Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05435

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05433 and MPMX19_05434 are separated by 4 nucleotidesMPMX19_05434 and MPMX19_05435 are separated by 44 nucleotidesMPMX19_05435 and MPMX19_05436 are separated by 85 nucleotidesMPMX19_05436 and MPMX19_05437 are separated by 7 nucleotides MPMX19_05433: MPMX19_05433 - hypothetical protein, at 125,307 to 125,558 _05433 MPMX19_05434: MPMX19_05434 - hypothetical protein, at 125,563 to 125,997 _05434 MPMX19_05435: MPMX19_05435 - L-threo-3-hydroxyaspartate ammonia-lyase, at 126,042 to 127,058 _05435 MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950 _05436 MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344 _05437 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.189 kb on - strandat 125.252 kb on + strandat 125.253 kb on - strandat 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.343 kb on + strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.344 kb on - strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.484 kb on + strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.485 kb on - strand, within MPMX19_05433at 125.605 kb on + strandat 125.605 kb on + strandat 125.605 kb on + strandat 125.606 kb on - strandat 125.794 kb on + strand, within MPMX19_05434at 125.794 kb on + strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.795 kb on - strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.803 kb on + strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.804 kb on - strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.938 kb on + strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.939 kb on - strand, within MPMX19_05434at 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.995 kb on + strandat 125.996 kb on - strandat 125.996 kb on - strandat 125.996 kb on - strandat 126.078 kb on - strandat 126.099 kb on + strandat 126.099 kb on + strandat 126.099 kb on + strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.255 kb on + strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.256 kb on - strand, within MPMX19_05435at 126.309 kb on + strand, within MPMX19_05435at 126.310 kb on - strand, within MPMX19_05435at 126.310 kb on - strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.447 kb on + strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.448 kb on - strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.456 kb on + strand, within MPMX19_05435at 126.457 kb on - strand, within MPMX19_05435at 127.128 kb on + strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.129 kb on - strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.174 kb on + strandat 127.175 kb on - strandat 127.175 kb on - strandat 127.175 kb on - strandat 127.493 kb on - strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.603 kb on + strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.604 kb on - strand, within MPMX19_05436at 127.615 kb on + strand, within MPMX19_05436at 127.616 kb on - strand, within MPMX19_05436at 127.653 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.804 kb on + strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.805 kb on - strand, within MPMX19_05436at 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.924 kb on + strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 127.925 kb on - strandat 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.057 kb on + strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437at 128.058 kb on - strand, within MPMX19_05437

