Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05581

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05580 and MPMX19_05581 are separated by 3 nucleotidesMPMX19_05581 and MPMX19_05582 are separated by 288 nucleotides MPMX19_05580: MPMX19_05580 - High-affinity branched-chain amino acid transport system permease protein LivH, at 289,553 to 290,440 _05580 MPMX19_05581: MPMX19_05581 - hypothetical protein, at 290,444 to 291,418 _05581 MPMX19_05582: MPMX19_05582 - Anaerobic nitric oxide reductase transcription regulator NorR, at 291,707 to 293,236 _05582 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.629 kb on - strandat 289.629 kb on - strandat 289.629 kb on - strandat 289.629 kb on - strandat 289.629 kb on - strandat 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.742 kb on + strand, within MPMX19_05580at 289.758 kb on - strand, within MPMX19_05580at 289.771 kb on + strand, within MPMX19_05580at 289.771 kb on + strand, within MPMX19_05580at 289.772 kb on - strand, within MPMX19_05580at 289.772 kb on - strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.838 kb on + strand, within MPMX19_05580at 289.839 kb on - strand, within MPMX19_05580at 289.839 kb on - strand, within MPMX19_05580at 289.839 kb on - strand, within MPMX19_05580at 289.839 kb on - strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.856 kb on + strand, within MPMX19_05580at 289.916 kb on + strand, within MPMX19_05580at 289.916 kb on + strand, within MPMX19_05580at 289.937 kb on + strand, within MPMX19_05580at 289.937 kb on + strand, within MPMX19_05580at 289.998 kb on - strand, within MPMX19_05580at 290.078 kb on + strand, within MPMX19_05580at 290.078 kb on + strand, within MPMX19_05580at 290.078 kb on + strand, within MPMX19_05580at 290.078 kb on + strand, within MPMX19_05580at 290.156 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.210 kb on + strand, within MPMX19_05580at 290.351 kb on + strand, within MPMX19_05580at 290.351 kb on + strand, within MPMX19_05580at 290.352 kb on - strandat 291.294 kb on - strand, within MPMX19_05581at 291.294 kb on - strand, within MPMX19_05581at 291.294 kb on - strand, within MPMX19_05581at 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.564 kb on + strandat 291.565 kb on - strandat 291.565 kb on - strandat 291.565 kb on - strandat 291.686 kb on + strandat 291.687 kb on - strandat 291.703 kb on + strandat 291.703 kb on + strandat 291.703 kb on + strandat 291.704 kb on - strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.706 kb on + strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.707 kb on - strandat 291.721 kb on + strandat 291.721 kb on + strandat 291.721 kb on + strandat 291.721 kb on + strandat 291.721 kb on + strandat 291.722 kb on - strandat 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.956 kb on + strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 