Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05534

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05532 and MPMX19_05533 are separated by 93 nucleotidesMPMX19_05533 and MPMX19_05534 are separated by 118 nucleotidesMPMX19_05534 and MPMX19_05535 are separated by 30 nucleotides MPMX19_05532: MPMX19_05532 - hypothetical protein, at 239,488 to 240,237 _05532 MPMX19_05533: MPMX19_05533 - tRNA-Phe, at 240,331 to 240,406 _05533 MPMX19_05534: MPMX19_05534 - DNA gyrase inhibitor YacG, at 240,525 to 240,764 _05534 MPMX19_05535: MPMX19_05535 - Ribonuclease G, at 240,795 to 242,030 _05535 Position (kb) 240 241Strain fitness (log2 ratio) -2 -1 0 1 2at 239.653 kb on + strand, within MPMX19_05532at 239.653 kb on + strand, within MPMX19_05532at 239.653 kb on + strand, within MPMX19_05532at 239.653 kb on + strand, within MPMX19_05532at 239.654 kb on - strand, within MPMX19_05532at 239.654 kb on - strand, within MPMX19_05532at 239.654 kb on - strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.734 kb on + strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.735 kb on - strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.743 kb on + strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.744 kb on - strand, within MPMX19_05532at 239.914 kb on + strand, within MPMX19_05532at 239.914 kb on + strand, within MPMX19_05532at 239.914 kb on + strand, within MPMX19_05532at 239.926 kb on + strand, within MPMX19_05532at 239.926 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.031 kb on + strand, within MPMX19_05532at 240.032 kb on - strand, within MPMX19_05532at 240.138 kb on + strand, within MPMX19_05532at 240.138 kb on + strand, within MPMX19_05532at 240.139 kb on - strand, within MPMX19_05532at 240.241 kb on + strandat 240.589 kb on + strand, within MPMX19_05534at 240.589 kb on + strand, within MPMX19_05534at 240.590 kb on - strand, within MPMX19_05534at 240.590 kb on - strand, within MPMX19_05534at 240.778 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.788 kb on + strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.789 kb on - strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.874 kb on + strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strandat 240.875 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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239,653 + MPMX19_05532 0.22 +0.1
239,653 + MPMX19_05532 0.22 -0.2
239,653 + MPMX19_05532 0.22 -0.5
239,653 + MPMX19_05532 0.22 -1.7
239,654 - MPMX19_05532 0.22 +0.9
239,654 - MPMX19_05532 0.22 +0.3
239,654 - MPMX19_05532 0.22 +1.4
239,734 + MPMX19_05532 0.33 -0.2
239,734 + MPMX19_05532 0.33 -0.1
239,734 + MPMX19_05532 0.33 -0.7
239,734 + MPMX19_05532 0.33 +0.8
239,734 + MPMX19_05532 0.33 -0.6
239,734 + MPMX19_05532 0.33 -2.5
239,734 + MPMX19_05532 0.33 -1.3
239,734 + MPMX19_05532 0.33 -2.7
239,734 + MPMX19_05532 0.33 +0.5
239,734 + MPMX19_05532 0.33 -1.7
239,734 + MPMX19_05532 0.33 +0.4
239,734 + MPMX19_05532 0.33 +0.3
239,734 + MPMX19_05532 0.33 +1.2
239,734 + MPMX19_05532 0.33 -0.2
239,734 + MPMX19_05532 0.33 +0.2
239,734 + MPMX19_05532 0.33 +0.6
239,734 + MPMX19_05532 0.33 -1.2
239,734 + MPMX19_05532 0.33 +0.6
239,734 + MPMX19_05532 0.33 -0.2
