Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05638

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05637 and MPMX19_05638 overlap by 4 nucleotidesMPMX19_05638 and MPMX19_05639 are separated by 392 nucleotides MPMX19_05637: MPMX19_05637 - Adaptive-response sensory-kinase SasA, at 355,418 to 357,637 _05637 MPMX19_05638: MPMX19_05638 - Aerobic respiration control protein ArcA, at 357,634 to 358,458 _05638 MPMX19_05639: MPMX19_05639 - hypothetical protein, at 358,851 to 362,003 _05639 Position (kb) 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 356.885 kb on + strand, within MPMX19_05637at 356.885 kb on + strand, within MPMX19_05637at 356.886 kb on - strand, within MPMX19_05637at 356.950 kb on + strand, within MPMX19_05637at 356.950 kb on + strand, within MPMX19_05637at 356.951 kb on - strand, within MPMX19_05637at 357.302 kb on + strand, within MPMX19_05637at 357.302 kb on + strand, within MPMX19_05637at 357.302 kb on + strand, within MPMX19_05637at 357.745 kb on + strand, within MPMX19_05638at 357.745 kb on + strand, within MPMX19_05638at 357.745 kb on + strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.746 kb on - strand, within MPMX19_05638at 357.810 kb on - strand, within MPMX19_05638at 357.822 kb on + strand, within MPMX19_05638at 357.979 kb on + strand, within MPMX19_05638at 357.979 kb on + strand, within MPMX19_05638at 357.979 kb on + strand, within MPMX19_05638at 357.979 kb on + strand, within MPMX19_05638at 357.979 kb on + strand, within MPMX19_05638at 357.980 kb on - strand, within MPMX19_05638at 357.980 kb on - strand, within MPMX19_05638at 357.980 kb on - strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.334 kb on + strand, within MPMX19_05638at 358.335 kb on - strand, within MPMX19_05638at 358.335 kb on - strand, within MPMX19_05638at 358.335 kb on - strand, within MPMX19_05638at 358.335 kb on - strand, within MPMX19_05638at 358.335 kb on - strand, within MPMX19_05638at 358.502 kb on + strandat 358.609 kb on - strandat 358.609 kb on - strandat 358.706 kb on - strandat 358.776 kb on + strandat 358.776 kb on + strandat 358.777 kb on - strandat 358.783 kb on + strandat 358.784 kb on - strandat 359.005 kb on - strandat 359.059 kb on - strandat 359.059 kb on - strandat 359.059 kb on - strandat 359.059 kb on - strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.160 kb on + strandat 359.161 kb on - strandat 359.161 kb on - strandat 359.161 kb on - strandat 359.161 kb on - strandat 359.161 kb on - strandat 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.214 kb on + strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.215 kb on - strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.328 kb on + strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.329 kb on - strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.427 kb on + strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639at 359.428 kb on - strand, within MPMX19_05639

