Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05649 and MPMX19_05650 are separated by 89 nucleotides MPMX19_05650 and MPMX19_05651 are separated by 109 nucleotides MPMX19_05651 and MPMX19_05652 are separated by 244 nucleotides MPMX19_05652 and MPMX19_05653 are separated by 88 nucleotides
MPMX19_05649: MPMX19_05649 - hypothetical protein, at 367,375 to 368,457
_05649
MPMX19_05650: MPMX19_05650 - Ribonuclease HII, at 368,547 to 369,212
_05650
MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963
_05651
MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822
_05652
MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390
_05653
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.674 kb on + strand, within MPMX19_05650 at 368.675 kb on - strand, within MPMX19_05650 at 368.683 kb on + strand, within MPMX19_05650 at 368.684 kb on - strand, within MPMX19_05650 at 368.684 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.736 kb on - strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.863 kb on + strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 368.864 kb on - strand, within MPMX19_05650 at 369.245 kb on + strand at 369.245 kb on + strand at 369.245 kb on + strand at 369.246 kb on - strand at 369.246 kb on - strand at 369.270 kb on + strand at 369.335 kb on + strand at 369.335 kb on + strand at 369.336 kb on - strand at 369.336 kb on - strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.386 kb on + strand at 369.387 kb on - strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.541 kb on + strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.542 kb on - strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.592 kb on + strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.593 kb on - strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.622 kb on + strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.623 kb on - strand, within MPMX19_05651 at 369.663 kb on + strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.664 kb on - strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.850 kb on + strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.851 kb on - strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.853 kb on + strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.854 kb on - strand, within MPMX19_05651 at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.940 kb on + strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 369.941 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.048 kb on - strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.107 kb on + strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.108 kb on - strand at 370.182 kb on + strand at 370.182 kb on + strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.183 kb on - strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.203 kb on - strand at 370.538 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.556 kb on + strand, within MPMX19_05652 at 370.557 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652 at 370.596 kb on - strand, within MPMX19_05652
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 368,674 + MPMX19_05650 0.19 -0.0 368,674 + MPMX19_05650 0.19 +0.2 368,674 + MPMX19_05650 0.19 -0.8 368,674 + MPMX19_05650 0.19 +1.1 368,675 - MPMX19_05650 0.19 -0.1 368,683 + MPMX19_05650 0.20 +0.3 368,684 - MPMX19_05650 0.21 -0.9 368,684 - MPMX19_05650 0.21 -0.4 368,736 - MPMX19_05650 0.28 +0.8 368,736 - MPMX19_05650 0.28 -0.5 368,736 - MPMX19_05650 0.28 -2.3 368,863 + MPMX19_05650 0.47 +0.0 368,863 + MPMX19_05650 0.47 -1.5 368,863 + MPMX19_05650 0.47 -2.1 368,863 + MPMX19_05650 0.47 -0.1 368,863 + MPMX19_05650 0.47 -1.7 368,863 + MPMX19_05650 0.47 +0.0 368,863 + MPMX19_05650 0.47 -2.7 368,864 - MPMX19_05650 0.48 -1.4 368,864 - MPMX19_05650 0.48 -0.4 368,864 - MPMX19_05650 0.48 -0.1 368,864 - MPMX19_05650 0.48 -2.4 369,245 + -0.9 369,245 + -0.4 369,245 + -0.1 369,246 - +1.1 369,246 - -0.5 369,270 + -0.4 369,335 + -1.7 369,335 + -0.9 369,336 - -0.7 369,336 - -0.7 369,386 + -2.2 369,386 + -0.2 369,386 + -0.0 369,386 + -0.3 369,386 + -0.8 369,387 - MPMX19_05651 0.10 +0.2 369,541 + MPMX19_05651 0.34 -1.1 369,541 + MPMX19_05651 0.34 +0.4 369,541 + MPMX19_05651 0.34 -0.2 369,541 + MPMX19_05651 0.34 -0.5 369,541 + MPMX19_05651 0.34 -1.6 369,541 + MPMX19_05651 0.34 -1.0 369,542 - MPMX19_05651 0.34 +0.0 369,542 - MPMX19_05651 0.34 -0.4 369,542 - MPMX19_05651 0.34 -0.9 369,542 - MPMX19_05651 0.34 +0.2 369,542 - MPMX19_05651 0.34 -0.3 369,542 - MPMX19_05651 0.34 +0.9 369,542 - MPMX19_05651 0.34 -0.4 369,542 - MPMX19_05651 0.34 -0.2 369,542 - MPMX19_05651 0.34 -0.3 369,542 - MPMX19_05651 0.34 -0.1 369,542 - MPMX19_05651 0.34 -1.9 369,592 + MPMX19_05651 0.42 -0.8 369,592 + MPMX19_05651 0.42 -0.5 369,592 + MPMX19_05651 0.42 +0.2 369,593 - MPMX19_05651 0.42 -1.1 369,593 - MPMX19_05651 0.42 -0.2 369,622 + MPMX19_05651 0.47 +0.3 369,622 + MPMX19_05651 0.47 -0.1 369,622 + MPMX19_05651 0.47 +1.0 369,622 + MPMX19_05651 0.47 -0.2 369,622 + MPMX19_05651 0.47 -0.2 369,622 + MPMX19_05651 0.47 +0.8 369,623 - MPMX19_05651 0.47 +0.4 369,623 - MPMX19_05651 0.47 +0.2 369,623 - MPMX19_05651 0.47 -2.1 369,623 - MPMX19_05651 0.47 +0.4 369,623 - MPMX19_05651 0.47 +1.0 369,623 - MPMX19_05651 0.47 -0.6 369,623 - MPMX19_05651 0.47 -0.9 369,623 - MPMX19_05651 0.47 -0.7 369,623 - MPMX19_05651 0.47 +0.2 369,623 - MPMX19_05651 0.47 +0.2 369,623 - MPMX19_05651 0.47 -0.9 369,623 - MPMX19_05651 0.47 -1.5 369,623 - MPMX19_05651 0.47 +0.1 369,663 + MPMX19_05651 0.53 +1.2 369,664 - MPMX19_05651 0.53 +0.8 369,664 - MPMX19_05651 0.53 -0.8 369,850 + MPMX19_05651 0.82 -0.5 369,850 + MPMX19_05651 0.82 +0.5 369,850 + MPMX19_05651 0.82 +0.5 369,850 + MPMX19_05651 0.82 +0.2 369,850 + MPMX19_05651 0.82 -1.3 369,850 + MPMX19_05651 0.82 +0.7 369,850 + MPMX19_05651 0.82 +1.0 369,850 + MPMX19_05651 0.82 -0.1 369,850 + MPMX19_05651 0.82 -0.2 369,850 + MPMX19_05651 0.82 +0.7 369,850 + MPMX19_05651 0.82 +0.8 369,850 + MPMX19_05651 0.82 -0.9 369,850 + MPMX19_05651 0.82 +0.8 369,851 - MPMX19_05651 0.82 -0.7 369,851 - MPMX19_05651 0.82 -1.7 369,851 - MPMX19_05651 0.82 +0.4 369,851 - MPMX19_05651 0.82 -1.3 369,851 - MPMX19_05651 0.82 -0.0 369,851 - MPMX19_05651 0.82 -0.1 369,851 - MPMX19_05651 0.82 -0.5 369,851 - MPMX19_05651 0.82 +1.1 369,851 - MPMX19_05651 0.82 +0.9 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 +0.6 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 -0.9 369,853 + MPMX19_05651 0.83 -0.4 369,853 + MPMX19_05651 0.83 -0.9 369,853 + MPMX19_05651 0.83 -0.5 369,853 + MPMX19_05651 0.83 -0.0 369,853 + MPMX19_05651 0.83 -0.6 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 -1.0 369,853 + MPMX19_05651 0.83 -0.3 369,853 + MPMX19_05651 0.83 -2.3 369,853 + MPMX19_05651 0.83 +0.5 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 +0.5 369,853 + MPMX19_05651 0.83 -1.6 369,853 + MPMX19_05651 0.83 +0.2 369,853 + MPMX19_05651 0.83 -0.1 369,853 + MPMX19_05651 0.83 -0.0 369,853 + MPMX19_05651 0.83 -1.4 369,853 + MPMX19_05651 0.83 -0.8 369,853 + MPMX19_05651 0.83 +0.5 369,853 + MPMX19_05651 0.83 +1.5 369,853 + MPMX19_05651 0.83 +0.7 369,853 + MPMX19_05651 0.83 -1.4 369,853 + MPMX19_05651 0.83 +0.2 369,854 - MPMX19_05651 0.83 +0.3 369,854 - MPMX19_05651 0.83 +0.2 369,854 - MPMX19_05651 0.83 -1.1 369,854 - MPMX19_05651 0.83 -1.5 369,854 - MPMX19_05651 0.83 +0.1 369,854 - MPMX19_05651 0.83 -0.4 369,854 - MPMX19_05651 0.83 -1.2 369,854 - MPMX19_05651 0.83 +0.3 369,854 - MPMX19_05651 0.83 -0.7 369,854 - MPMX19_05651 0.83 -1.9 369,854 - MPMX19_05651 0.83 +0.5 369,854 - MPMX19_05651 0.83 -1.0 369,854 - MPMX19_05651 0.83 +1.5 369,854 - MPMX19_05651 0.83 +0.8 369,854 - MPMX19_05651 0.83 +0.1 369,854 - MPMX19_05651 0.83 -1.5 369,940 + -1.3 369,940 + +0.3 369,940 + +0.1 369,940 + +0.4 369,940 + -2.1 369,940 + +1.3 369,940 + -0.7 369,941 - +0.5 369,941 - -1.1 369,941 - -0.0 369,941 - +1.1 369,941 - -0.3 369,941 - -0.7 370,048 - +0.0 370,048 - -0.4 370,048 - -0.8 370,048 - -0.8 370,107 + -0.2 370,107 + +0.9 370,107 + -0.8 370,108 - +1.1 370,108 - -0.0 370,108 - -1.4 370,182 + -1.4 370,182 + -0.4 370,183 - -0.1 370,183 - +0.3 370,183 - -0.7 370,183 - +0.0 370,202 + +0.6 370,202 + +0.5 370,202 + +0.1 370,202 + -1.6 370,203 - +0.7 370,538 + MPMX19_05652 0.54 +0.9 370,556 + MPMX19_05652 0.57 -0.3 370,556 + MPMX19_05652 0.57 -0.5 370,556 + MPMX19_05652 0.57 -0.8 370,556 + MPMX19_05652 0.57 -0.2 370,557 - MPMX19_05652 0.57 +0.2 370,596 - MPMX19_05652 0.63 +0.8 370,596 - MPMX19_05652 0.63 +1.1 370,596 - MPMX19_05652 0.63 -0.6 370,596 - MPMX19_05652 0.63 -0.8
Or see this region's nucleotide sequence