239,734 + MPMX19_05532 0.33 +0.3
239,734 + MPMX19_05532 0.33 +0.0
239,734 + MPMX19_05532 0.33 -1.3
239,734 + MPMX19_05532 0.33 -1.2
239,734 + MPMX19_05532 0.33 +0.2
239,734 + MPMX19_05532 0.33 +0.3
239,734 + MPMX19_05532 0.33 +0.8
239,734 + MPMX19_05532 0.33 +0.0
239,735 - MPMX19_05532 0.33 -0.5
239,735 - MPMX19_05532 0.33 -1.5
239,735 - MPMX19_05532 0.33 -0.6
239,735 - MPMX19_05532 0.33 -0.7
239,735 - MPMX19_05532 0.33 +0.2
239,735 - MPMX19_05532 0.33 -1.6
239,735 - MPMX19_05532 0.33 -0.4
239,735 - MPMX19_05532 0.33 -1.2
239,735 - MPMX19_05532 0.33 -0.3
239,735 - MPMX19_05532 0.33 -0.4
239,735 - MPMX19_05532 0.33 -1.3
239,735 - MPMX19_05532 0.33 -1.5
239,735 - MPMX19_05532 0.33 +2.2
239,735 - MPMX19_05532 0.33 +0.5
239,735 - MPMX19_05532 0.33 -0.2
239,735 - MPMX19_05532 0.33 -1.0
239,735 - MPMX19_05532 0.33 -0.4
239,735 - MPMX19_05532 0.33 -0.7
239,735 - MPMX19_05532 0.33 +0.0
239,735 - MPMX19_05532 0.33 +1.2
239,743 + MPMX19_05532 0.34 +0.4
239,743 + MPMX19_05532 0.34 +0.6
239,743 + MPMX19_05532 0.34 -1.3
239,743 + MPMX19_05532 0.34 -0.6
239,743 + MPMX19_05532 0.34 -0.9
239,743 + MPMX19_05532 0.34 -0.9
239,743 + MPMX19_05532 0.34 -0.2
239,743 + MPMX19_05532 0.34 -0.1
239,743 + MPMX19_05532 0.34 +0.5
239,743 + MPMX19_05532 0.34 -2.4
239,743 + MPMX19_05532 0.34 +0.4
239,743 + MPMX19_05532 0.34 -0.6
239,744 - MPMX19_05532 0.34 -0.2
239,744 - MPMX19_05532 0.34 -0.7
239,744 - MPMX19_05532 0.34 -0.7
239,744 - MPMX19_05532 0.34 -2.4
239,744 - MPMX19_05532 0.34 +0.3
239,744 - MPMX19_05532 0.34 -0.6
239,744 - MPMX19_05532 0.34 -1.3
239,744 - MPMX19_05532 0.34 -1.0
239,744 - MPMX19_05532 0.34 -1.1
239,744 - MPMX19_05532 0.34 -0.9
239,914 + MPMX19_05532 0.57 +0.8
239,914 + MPMX19_05532 0.57 -0.7
239,914 + MPMX19_05532 0.57 -0.2
239,926 + MPMX19_05532 0.58 +0.5
239,926 + MPMX19_05532 0.58 -0.5
240,031 + MPMX19_05532 0.72 -1.8
240,031 + MPMX19_05532 0.72 +0.8
240,031 + MPMX19_05532 0.72 -1.5
240,031 + MPMX19_05532 0.72 -0.1
240,031 + MPMX19_05532 0.72 -0.1
240,031 + MPMX19_05532 0.72 +0.4
240,031 + MPMX19_05532 0.72 -0.2
240,031 + MPMX19_05532 0.72 -0.6
240,031 + MPMX19_05532 0.72 +0.8
240,031 + MPMX19_05532 0.72 -1.4
240,031 + MPMX19_05532 0.72 +0.1
240,031 + MPMX19_05532 0.72 +0.6
240,032 - MPMX19_05532 0.73 +0.5
240,138 + MPMX19_05532 0.87 -1.2
240,138 + MPMX19_05532 0.87 -0.6
240,139 - MPMX19_05532 0.87 -0.5
240,241 + -1.2
240,589 + MPMX19_05534 0.27 -1.3
240,589 + MPMX19_05534 0.27 -0.3
240,590 - MPMX19_05534 0.27 -0.5
240,590 - MPMX19_05534 0.27 -0.9
240,778 + +0.6
240,788 + -1.3
240,788 + -0.5
240,788 + +0.5
240,788 + +0.0
240,788 + -0.5
240,788 + -1.3
240,788 + -1.0
240,788 + +0.6
240,788 + -1.0
240,789 - -1.2
240,789 - -0.2
240,789 - -1.6
240,789 - -2.0
240,789 - +0.7
240,789 - -1.4
240,789 - -0.5
240,789 - +0.5
240,789 - -0.4
240,789 - -0.4
240,789 - -0.4
240,789 - -0.5
240,789 - -1.3
240,874 + -0.7
240,874 + -0.3
240,874 + +0.5
240,874 + +0.3
240,874 + -1.2
240,874 + -0.3
240,874 + -0.3
240,874 + -0.2
240,874 + -1.1
240,874 + -0.7
240,874 + +0.0
240,874 + -1.7
240,875 - -0.2
240,875 - -1.9
240,875 - +0.3
240,875 - -2.0
240,875 - -1.5
240,875 - +0.6
240,875 - -0.2
240,875 - -1.2
240,875 - +0.5
240,875 - +0.4
240,875 - -0.3

Or see this region's nucleotide sequence