Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05608

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05607 and MPMX19_05608 overlap by 4 nucleotidesMPMX19_05608 and MPMX19_05609 are separated by 372 nucleotidesMPMX19_05609 and MPMX19_05610 are separated by 85 nucleotides MPMX19_05607: MPMX19_05607 - Sensor histidine kinase RcsC, at 317,570 to 320,332 _05607 MPMX19_05608: MPMX19_05608 - hypothetical protein, at 320,329 to 321,180 _05608 MPMX19_05609: MPMX19_05609 - hypothetical protein, at 321,553 to 321,741 _05609 MPMX19_05610: MPMX19_05610 - Efflux pump membrane transporter BepE, at 321,827 to 324,901 _05610 Position (kb) 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 319.488 kb on + strand, within MPMX19_05607at 319.489 kb on - strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.214 kb on + strandat 320.215 kb on - strandat 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.799 kb on - strand, within MPMX19_05608at 320.799 kb on - strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.864 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.027 kb on - strand, within MPMX19_05608at 321.027 kb on - strand, within MPMX19_05608at 321.268 kb on + strandat 321.268 kb on + strandat 321.282 kb on + strandat 321.282 kb on + strandat 321.282 kb on + strandat 321.283 kb on - strandat 321.283 kb on - strandat 321.306 kb on - strandat 321.306 kb on - strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.499 kb on + strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.500 kb on - strandat 321.520 kb on + strandat 321.520 kb on + strandat 321.520 kb on + strandat 321.532 kb on - strandat 321.532 kb on - strandat 321.876 kb on + strandat 321.876 kb on + strandat 321.876 kb on + strandat 321.876 kb on + strandat 321.877 kb on - strandat 321.877 kb on - strandat 321.900 kb on + strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strandat 321.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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319,488 + MPMX19_05607 0.69 -2.2
319,489 - MPMX19_05607 0.69 -1.1
319,716 + MPMX19_05607 0.78 +1.6
319,716 + MPMX19_05607 0.78 -1.0
319,716 + MPMX19_05607 0.78 -0.2
319,716 + MPMX19_05607 0.78 +0.6
319,716 + MPMX19_05607 0.78 +0.0
319,717 - MPMX19_05607 0.78 -1.0
319,717 - MPMX19_05607 0.78 +0.2
319,717 - MPMX19_05607 0.78 -0.1
319,717 - MPMX19_05607 0.78 -0.8
319,947 + MPMX19_05607 0.86 -1.0
319,947 + MPMX19_05607 0.86 -0.4
319,947 + MPMX19_05607 0.86 -1.4
319,947 + MPMX19_05607 0.86 +0.4
319,948 - MPMX19_05607 0.86 -1.0
319,948 - MPMX19_05607 0.86 +0.2
319,948 - MPMX19_05607 0.86 -0.2
320,067 + -0.5
320,067 + -0.4
320,067 + -1.5
320,067 + +1.1
320,067 + -1.4
320,067 + -0.4
320,068 - -1.8
320,068 - -1.3
320,068 - -1.0
320,068 - -0.5
320,122 - -0.9
320,122 - -0.4
320,122 - +0.0
320,122 - -1.0
320,122 - -0.2
320,122 - -1.5
320,122 - -0.2
320,122 - +0.0
320,214 + +0.4
320,215 - +0.1
320,438 + MPMX19_05608 0.13 -0.4
320,438 + MPMX19_05608 0.13 +0.2
320,438 + MPMX19_05608 0.13 -1.8
320,438 + MPMX19_05608 0.13 -1.4
320,439 - MPMX19_05608 0.13 -0.2
320,439 - MPMX19_05608 0.13 -1.5
320,439 - MPMX19_05608 0.13 -0.3
320,439 - MPMX19_05608 0.13 -0.5
320,525 + MPMX19_05608 0.23 -1.0
320,525 + MPMX19_05608 0.23 -1.0
320,525 + MPMX19_05608 0.23 -0.4
320,525 + MPMX19_05608 0.23 -1.6
