Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05519 and MPMX19_05520 are separated by 261 nucleotides MPMX19_05520 and MPMX19_05521 are separated by 112 nucleotides MPMX19_05521 and MPMX19_05522 are separated by 404 nucleotides
MPMX19_05519: MPMX19_05519 - LL-diaminopimelate aminotransferase, at 226,248 to 227,504
_05519
MPMX19_05520: MPMX19_05520 - hypothetical protein, at 227,766 to 228,329
_05520
MPMX19_05521: MPMX19_05521 - Nitrogen regulatory protein P-II 2, at 228,442 to 228,780
_05521
MPMX19_05522: MPMX19_05522 - Ubiquinone hydroxylase UbiL, at 229,185 to 230,459
_05522
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.589 kb on - strand at 227.589 kb on - strand at 227.677 kb on + strand at 227.677 kb on + strand at 227.678 kb on - strand at 227.692 kb on + strand at 227.692 kb on + strand at 227.693 kb on - strand at 227.709 kb on - strand at 228.165 kb on + strand, within MPMX19_05520 at 228.165 kb on + strand, within MPMX19_05520 at 228.165 kb on + strand, within MPMX19_05520 at 228.166 kb on - strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.205 kb on - strand, within MPMX19_05520 at 228.205 kb on - strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.291 kb on + strand at 228.292 kb on - strand at 228.347 kb on + strand at 228.348 kb on - strand at 228.348 kb on - strand at 228.348 kb on - strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.629 kb on + strand, within MPMX19_05521 at 228.644 kb on + strand, within MPMX19_05521 at 228.769 kb on - strand at 228.769 kb on - strand at 228.769 kb on - strand at 228.793 kb on + strand at 228.793 kb on + strand at 228.794 kb on - strand at 228.794 kb on - strand at 228.862 kb on + strand at 228.862 kb on + strand at 228.863 kb on - strand at 228.919 kb on + strand at 228.919 kb on + strand at 228.919 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.162 kb on - strand at 229.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 227,589 - +0.5 227,589 - -0.5 227,677 + -3.1 227,677 + +0.3 227,678 - +0.9 227,692 + -1.0 227,692 + -0.7 227,693 - -0.1 227,709 - +0.9 228,165 + MPMX19_05520 0.71 +0.3 228,165 + MPMX19_05520 0.71 +0.9 228,165 + MPMX19_05520 0.71 -2.1 228,166 - MPMX19_05520 0.71 -0.1 228,204 + MPMX19_05520 0.78 +0.7 228,204 + MPMX19_05520 0.78 -0.7 228,204 + MPMX19_05520 0.78 -0.5 228,204 + MPMX19_05520 0.78 -1.7 228,204 + MPMX19_05520 0.78 -0.3 228,204 + MPMX19_05520 0.78 -0.7 228,205 - MPMX19_05520 0.78 -0.0 228,205 - MPMX19_05520 0.78 -0.5 228,228 + MPMX19_05520 0.82 +0.7 228,228 + MPMX19_05520 0.82 -1.5 228,228 + MPMX19_05520 0.82 -1.1 228,228 + MPMX19_05520 0.82 +1.2 228,228 + MPMX19_05520 0.82 -0.1 228,228 + MPMX19_05520 0.82 -0.4 228,228 + MPMX19_05520 0.82 +0.2 228,229 - MPMX19_05520 0.82 +0.6 228,229 - MPMX19_05520 0.82 +0.8 228,229 - MPMX19_05520 0.82 +1.2 228,229 - MPMX19_05520 0.82 +1.5 228,229 - MPMX19_05520 0.82 -0.6 228,291 + +0.0 228,292 - +0.6 228,347 + -0.6 228,348 - +0.2 228,348 - -0.2 228,348 - -0.8 228,443 + -1.4 228,443 + -1.3 228,443 + +2.4 228,443 + -0.7 228,443 + +0.2 228,443 + +0.6 228,443 + -0.2 228,443 + -1.5 228,443 + -0.7 228,443 + -1.7 228,444 - +0.4 228,444 - +1.6 228,444 - -0.1 228,444 - -0.5 228,444 - +1.1 228,444 - -0.5 228,572 + MPMX19_05521 0.38 -2.7 228,572 + MPMX19_05521 0.38 -1.5 228,572 + MPMX19_05521 0.38 -1.6 228,572 + MPMX19_05521 0.38 -0.1 228,572 + MPMX19_05521 0.38 -1.1 228,572 + MPMX19_05521 0.38 -0.7 228,573 - MPMX19_05521 0.39 -0.8 228,573 - MPMX19_05521 0.39 -1.3 228,573 - MPMX19_05521 0.39 -2.0 228,629 + MPMX19_05521 0.55 +0.5 228,644 + MPMX19_05521 0.60 +0.4 228,769 - -1.1 228,769 - +0.3 228,769 - -1.6 228,793 + -0.3 228,793 + -2.2 228,794 - -0.6 228,794 - +0.6 228,862 + -0.7 228,862 + -0.3 228,863 - -0.6 228,919 + -2.5 228,919 + -1.4 228,919 + -0.1 228,961 + -1.3 228,961 + -0.7 228,961 + -0.7 228,961 + +0.7 228,961 + +0.0 228,962 - -1.0 228,962 - -0.5 228,962 - -0.5 228,962 - -1.4 228,962 - +1.0 228,962 - -0.5 228,962 - +1.3 228,962 - -1.0 228,962 - -0.5 228,962 - -1.1 229,161 + -1.0 229,161 + -0.1 229,161 + -0.3 229,161 + -0.3 229,161 + +0.2 229,161 + -0.3 229,161 + -1.0 229,161 + +0.6 229,161 + +0.1 229,161 + -1.1 229,161 + -2.4 229,161 + -1.4 229,161 + -0.5 229,161 + +0.4 229,161 + -1.3 229,161 + -1.8 229,161 + +0.7 229,161 + -2.0 229,161 + -2.2 229,161 + -1.0 229,161 + -0.5 229,161 + +0.4 229,161 + +1.0 229,161 + -2.4 229,162 - +1.4 229,162 - -0.1
Or see this region's nucleotide sequence