Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05433 and MPMX19_05434 are separated by 4 nucleotides MPMX19_05434 and MPMX19_05435 are separated by 44 nucleotides MPMX19_05435 and MPMX19_05436 are separated by 85 nucleotides MPMX19_05436 and MPMX19_05437 are separated by 7 nucleotides
MPMX19_05433: MPMX19_05433 - hypothetical protein, at 125,307 to 125,558
_05433
MPMX19_05434: MPMX19_05434 - hypothetical protein, at 125,563 to 125,997
_05434
MPMX19_05435: MPMX19_05435 - L-threo-3-hydroxyaspartate ammonia-lyase, at 126,042 to 127,058
_05435
MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950
_05436
MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344
_05437
Position (kb)
126
127
128 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 125.189 kb on - strand at 125.252 kb on + strand at 125.253 kb on - strand at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.343 kb on + strand, within MPMX19_05433 at 125.344 kb on - strand, within MPMX19_05433 at 125.344 kb on - strand, within MPMX19_05433 at 125.344 kb on - strand, within MPMX19_05433 at 125.344 kb on - strand, within MPMX19_05433 at 125.484 kb on + strand, within MPMX19_05433 at 125.484 kb on + strand, within MPMX19_05433 at 125.484 kb on + strand, within MPMX19_05433 at 125.485 kb on - strand, within MPMX19_05433 at 125.485 kb on - strand, within MPMX19_05433 at 125.485 kb on - strand, within MPMX19_05433 at 125.605 kb on + strand at 125.605 kb on + strand at 125.605 kb on + strand at 125.606 kb on - strand at 125.794 kb on + strand, within MPMX19_05434 at 125.794 kb on + strand, within MPMX19_05434 at 125.795 kb on - strand, within MPMX19_05434 at 125.795 kb on - strand, within MPMX19_05434 at 125.795 kb on - strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.803 kb on + strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.804 kb on - strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.938 kb on + strand, within MPMX19_05434 at 125.939 kb on - strand, within MPMX19_05434 at 125.939 kb on - strand, within MPMX19_05434 at 125.939 kb on - strand, within MPMX19_05434 at 125.995 kb on + strand at 125.995 kb on + strand at 125.995 kb on + strand at 125.995 kb on + strand at 125.995 kb on + strand at 125.995 kb on + strand at 125.996 kb on - strand at 125.996 kb on - strand at 125.996 kb on - strand at 126.078 kb on - strand at 126.099 kb on + strand at 126.099 kb on + strand at 126.099 kb on + strand at 126.100 kb on - strand at 126.100 kb on - strand at 126.100 kb on - strand at 126.100 kb on - strand at 126.100 kb on - strand at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.309 kb on + strand, within MPMX19_05435 at 126.310 kb on - strand, within MPMX19_05435 at 126.310 kb on - strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.457 