320,525 + MPMX19_05608 0.23 +0.2
320,525 + MPMX19_05608 0.23 -0.4
320,525 + MPMX19_05608 0.23 +0.4
320,525 + MPMX19_05608 0.23 +0.2
320,525 + MPMX19_05608 0.23 -0.5
320,525 + MPMX19_05608 0.23 +0.7
320,525 + MPMX19_05608 0.23 -0.4
320,525 + MPMX19_05608 0.23 +0.4
320,525 + MPMX19_05608 0.23 +0.3
320,525 + MPMX19_05608 0.23 -0.6
320,525 + MPMX19_05608 0.23 +0.0
320,526 - MPMX19_05608 0.23 -0.4
320,526 - MPMX19_05608 0.23 +0.0
320,526 - MPMX19_05608 0.23 +0.5
320,526 - MPMX19_05608 0.23 +0.8
320,526 - MPMX19_05608 0.23 +0.0
320,526 - MPMX19_05608 0.23 +0.5
320,526 - MPMX19_05608 0.23 -0.7
320,526 - MPMX19_05608 0.23 -0.2
320,678 + MPMX19_05608 0.41 +0.7
320,678 + MPMX19_05608 0.41 -1.4
320,678 + MPMX19_05608 0.41 -1.0
320,678 + MPMX19_05608 0.41 +0.8
320,678 + MPMX19_05608 0.41 +0.8
320,679 - MPMX19_05608 0.41 -1.9
320,679 - MPMX19_05608 0.41 +0.2
320,679 - MPMX19_05608 0.41 -1.2
320,679 - MPMX19_05608 0.41 -1.5
320,679 - MPMX19_05608 0.41 +0.8
320,679 - MPMX19_05608 0.41 +1.0
320,679 - MPMX19_05608 0.41 -0.8
320,679 - MPMX19_05608 0.41 +0.6
320,798 + MPMX19_05608 0.55 -0.6
320,798 + MPMX19_05608 0.55 -0.1
320,798 + MPMX19_05608 0.55 +0.2
320,799 - MPMX19_05608 0.55 +0.2
320,799 - MPMX19_05608 0.55 -1.3
320,846 + MPMX19_05608 0.61 -0.2
320,846 + MPMX19_05608 0.61 +0.0
320,846 + MPMX19_05608 0.61 -0.2
320,846 + MPMX19_05608 0.61 -1.1
320,847 - MPMX19_05608 0.61 -0.2
320,847 - MPMX19_05608 0.61 +0.6
320,847 - MPMX19_05608 0.61 -0.2
320,847 - MPMX19_05608 0.61 -0.6
320,847 - MPMX19_05608 0.61 -0.7
320,847 - MPMX19_05608 0.61 +0.2
320,864 + MPMX19_05608 0.63 -0.7
320,921 + MPMX19_05608 0.69 -1.1
320,921 + MPMX19_05608 0.69 +0.1
320,921 + MPMX19_05608 0.69 +0.0
320,921 + MPMX19_05608 0.69 -0.3
320,921 + MPMX19_05608 0.69 +0.9
320,921 + MPMX19_05608 0.69 +0.5
320,921 + MPMX19_05608 0.69 -1.1
320,921 + MPMX19_05608 0.69 -0.1
320,921 + MPMX19_05608 0.69 -0.4
320,921 + MPMX19_05608 0.69 +1.4
320,921 + MPMX19_05608 0.69 -0.4
320,922 - MPMX19_05608 0.70 -0.2
320,922 - MPMX19_05608 0.70 -0.8
320,922 - MPMX19_05608 0.70 +1.3
320,922 - MPMX19_05608 0.70 -0.2
320,922 - MPMX19_05608 0.70 +0.5
320,922 - MPMX19_05608 0.70 -0.6
320,922 - MPMX19_05608 0.70 -1.9
320,922 - MPMX19_05608 0.70 -1.2
320,922 - MPMX19_05608 0.70 -1.0
320,922 - MPMX19_05608 0.70 -1.6
320,922 - MPMX19_05608 0.70 +0.0
320,922 - MPMX19_05608 0.70 -1.4
321,026 + MPMX19_05608 0.82 -1.6
321,026 + MPMX19_05608 0.82 -1.1
321,026 + MPMX19_05608 0.82 -1.5
321,027 - MPMX19_05608 0.82 -1.6
321,027 - MPMX19_05608 0.82 -1.2
321,268 + -1.1
321,268 + -0.3
321,282 + -1.6
321,282 + +1.3
321,282 + -0.6
321,283 - +0.4
321,283 - -0.6
321,306 - -0.5
321,306 - -0.2
321,499 + -0.8
321,499 + +0.0
321,499 + -0.2
321,499 + -2.4
321,499 + +0.3
321,499 + -0.8
321,499 + -0.9
321,499 + -0.8
321,499 + -0.4
321,499 + -0.1
321,499 + -2.4
321,499 + -0.6
321,499 + -0.2
321,500 - +1.8
321,500 - +0.3
321,500 - +1.2
321,500 - -0.8
321,500 - -1.2
321,500 - -0.4
321,500 - -0.3
321,500 - -0.5
321,520 + -0.1
321,520 + -0.6
321,520 + -1.4
321,532 - +0.6
321,532 - -0.8
321,876 + -0.6
321,876 + -0.9
321,876 + -0.5
321,876 + -0.3
321,877 - +0.8
321,877 - -1.5
321,900 + -0.8
321,901 - -0.4
321,901 - -0.8
321,901 - -0.2
321,901 - -0.6
321,901 - +0.7
321,901 - +0.1
321,901 - -1.2
321,901 - -2.1
321,901 - +0.1

Or see this region's nucleotide sequence