291.957 kb on - strand, within MPMX19_05582at 292.178 kb on + strand, within MPMX19_05582at 292.178 kb on + strand, within MPMX19_05582at 292.178 kb on + strand, within MPMX19_05582at 292.178 kb on + strand, within MPMX19_05582at 292.178 kb on + strand, within MPMX19_05582at 292.179 kb on - strand, within MPMX19_05582at 292.179 kb on - strand, within MPMX19_05582at 292.179 kb on - strand, within MPMX19_05582at 292.179 kb on - strand, within MPMX19_05582at 292.179 kb on - strand, within MPMX19_05582at 292.202 kb on + strand, within MPMX19_05582at 292.202 kb on + strand, within MPMX19_05582at 292.203 kb on - strand, within MPMX19_05582at 292.203 kb on - strand, within MPMX19_05582at 292.203 kb on - strand, within MPMX19_05582at 292.203 kb on - strand, within MPMX19_05582at 292.203 kb on - strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.268 kb on + strand, within MPMX19_05582at 292.269 kb on - strand, within MPMX19_05582at 292.269 kb on - strand, within MPMX19_05582at 292.269 kb on - strand, within MPMX19_05582at 292.269 kb on - strand, within MPMX19_05582

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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289,629 - -1.0
289,629 - -1.3
289,629 - -0.2
289,629 - -0.5
289,629 - -0.6
289,742 + MPMX19_05580 0.21 -0.4
289,742 + MPMX19_05580 0.21 -0.8
289,742 + MPMX19_05580 0.21 -0.8
289,742 + MPMX19_05580 0.21 -0.1
289,742 + MPMX19_05580 0.21 -0.2
289,742 + MPMX19_05580 0.21 -0.7
289,742 + MPMX19_05580 0.21 +0.3
289,742 + MPMX19_05580 0.21 +0.4
289,742 + MPMX19_05580 0.21 -0.5
289,742 + MPMX19_05580 0.21 -0.4
289,742 + MPMX19_05580 0.21 -0.8
289,742 + MPMX19_05580 0.21 -0.5
289,742 + MPMX19_05580 0.21 -1.7
289,758 - MPMX19_05580 0.23 -1.3
289,771 + MPMX19_05580 0.25 -1.2
289,771 + MPMX19_05580 0.25 +1.0
289,772 - MPMX19_05580 0.25 +0.0
289,772 - MPMX19_05580 0.25 -2.2
289,838 + MPMX19_05580 0.32 -0.2
289,838 + MPMX19_05580 0.32 +0.5
289,838 + MPMX19_05580 0.32 +0.8
289,838 + MPMX19_05580 0.32 +0.4
289,838 + MPMX19_05580 0.32 +0.4
289,838 + MPMX19_05580 0.32 -0.6
289,838 + MPMX19_05580 0.32 -1.2
289,838 + MPMX19_05580 0.32 +0.2
289,839 - MPMX19_05580 0.32 -0.5
289,839 - MPMX19_05580 0.32 +1.0
289,839 - MPMX19_05580 0.32 -0.7
289,839 - MPMX19_05580 0.32 -0.3
289,856 + MPMX19_05580 0.34 -1.3
289,856 + MPMX19_05580 0.34 +0.0
289,856 + MPMX19_05580 0.34 +0.4
289,856 + MPMX19_05580 0.34 +0.2
289,856 + MPMX19_05580 0.34 +0.9
289,856 + MPMX19_05580 0.34 -0.1
289,856 + MPMX19_05580 0.34 -2.6
289,916 + MPMX19_05580 0.41 -1.1
289,916 + MPMX19_05580 0.41 -1.0
289,937 + MPMX19_05580 0.43 -2.3
289,937 + MPMX19_05580 0.43 +0.8
289,998 - MPMX19_05580 0.50 -0.2
290,078 + MPMX19_05580 0.59 -0.5
290,078 + MPMX19_05580 0.59 +0.2
290,078 + MPMX19_05580 0.59 -0.3
290,078 + MPMX19_05580 0.59 +0.8
290,156 + MPMX19_05580 0.68 +0.4
290,210 + MPMX19_05580 0.74 +0.0