kb on - strand, within MPMX19_05435 at 127.128 kb on + strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.175 kb on - strand at 127.175 kb on - strand at 127.175 kb on - strand at 127.493 kb on - strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.615 kb on + strand, within MPMX19_05436 at 127.616 kb on - strand, within MPMX19_05436 at 127.653 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 125,189 - -0.6 125,252 + -1.4 125,253 - -1.3 125,343 + MPMX19_05433 0.14 -1.0 125,343 + MPMX19_05433 0.14 -0.5 125,343 + MPMX19_05433 0.14 +0.3 125,343 + MPMX19_05433 0.14 -2.0 125,343 + MPMX19_05433 0.14 -0.5 125,343 + MPMX19_05433 0.14 -0.3 125,343 + MPMX19_05433 0.14 -2.2 125,343 + MPMX19_05433 0.14 +2.2 125,344 - MPMX19_05433 0.15 +0.3 125,344 - MPMX19_05433 0.15 -0.9 125,344 - MPMX19_05433 0.15 -0.7 125,344 - MPMX19_05433 0.15 +0.2 125,484 + MPMX19_05433 0.70 -0.2 125,484 + MPMX19_05433 0.70 +0.9 125,484 + MPMX19_05433 0.70 -0.5 125,485 - MPMX19_05433 0.71 +0.0 125,485 - MPMX19_05433 0.71 -0.4 125,485 - MPMX19_05433 0.71 -2.3 125,605 + -1.2 125,605 + +0.3 125,605 + -0.6 125,606 - -1.2 125,794 + MPMX19_05434 0.53 -0.2 125,794 + MPMX19_05434 0.53 -0.1 125,795 - MPMX19_05434 0.53 -0.6 125,795 - MPMX19_05434 0.53 -0.8 125,795 - MPMX19_05434 0.53 -1.4 125,803 + MPMX19_05434 0.55 +1.8 125,803 + MPMX19_05434 0.55 -0.3 125,803 + MPMX19_05434 0.55 -2.2 125,803 + MPMX19_05434 0.55 -0.1 125,803 + MPMX19_05434 0.55 +0.1 125,803 + MPMX19_05434 0.55 -1.2 125,803 + MPMX19_05434 0.55 +0.1 125,803 + MPMX19_05434 0.55 +0.5 125,803 + MPMX19_05434 0.55 +0.3 125,803 + MPMX19_05434 0.55 -0.5 125,804 - MPMX19_05434 0.55 +0.4 125,804 - MPMX19_05434 0.55 +0.8 125,804 - MPMX19_05434 0.55 -1.1 125,804 - MPMX19_05434 0.55 +0.7 125,804 - MPMX19_05434 0.55 +1.1 125,804 - MPMX19_05434 0.55 -1.5 125,804 - MPMX19_05434 0.55 +0.5 125,804 - MPMX19_05434 0.55 +0.4 125,804 - MPMX19_05434 0.55 -0.6 125,804 - MPMX19_05434 0.55 -0.4 125,804 - MPMX19_05434 0.55 -0.4 125,938 + MPMX19_05434 0.86 -1.3 125,938 + MPMX19_05434 0.86 -0.7 125,938 + MPMX19_05434 0.86 -0.6 125,938 + MPMX19_05434 0.86 -0.2 125,938 + MPMX19_05434 0.86 -1.4 125,938 + MPMX19_05434 0.86 -0.7 125,938 + MPMX19_05434 0.86 +0.8 125,938 + MPMX19_05434 0.86 +1.2 125,938 + MPMX19_05434 0.86 -0.7 125,938 + MPMX19_05434 0.86 -0.3 125,939 - MPMX19_05434 0.86 +0.2 125,939 - MPMX19_05434 0.86 -0.7 125,939 - MPMX19_05434 0.86 +1.4 125,995 + -0.4 125,995 + -1.2 125,995 + -1.3 125,995 + -1.1 125,995 + -0.7 125,995 + -0.4 125,996 - -0.3 125,996 - -0.4 125,996 - -0.7 126,078 - +0.3 126,099 + +0.6 126,099 + -1.0 126,099 + -0.2 126,100 - +1.4 126,100 - +0.3 126,100 - -1.4 126,100 - -1.0 126,100 - +0.0 126,255 + MPMX19_05435 0.21 -1.5 126,255 + MPMX19_05435 0.21 +2.2 126,255 + MPMX19_05435 0.21 -1.7 126,255 + MPMX19_05435 0.21 -0.3 126,255 + MPMX19_05435 0.21 -1.0 126,255 + MPMX19_05435 0.21 +2.3 126,255 + MPMX19_05435 0.21 -0.7 126,255 + MPMX19_05435 0.21 -0.6 126,256 - MPMX19_05435 0.21 +0.8 126,256 - MPMX19_05435 0.21 -0.6 126,256 - MPMX19_05435 0.21 -0.7 126,256 - MPMX19_05435 0.21 -0.6 126,256 - MPMX19_05435 0.21 -0.9 126,309 + MPMX19_05435 0.26 +1.3 126,310 - MPMX19_05435 0.26 -0.3 126,310 - MPMX19_05435 0.26 -0.5 126,447 + MPMX19_05435 0.40 +0.5 126,447 + MPMX19_05435 0.40 -0.6 126,447 + MPMX19_05435 0.40 -1.0 126,447 + MPMX19_05435 0.40 -0.8 126,447 + MPMX19_05435 0.40 -0.7 126,448 - MPMX19_05435 0.40 -1.5 126,448 - MPMX19_05435 0.40 -1.5 126,448 - MPMX19_05435 0.40 -1.2 126,448 - MPMX19_05435 0.40 -0.4 126,448 - MPMX19_05435 0.40 -0.9 126,448 - MPMX19_05435 0.40 +0.5 126,448 - MPMX19_05435 0.40 -1.6 126,456 + MPMX19_05435 0.41 -2.0 126,456 + MPMX19_05435 0.41 -1.5 126,456 + MPMX19_05435 0.41 +1.1 126,457 - MPMX19_05435 0.41 -1.3 127,128 + -1.2 127,129 - +0.5 127,129 - -1.3 127,129 - +0.1 127,129 - +0.3 127,129 - -0.9 127,129 - -1.5 127,129 - -0.0 127,174 + -1.9 127,174 + -0.3 127,174 + +0.3 127,174 + -0.8 127,174 + +1.6 127,174 + -1.6 127,174 + -2.3 127,174 + -0.2 127,174 + -1.2 127,174 + -0.1 127,174 + -1.1 127,175 - -0.5 127,175 - -0.5 127,175 - -0.7 127,493 - MPMX19_05436 0.43 +0.5 127,603 + MPMX19_05436 0.57 -0.7 127,603 + MPMX19_05436 0.57 +0.5 127,603 + MPMX19_05436 0.57 -1.2 127,603 + MPMX19_05436 0.57 +0.7 127,603 + MPMX19_05436 0.57 -0.3 127,603 + MPMX19_05436 0.57 -0.1 127,603 + MPMX19_05436 0.57 -1.4 127,603 + MPMX19_05436 0.57 -0.8 127,603 + MPMX19_05436 0.57 -1.3 127,604 - MPMX19_05436 0.57 -0.5 127,604 - MPMX19_05436 0.57 -1.6 127,604 - MPMX19_05436 0.57 +1.1 127,615 + MPMX19_05436 0.58 +0.3 127,616 - MPMX19_05436 0.58 -1.2 127,653 + MPMX19_05436 0.63 +0.8 127,804 + MPMX19_05436 0.82 -1.2 127,804 + MPMX19_05436 0.82 +0.0 127,804 + MPMX19_05436 0.82 -0.3 127,805 - MPMX19_05436 0.82 -0.3 127,805 - MPMX19_05436 0.82 +0.7 127,805 - MPMX19_05436 0.82 -1.8 127,924 + -0.6 127,924 + +0.3 127,924 + -0.7 127,924 + -0.7 127,924 + -0.2 127,924 + -0.0 127,924 + -0.0 127,924 + -2.2 127,925 - -1.3 127,925 - -0.6 127,925 - -1.1 127,925 - -1.4 127,925 - +0.0 127,925 - -0.1 127,925 - +1.0 128,057 + MPMX19_05437 0.26 -1.5 128,057 + MPMX19_05437 0.26 +0.0 128,057 + MPMX19_05437 0.26 +0.3 128,057 + MPMX19_05437 0.26 -0.8 128,057 + MPMX19_05437 0.26 -1.7 128,057 + MPMX19_05437 0.26 +1.1 128,057 + MPMX19_05437 0.26 +0.8 128,057 + MPMX19_05437 0.26 -0.9 128,058 - MPMX19_05437 0.26 +0.4 128,058 - MPMX19_05437 0.26 +0.3 128,058 - MPMX19_05437 0.26 -0.7 128,058 - MPMX19_05437 0.26 -0.5 128,058 - MPMX19_05437 0.26 -0.5 128,058 - MPMX19_05437 0.26 -0.9
Or see this region's nucleotide sequence