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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125,189 - -0.6
125,252 + -1.4
125,253 - -1.3
125,343 + MPMX19_05433 0.14 -1.0
125,343 + MPMX19_05433 0.14 -0.5
125,343 + MPMX19_05433 0.14 +0.3
125,343 + MPMX19_05433 0.14 -2.0
125,343 + MPMX19_05433 0.14 -0.5
125,343 + MPMX19_05433 0.14 -0.3
125,343 + MPMX19_05433 0.14 -2.2
125,343 + MPMX19_05433 0.14 +2.2
125,344 - MPMX19_05433 0.15 +0.3
125,344 - MPMX19_05433 0.15 -0.9
125,344 - MPMX19_05433 0.15 -0.7
125,344 - MPMX19_05433 0.15 +0.2
125,484 + MPMX19_05433 0.70 -0.2
125,484 + MPMX19_05433 0.70 +0.9
125,484 + MPMX19_05433 0.70 -0.5
125,485 - MPMX19_05433 0.71 +0.0
125,485 - MPMX19_05433 0.71 -0.4
125,485 - MPMX19_05433 0.71 -2.3
125,605 + -1.2
125,605 + +0.3
125,605 + -0.6
125,606 - -1.2
125,794 + MPMX19_05434 0.53 -0.2
125,794 + MPMX19_05434 0.53 -0.1
125,795 - MPMX19_05434 0.53 -0.6
125,795 - MPMX19_05434 0.53 -0.8
125,795 - MPMX19_05434 0.53 -1.4
125,803 + MPMX19_05434 0.55 +1.8
125,803 + MPMX19_05434 0.55 -0.3
125,803 + MPMX19_05434 0.55 -2.2
125,803 + MPMX19_05434 0.55 -0.1
125,803 + MPMX19_05434 0.55 +0.1
125,803 + MPMX19_05434 0.55 -1.2
125,803 + MPMX19_05434 0.55 +0.1
125,803 + MPMX19_05434 0.55 +0.5
125,803 + MPMX19_05434 0.55 +0.3
125,803 + MPMX19_05434 0.55 -0.5
125,804 - MPMX19_05434 0.55 +0.4
125,804 - MPMX19_05434 0.55 +0.8
125,804 - MPMX19_05434 0.55 -1.1
125,804 - MPMX19_05434 0.55 +0.7
125,804 - MPMX19_05434 0.55 +1.1
125,804 - MPMX19_05434 0.55 -1.5
125,804 - MPMX19_05434 0.55 +0.5
125,804 - MPMX19_05434 0.55 +0.4
125,804 - MPMX19_05434 0.55 -0.6
125,804 - MPMX19_05434 0.55 -0.4
125,804 - MPMX19_05434 0.55 -0.4
125,938 + MPMX19_05434 0.86 -1.3
125,938 + MPMX19_05434 0.86 -0.7
125,938 + MPMX19_05434 0.86 -0.6
125,938 + MPMX19_05434 0.86 -0.2
125,938 + MPMX19_05434 0.86 -1.4
125,938 + MPMX19_05434 0.86 -0.7
125,938 + MPMX19_05434 0.86 +0.8
125,938 + MPMX19_05434 0.86 +1.2
125,938 + MPMX19_05434 0.86 -0.7
125,938 + MPMX19_05434 0.86 -0.3
125,939 - MPMX19_05434 0.86 +0.2
125,939 - MPMX19_05434 0.86 -0.7
125,939 - MPMX19_05434 0.86 +1.4
125,995 + -0.4
125,995 + -1.2
125,995 + -1.3
125,995 + -1.1
125,995 + -0.7
125,995 + -0.4
125,996 - -0.3
125,996 - -0.4
125,996 - -0.7
126,078 - +0.3
126,099 + +0.6
126,099 + -1.0
126,099 + -0.2
126,100 - +1.4
126,100 - +0.3
126,100 - -1.4
126,100 - -1.0
126,100 - +0.0
126,255 + MPMX19_05435 0.21 -1.5
126,255 + MPMX19_05435 0.21 +2.2
126,255 + MPMX19_05435 0.21 -1.7
126,255 + MPMX19_05435 0.21 -0.3
126,255 + MPMX19_05435 0.21 -1.0
126,255 + MPMX19_05435 0.21 +2.3
126,255 + MPMX19_05435 0.21 -0.7
126,255 + MPMX19_05435 0.21 -0.6
126,256 - MPMX19_05435 0.21 +0.8
126,256 - MPMX19_05435 0.21 -0.6
126,256 - MPMX19_05435 0.21 -0.7
126,256 - MPMX19_05435 0.21 -0.6
126,256 - MPMX19_05435 0.21 -0.9
126,309 + MPMX19_05435 0.26 +1.3
126,310 - MPMX19_05435 0.26 -0.3
126,310 - MPMX19_05435 0.26 -0.5
126,447 + MPMX19_05435 0.40 +0.5
126,447 + MPMX19_05435 0.40 -0.6
126,447 + MPMX19_05435 0.40 -1.0
126,447 + MPMX19_05435 0.40 -0.8
126,447 + MPMX19_05435 0.40 -0.7
126,448 - MPMX19_05435 0.40 -1.5
126,448 - MPMX19_05435 0.40 -1.5
126,448 - MPMX19_05435 0.40 -1.2
126,448 - MPMX19_05435 0.40 -0.4
126,448 - MPMX19_05435 0.40 -0.9
126,448 - MPMX19_05435 0.40 +0.5
126,448 - MPMX19_05435 0.40 -1.6
126,456 + MPMX19_05435 0.41 -2.0
126,456 + MPMX19_05435 0.41 -1.5
126,456 + MPMX19_05435 0.41 +1.1
126,457 - MPMX19_05435 0.41 -1.3
127,128 + -1.2
127,129 - +0.5
127,129 - -1.3
127,129 - +0.1
127,129 - +0.3
127,129 - -0.9
127,129 - -1.5
127,129 - -0.0
127,174 + -1.9
127,174 + -0.3
127,174 + +0.3
127,174 + -0.8
127,174 + +1.6
127,174 + -1.6
127,174 + -2.3
127,174 + -0.2
127,174 + -1.2
127,174 + -0.1
127,174 + -1.1
127,175 - -0.5
127,175 - -0.5
127,175 - -0.7
127,493 - MPMX19_05436 0.43 +0.5
127,603 + MPMX19_05436 0.57 -0.7
127,603 + MPMX19_05436 0.57 +0.5
127,603 + MPMX19_05436 0.57 -1.2
127,603 + MPMX19_05436 0.57 +0.7
127,603 + MPMX19_05436 0.57 -0.3
127,603 + MPMX19_05436 0.57 -0.1
127,603 + MPMX19_05436 0.57 -1.4
127,603 + MPMX19_05436 0.57 -0.8
127,603 + MPMX19_05436 0.57 -1.3
127,604 - MPMX19_05436 0.57 -0.5
127,604 - MPMX19_05436 0.57 -1.6
127,604 - MPMX19_05436 0.57 +1.1
127,615 + MPMX19_05436 0.58 +0.3
127,616 - MPMX19_05436 0.58 -1.2
127,653 + MPMX19_05436 0.63 +0.8
127,804 + MPMX19_05436 0.82 -1.2
127,804 + MPMX19_05436 0.82 +0.0
127,804 + MPMX19_05436 0.82 -0.3
127,805 - MPMX19_05436 0.82 -0.3
127,805 - MPMX19_05436 0.82 +0.7
127,805 - MPMX19_05436 0.82 -1.8
127,924 + -0.6
127,924 + +0.3
127,924 + -0.7
127,924 + -0.7
127,924 + -0.2
127,924 + -0.0
127,924 + -0.0
127,924 + -2.2
127,925 - -1.3
127,925 - -0.6
127,925 - -1.1
127,925 - -1.4
127,925 - +0.0
127,925 - -0.1
127,925 - +1.0
128,057 + MPMX19_05437 0.26 -1.5
128,057 + MPMX19_05437 0.26 +0.0
128,057 + MPMX19_05437 0.26 +0.3
128,057 + MPMX19_05437 0.26 -0.8
128,057 + MPMX19_05437 0.26 -1.7
128,057 + MPMX19_05437 0.26 +1.1
128,057 + MPMX19_05437 0.26 +0.8
128,057 + MPMX19_05437 0.26 -0.9
128,058 - MPMX19_05437 0.26 +0.4
128,058 - MPMX19_05437 0.26 +0.3
128,058 - MPMX19_05437 0.26 -0.7
128,058 - MPMX19_05437 0.26 -0.5
128,058 - MPMX19_05437 0.26 -0.5
128,058 - MPMX19_05437 0.26 -0.9

Or see this region's nucleotide sequence