290,210 + MPMX19_05580 0.74 -0.0
290,210 + MPMX19_05580 0.74 -0.3
290,210 + MPMX19_05580 0.74 +0.2
290,210 + MPMX19_05580 0.74 +0.4
290,210 + MPMX19_05580 0.74 +0.0
290,210 + MPMX19_05580 0.74 +0.2
290,210 + MPMX19_05580 0.74 +0.1
290,210 + MPMX19_05580 0.74 -2.1
290,210 + MPMX19_05580 0.74 +0.5
290,210 + MPMX19_05580 0.74 -1.2
290,210 + MPMX19_05580 0.74 -0.2
290,351 + MPMX19_05580 0.90 -0.2
290,351 + MPMX19_05580 0.90 -1.6
290,352 - -0.6
291,294 - MPMX19_05581 0.87 +0.8
291,294 - MPMX19_05581 0.87 +0.4
291,294 - MPMX19_05581 0.87 -0.4
291,564 + +0.9
291,564 + -1.0
291,564 + -0.2
291,564 + +0.1
291,564 + +0.3
291,564 + -0.5
291,564 + -0.8
291,564 + +0.2
291,565 - -1.3
291,565 - -0.1
291,565 - +0.5
291,686 + +0.0
291,687 - +0.5
291,703 + +0.5
291,703 + -0.2
291,703 + +0.8
291,704 - -0.2
291,706 + -1.2
291,706 + -0.7
291,706 + +0.2
291,706 + +0.5
291,706 + -0.5
291,706 + -1.3
291,706 + +0.7
291,706 + +1.1
291,706 + +0.6
291,706 + -1.0
291,706 + -0.8
291,706 + -0.8
291,707 - -1.9
291,707 - +1.1
291,707 - -1.2
291,707 - -0.5
291,707 - +1.0
291,707 - -0.8
291,707 - -0.3
291,707 - -1.1
291,721 + -0.2
291,721 + -1.3
291,721 + -1.4
291,721 + -1.6
291,721 + +0.2
291,722 - -0.8
291,956 + MPMX19_05582 0.16 -1.2
291,956 + MPMX19_05582 0.16 -0.9
291,956 + MPMX19_05582 0.16 -0.9
291,956 + MPMX19_05582 0.16 +0.3
291,956 + MPMX19_05582 0.16 -1.8
291,956 + MPMX19_05582 0.16 +0.6
291,956 + MPMX19_05582 0.16 -1.2
291,956 + MPMX19_05582 0.16 -0.3
291,956 + MPMX19_05582 0.16 +0.4
291,956 + MPMX19_05582 0.16 -2.6
291,956 + MPMX19_05582 0.16 -1.2
291,956 + MPMX19_05582 0.16 -0.3
291,956 + MPMX19_05582 0.16 -0.2
291,956 + MPMX19_05582 0.16 -1.3
291,957 - MPMX19_05582 0.16 +1.2
291,957 - MPMX19_05582 0.16 +0.8
291,957 - MPMX19_05582 0.16 +0.9
291,957 - MPMX19_05582 0.16 +1.5
291,957 - MPMX19_05582 0.16 -0.2
291,957 - MPMX19_05582 0.16 +0.2
291,957 - MPMX19_05582 0.16 -0.1
292,178 + MPMX19_05582 0.31 -0.2
292,178 + MPMX19_05582 0.31 -1.1
292,178 + MPMX19_05582 0.31 -1.0
292,178 + MPMX19_05582 0.31 +0.8
292,178 + MPMX19_05582 0.31 +0.9
292,179 - MPMX19_05582 0.31 +1.4
292,179 - MPMX19_05582 0.31 +0.1
292,179 - MPMX19_05582 0.31 +1.0
292,179 - MPMX19_05582 0.31 -0.2
292,179 - MPMX19_05582 0.31 +1.6
292,202 + MPMX19_05582 0.32 -0.5
292,202 + MPMX19_05582 0.32 +1.0
292,203 - MPMX19_05582 0.32 +1.8
292,203 - MPMX19_05582 0.32 +0.1
292,203 - MPMX19_05582 0.32 -0.4
292,203 - MPMX19_05582 0.32 +0.2
292,203 - MPMX19_05582 0.32 -1.0
292,268 + MPMX19_05582 0.37 +0.6
292,268 + MPMX19_05582 0.37 +0.4
292,268 + MPMX19_05582 0.37 -1.3
292,268 + MPMX19_05582 0.37 -0.8
292,268 + MPMX19_05582 0.37 +0.5
292,268 + MPMX19_05582 0.37 -2.8
292,268 + MPMX19_05582 0.37 +1.3
292,268 + MPMX19_05582 0.37 -0.8
292,269 - MPMX19_05582 0.37 +0.0
292,269 - MPMX19_05582 0.37 -2.3
292,269 - MPMX19_05582 0.37 -1.0
292,269 - MPMX19_05582 0.37 -0.2

Or see this region's nucleotide sequence