.3 385,996 + MPMX19_05666 0.77 +0.2 385,996 + MPMX19_05666 0.77 -1.4 385,997 - MPMX19_05666 0.77 -0.3 385,997 - MPMX19_05666 0.77 -1.3 385,997 - MPMX19_05666 0.77 -1.4 385,997 - MPMX19_05666 0.77 -1.0 385,997 - MPMX19_05666 0.77 -1.2 385,997 - MPMX19_05666 0.77 -1.0 385,997 - MPMX19_05666 0.77 +0.1 385,997 - MPMX19_05666 0.77 -0.7 385,997 - MPMX19_05666 0.77 +0.8 385,997 - MPMX19_05666 0.77 +0.4 385,997 - MPMX19_05666 0.77 -0.8 385,997 - MPMX19_05666 0.77 -0.1 385,997 - MPMX19_05666 0.77 -0.1 385,997 - MPMX19_05666 0.77 +0.2 386,017 + MPMX19_05666 0.78 -0.3 386,018 - MPMX19_05666 0.78 -0.5 386,117 - MPMX19_05666 0.81 -0.0 386,122 + MPMX19_05666 0.81 +0.2 386,123 - MPMX19_05666 0.81 -0.9 386,123 - MPMX19_05666 0.81 -0.3 386,275 + MPMX19_05666 0.87 +1.2 386,275 + MPMX19_05666 0.87 -1.0 386,275 + MPMX19_05666 0.87 +0.8 386,275 + MPMX19_05666 0.87 -0.5 386,276 - MPMX19_05666 0.87 -0.8 386,276 - MPMX19_05666 0.87 +1.1 386,687 + -1.4 386,687 + -2.8 386,687 + -1.3 386,687 + -0.3 386,687 + -1.0 386,687 + -0.2 386,687 + -0.2 386,688 - +0.4 386,688 - +0.5 386,688 - +0.4 386,688 - +1.5 386,688 - +0.6 386,705 + -1.2 386,705 + +2.1 386,705 + -0.4 386,705 + -0.5 386,706 - +1.6 386,706 - +0.1 386,706 - -0.7 386,706 - +1.8 387,001 + MPMX19_05668 0.15 -0.9 387,002 - MPMX19_05668 0.16 -0.3 387,002 - MPMX19_05668 0.16 -0.9 387,250 + MPMX19_05668 0.56 -2.5 387,250 + MPMX19_05668 0.56 -1.7 387,251 - MPMX19_05668 0.56 +0.2 387,251 - MPMX19_05668 0.56 +0.1 387,251 - MPMX19_05668 0.56 -1.0 387,253 + MPMX19_05668 0.57 +1.1 387,253 + MPMX19_05668 0.57 -0.1 387,253 + MPMX19_05668 0.57 -0.8 387,253 + MPMX19_05668 0.57 -0.7 387,253 + MPMX19_05668 0.57 +0.4 387,253 + MPMX19_05668 0.57 -0.2 387,253 + MPMX19_05668 0.57 -1.0 387,253 + MPMX19_05668 0.57 -0.5 387,253 + MPMX19_05668 0.57 +0.5 387,253 + MPMX19_05668 0.57 -3.3 387,253 + MPMX19_05668 0.57 -2.0 387,254 - MPMX19_05668 0.57 -1.4 387,254 - MPMX19_05668 0.57 -1.4 387,254 - MPMX19_05668 0.57 -0.0 387,254 - MPMX19_05668 0.57 -1.7 387,254 - MPMX19_05668 0.57 -1.9 387,254 - MPMX19_05668 0.57 +0.3 387,254 - MPMX19_05668 0.57 -0.8 387,254 - MPMX19_05668 0.57 -1.5 387,262 + MPMX19_05668 0.58 +0.1 387,262 + MPMX19_05668 0.58 +0.6 387,262 + MPMX19_05668 0.58 -0.2 387,262 + MPMX19_05668 0.58 -1.5 387,262 + MPMX19_05668 0.58 +0.8 387,262 + MPMX19_05668 0.58 -1.4 387,262 + MPMX19_05668 