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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356,885 + MPMX19_05637 0.66 -1.7
356,885 + MPMX19_05637 0.66 +0.0
356,886 - MPMX19_05637 0.66 +2.3
356,950 + MPMX19_05637 0.69 +1.5
356,950 + MPMX19_05637 0.69 -1.9
356,951 - MPMX19_05637 0.69 -0.1
357,302 + MPMX19_05637 0.85 -0.7
357,302 + MPMX19_05637 0.85 -0.8
357,302 + MPMX19_05637 0.85 -1.2
357,745 + MPMX19_05638 0.13 +1.1
357,745 + MPMX19_05638 0.13 +0.5
357,745 + MPMX19_05638 0.13 -0.4
357,746 - MPMX19_05638 0.14 -0.5
357,746 - MPMX19_05638 0.14 -1.4
357,746 - MPMX19_05638 0.14 -0.2
357,746 - MPMX19_05638 0.14 -1.4
357,746 - MPMX19_05638 0.14 -0.8
357,746 - MPMX19_05638 0.14 +0.1
357,746 - MPMX19_05638 0.14 +1.1
357,746 - MPMX19_05638 0.14 +0.1
357,810 - MPMX19_05638 0.21 +0.5
357,822 + MPMX19_05638 0.23 -0.9
357,979 + MPMX19_05638 0.42 +1.8
357,979 + MPMX19_05638 0.42 +1.8
357,979 + MPMX19_05638 0.42 +0.2
357,979 + MPMX19_05638 0.42 -0.5
357,979 + MPMX19_05638 0.42 -0.1
357,980 - MPMX19_05638 0.42 -0.7
357,980 - MPMX19_05638 0.42 -0.4
357,980 - MPMX19_05638 0.42 -1.3
358,334 + MPMX19_05638 0.85 -0.0
358,334 + MPMX19_05638 0.85 -0.3
358,334 + MPMX19_05638 0.85 -1.0
358,334 + MPMX19_05638 0.85 -2.5
358,334 + MPMX19_05638 0.85 -1.2
358,334 + MPMX19_05638 0.85 -0.8
358,334 + MPMX19_05638 0.85 -0.0
358,334 + MPMX19_05638 0.85 -0.5
358,335 - MPMX19_05638 0.85 +0.2
358,335 - MPMX19_05638 0.85 -0.0
358,335 - MPMX19_05638 0.85 -1.5
358,335 - MPMX19_05638 0.85 +0.3
358,335 - MPMX19_05638 0.85 -0.6
358,502 + -0.8
358,609 - -0.8
358,609 - -0.2
358,706 - +1.0
358,776 + +0.2
358,776 + -1.4
358,777 - +0.2
358,783 + -0.0
358,784 - -0.9
359,005 - +0.2
359,059 - +0.8
359,059 - -0.5
359,059 - +0.1
359,059 - -0.4
359,160 + -1.5
359,160 + -0.0
359,160 + -0.5
359,160 + +1.0
359,160 + +0.9
359,160 + +1.5
359,160 + -1.4
359,160 + -1.2
359,161 - -0.5
359,161 - -0.6
359,161 - +0.8
359,161 - -0.7
359,161 - +1.2
359,214 + MPMX19_05639 0.12 +1.1
359,214 + MPMX19_05639 0.12 -1.0
359,214 + MPMX19_05639 0.12 -0.0
359,214 + MPMX19_05639 0.12 +0.5
359,214 + MPMX19_05639 0.12 -0.4
359,214 + MPMX19_05639 0.12 +0.3
359,214 + MPMX19_05639 0.12 -0.9
359,214 + MPMX19_05639 0.12 +0.8
359,214 + MPMX19_05639 0.12 +0.2
359,214 + MPMX19_05639 0.12 +0.5
359,214 + MPMX19_05639 0.12 -0.6
359,214 + MPMX19_05639 0.12 -1.3
359,214 + MPMX19_05639 0.12 -1.2
359,214 + MPMX19_05639 0.12 +0.5
359,214 + MPMX19_05639 0.12 -1.0
359,214 + MPMX19_05639 0.12 -0.6
359,214 + MPMX19_05639 0.12 -0.2
359,214 + MPMX19_05639 0.12 +0.6
