Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05574 and MPMX19_05575 are separated by 14 nucleotides MPMX19_05575 and MPMX19_05576 are separated by 10 nucleotides MPMX19_05576 and MPMX19_05577 are separated by 598 nucleotides
MPMX19_05574: MPMX19_05574 - hypothetical protein, at 283,885 to 284,946
_05574
MPMX19_05575: MPMX19_05575 - hypothetical protein, at 284,961 to 285,755
_05575
MPMX19_05576: MPMX19_05576 - hypothetical protein, at 285,766 to 285,966
_05576
MPMX19_05577: MPMX19_05577 - Lipopolysaccharide export system ATP-binding protein LptB, at 286,565 to 287,332
_05577
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.437 kb on - strand, within MPMX19_05575 at 285.437 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.597 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.638 kb on - strand, within MPMX19_05575 at 285.756 kb on - strand at 285.756 kb on - strand at 285.756 kb on - strand at 285.756 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.768 kb on - strand at 285.849 kb on - strand, within MPMX19_05576 at 285.849 kb on - strand, within MPMX19_05576 at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.112 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.180 kb on - strand at 286.183 kb on - strand at 286.183 kb on - strand at 286.361 kb on + strand at 286.476 kb on + strand at 286.476 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 285,437 - MPMX19_05575 0.60 +0.2 285,437 - MPMX19_05575 0.60 +0.5 285,597 - MPMX19_05575 0.80 +0.2 285,597 - MPMX19_05575 0.80 +0.6 285,597 - MPMX19_05575 0.80 +0.7 285,597 - MPMX19_05575 0.80 +0.7 285,638 - MPMX19_05575 0.85 -0.1 285,638 - MPMX19_05575 0.85 -1.1 285,638 - MPMX19_05575 0.85 +0.5 285,638 - MPMX19_05575 0.85 -0.2 285,756 - +0.0 285,756 - -0.4 285,756 - +2.1 285,756 - -0.6 285,768 - -2.2 285,768 - -0.0 285,768 - -0.3 285,768 - -0.2 285,768 - -0.1 285,768 - -0.6 285,849 - MPMX19_05576 0.41 +0.0 285,849 - MPMX19_05576 0.41 -1.5 286,112 - +0.3 286,112 - -2.2 286,112 - +0.3 286,112 - +1.8 286,112 - -0.4 286,180 - -2.0 286,180 - +0.6 286,180 - +1.6 286,180 - +0.6 286,180 - +0.1 286,180 - +0.9 286,180 - +1.8 286,180 - -2.5 286,183 - -1.7 286,183 - +1.3 286,361 + +0.3 286,476 + +0.1 286,476 + -1.1 286,521 + -1.5 286,521 + -1.0 286,521 + -0.3 286,521 + +0.4 286,521 + -0.3 286,521 + +0.1 286,521 + -0.6 286,521 + -0.8 286,521 + -0.1 286,521 + -0.8 286,521 + +0.0 286,521 + -1.5 286,522 - +0.1 286,522 - -0.8 286,522 - -0.1 286,522 - -0.3 286,522 - -1.2 286,522 - -0.4 286,522 - -1.5 286,522 - +0.6 286,522 - +0.8 286,522 - -1.1 286,522 - -1.6 286,522 - -0.3 286,522 - -0.5 286,522 - -0.1 286,522 - -1.5 286,522 - -0.5 286,522 - +0.0 286,522 - -0.6 286,522 - -0.2 286,534 + -1.6 286,534 + +0.2 286,534 + -0.5 286,534 + +0.0 286,535 - -0.5 286,535 - -0.1 286,535 - -0.4 286,535 - -1.2 286,535 - -2.6 286,535 - +1.0 286,535 - +0.8 286,535 - +0.8 286,535 - +0.2 286,535 - +0.2 286,535 - +0.2 286,535 - +0.2 286,535 - -1.8
Or see this region's nucleotide sequence