0.58 +1.1 387,262 + MPMX19_05668 0.58 -0.8 387,262 + MPMX19_05668 0.58 -0.1 387,262 + MPMX19_05668 0.58 -2.0 387,262 + MPMX19_05668 0.58 +1.1 387,262 + MPMX19_05668 0.58 +0.2 387,262 + MPMX19_05668 0.58 +0.3 387,262 + MPMX19_05668 0.58 +0.2 387,263 - MPMX19_05668 0.58 -1.0 387,263 - MPMX19_05668 0.58 +1.8 387,263 - MPMX19_05668 0.58 +0.0 387,263 - MPMX19_05668 0.58 +0.8 387,263 - MPMX19_05668 0.58 -1.7 387,263 - MPMX19_05668 0.58 -0.7 387,263 - MPMX19_05668 0.58 -2.2 387,263 - MPMX19_05668 0.58 +0.9 387,263 - MPMX19_05668 0.58 -0.3 387,263 - MPMX19_05668 0.58 -1.0 387,263 - MPMX19_05668 0.58 -0.5 387,263 - MPMX19_05668 0.58 -0.3 387,263 - MPMX19_05668 0.58 -1.2 387,263 - MPMX19_05668 0.58 -0.9 387,463 + +0.4 387,464 - +0.3 387,562 - -0.5 387,562 - -1.2 387,562 - -0.3 387,873 + -2.2 387,873 + +0.2 387,874 - -0.4 387,874 - -0.5 387,964 - +1.5 387,980 + -0.1 388,045 + +1.1 388,045 + -1.9 388,045 + -0.7 388,045 + +1.1 388,045 + +1.8 388,046 - +1.1 388,046 - -0.4 388,046 - -0.0 388,046 - +0.3 388,046 - +0.0 388,046 - -0.1 388,046 - +1.1 388,046 - +1.0 388,046 - +0.5 388,046 - -0.2 388,046 - -1.1 388,195 + MPMX19_05670 0.17 +0.1 388,195 + MPMX19_05670 0.17 -0.5 388,195 + MPMX19_05670 0.17 +0.8 388,195 + MPMX19_05670 0.17 +0.5 388,195 + MPMX19_05670 0.17 +0.2 388,195 + MPMX19_05670 0.17 -2.2 388,195 + MPMX19_05670 0.17 -1.4 388,196 - MPMX19_05670 0.17 -0.2 388,196 - MPMX19_05670 0.17 -0.3 388,196 - MPMX19_05670 0.17 +0.8 388,196 - MPMX19_05670 0.17 -0.7 388,196 - MPMX19_05670 0.17 +0.3 388,196 - MPMX19_05670 0.17 -1.0 388,456 + MPMX19_05670 0.43 -0.2 388,456 + MPMX19_05670 0.43 +0.5 388,456 + MPMX19_05670 0.43 -0.8 388,456 + MPMX19_05670 0.43 -0.5 388,456 + MPMX19_05670 0.43 -0.3 388,456 + MPMX19_05670 0.43 -1.1 388,456 + MPMX19_05670 0.43 +0.1 388,456 + MPMX19_05670 0.43 -0.2 388,457 - MPMX19_05670 0.43 +1.0 388,457 - MPMX19_05670 0.43 -1.3 388,457 - MPMX19_05670 0.43 -0.8 388,457 - MPMX19_05670 0.43 +0.8 388,457 - MPMX19_05670 0.43 +0.6 388,457 - MPMX19_05670 0.43 -0.5 388,457 - MPMX19_05670 0.43 -0.4 388,457 - MPMX19_05670 0.43 +1.2 388,457 - MPMX19_05670 0.43 -0.4 388,457 - MPMX19_05670 0.43 -0.1 388,457 - MPMX19_05670 0.43 -2.5 388,457 - MPMX19_05670 0.43 -0.7 388,457 - MPMX19_05670 0.43 -1.8 388,457 - MPMX19_05670 0.43 -0.3 388,457 - MPMX19_05670 0.43 -1.7
Or see this region's nucleotide sequence