359,214 + MPMX19_05639 0.12 -0.3
359,214 + MPMX19_05639 0.12 +1.2
359,214 + MPMX19_05639 0.12 -2.2
359,214 + MPMX19_05639 0.12 -1.8
359,214 + MPMX19_05639 0.12 -0.9
359,214 + MPMX19_05639 0.12 +1.5
359,214 + MPMX19_05639 0.12 -0.1
359,214 + MPMX19_05639 0.12 +1.1
359,214 + MPMX19_05639 0.12 -0.9
359,214 + MPMX19_05639 0.12 -0.7
359,214 + MPMX19_05639 0.12 -0.7
359,214 + MPMX19_05639 0.12 -0.2
359,215 - MPMX19_05639 0.12 -0.8
359,215 - MPMX19_05639 0.12 -2.6
359,215 - MPMX19_05639 0.12 +0.6
359,215 - MPMX19_05639 0.12 -2.1
359,215 - MPMX19_05639 0.12 -0.5
359,215 - MPMX19_05639 0.12 -0.3
359,215 - MPMX19_05639 0.12 +0.4
359,215 - MPMX19_05639 0.12 -0.0
359,215 - MPMX19_05639 0.12 -0.7
359,215 - MPMX19_05639 0.12 -0.4
359,215 - MPMX19_05639 0.12 -0.8
359,215 - MPMX19_05639 0.12 +1.1
359,215 - MPMX19_05639 0.12 -0.3
359,215 - MPMX19_05639 0.12 -1.0
359,215 - MPMX19_05639 0.12 -0.8
359,215 - MPMX19_05639 0.12 -0.7
359,215 - MPMX19_05639 0.12 +0.3
359,215 - MPMX19_05639 0.12 -0.5
359,215 - MPMX19_05639 0.12 -2.3
359,215 - MPMX19_05639 0.12 -0.2
359,215 - MPMX19_05639 0.12 +0.2
359,328 + MPMX19_05639 0.15 -2.5
359,328 + MPMX19_05639 0.15 +0.5
359,328 + MPMX19_05639 0.15 +0.8
359,328 + MPMX19_05639 0.15 -1.8
359,328 + MPMX19_05639 0.15 -1.7
359,328 + MPMX19_05639 0.15 +0.9
359,328 + MPMX19_05639 0.15 -0.8
359,328 + MPMX19_05639 0.15 -1.8
359,328 + MPMX19_05639 0.15 -0.6
359,328 + MPMX19_05639 0.15 -0.7
359,328 + MPMX19_05639 0.15 +1.1
359,328 + MPMX19_05639 0.15 +0.1
359,328 + MPMX19_05639 0.15 -1.3
359,328 + MPMX19_05639 0.15 -0.2
359,328 + MPMX19_05639 0.15 +0.8
359,328 + MPMX19_05639 0.15 -1.8
359,328 + MPMX19_05639 0.15 +1.4
359,329 - MPMX19_05639 0.15 +0.8
359,329 - MPMX19_05639 0.15 +0.8
359,329 - MPMX19_05639 0.15 +1.2
359,329 - MPMX19_05639 0.15 +0.1
359,329 - MPMX19_05639 0.15 -0.1
359,329 - MPMX19_05639 0.15 -1.5
359,329 - MPMX19_05639 0.15 -0.2
359,329 - MPMX19_05639 0.15 -1.0
359,329 - MPMX19_05639 0.15 -1.2
359,329 - MPMX19_05639 0.15 -0.3
359,427 + MPMX19_05639 0.18 -0.1
359,427 + MPMX19_05639 0.18 -3.2
359,427 + MPMX19_05639 0.18 -0.1
359,427 + MPMX19_05639 0.18 -0.8
359,427 + MPMX19_05639 0.18 -0.8
359,427 + MPMX19_05639 0.18 +0.2
359,427 + MPMX19_05639 0.18 +0.2
359,427 + MPMX19_05639 0.18 -0.8
359,428 - MPMX19_05639 0.18 +0.2
359,428 - MPMX19_05639 0.18 +0.7
359,428 - MPMX19_05639 0.18 -0.0
359,428 - MPMX19_05639 0.18 -0.7
359,428 - MPMX19_05639 0.18 -1.0
359,428 - MPMX19_05639 0.18 +0.6
359,428 - MPMX19_05639 0.18 -0.5
359,428 - MPMX19_05639 0.18 -1.2
359,428 - MPMX19_05639 0.18 +0.6
359,428 - MPMX19_05639 0.18 +0.8
359,428 - MPMX19_05639 0.18 +0.5
359,428 - MPMX19_05639 0.18 -1.2
359,428 - MPMX19_05639 0.18 -1.9

Or see this region's nucleotide sequence