Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05430

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05429 and MPMX19_05430 are separated by 62 nucleotidesMPMX19_05430 and MPMX19_05431 are separated by 142 nucleotides MPMX19_05429: MPMX19_05429 - Riboflavin transporter RibZ, at 120,520 to 121,953 _05429 MPMX19_05430: MPMX19_05430 - HTH-type transcriptional regulator DmlR, at 122,016 to 122,933 _05430 MPMX19_05431: MPMX19_05431 - 1-deoxyxylulose-5-phosphate synthase YajO, at 123,076 to 124,110 _05431 Position (kb) 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.210 kb on + strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.211 kb on - strand, within MPMX19_05429at 121.642 kb on + strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 121.643 kb on - strand, within MPMX19_05429at 122.051 kb on + strandat 122.051 kb on + strandat 122.051 kb on + strandat 122.052 kb on - strandat 122.052 kb on - strandat 122.104 kb on + strandat 122.104 kb on + strandat 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.419 kb on + strand, within MPMX19_05430at 122.420 kb on - strand, within MPMX19_05430at 122.985 kb on + strandat 122.985 kb on + strandat 122.985 kb on + strandat 122.985 kb on + strandat 122.986 kb on - strandat 122.986 kb on - strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.008 kb on + strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.009 kb on - strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.010 kb on + strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.011 kb on - strandat 123.259 kb on + strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.260 kb on - strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.436 kb on + strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.437 kb on - strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.438 kb on + strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.439 kb on - strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.535 kb on + strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.536 kb on - strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.631 kb on + strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.632 kb on - strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.634 kb on + strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.635 kb on - strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.655 kb on + strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.656 kb on - strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.829 kb on + strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431at 123.830 kb on - strand, within MPMX19_05431

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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121,210 + MPMX19_05429 0.48 -1.6
121,210 + MPMX19_05429 0.48 -3.5
121,210 + MPMX19_05429 0.48 -0.9
121,210 + MPMX19_05429 0.48 -0.7
121,210 + MPMX19_05429 0.48 -3.2
121,210 + MPMX19_05429 0.48 +0.7
121,211 - MPMX19_05429 0.48 +0.6
121,211 - MPMX19_05429 0.48 -0.8
121,211 - MPMX19_05429 0.48 +0.3
121,211 - MPMX19_05429 0.48 -0.9
121,211 - MPMX19_05429 0.48 -0.5
121,211 - MPMX19_05429 0.48 -0.2
121,211 - MPMX19_05429 0.48 +0.3
121,642 + MPMX19_05429 0.78 +0.3
121,643 - MPMX19_05429 0.78 -0.9
121,643 - MPMX19_05429 0.78 +1.1
121,643 - MPMX19_05429 0.78 -0.3
121,643 - MPMX19_05429 0.78 -0.6
121,643 - MPMX19_05429 0.78 -0.6
122,051 + -1.3
122,051 + -1.3
122,051 + +0.7
122,052 - -0.7
122,052 - +0.8
122,104 + -1.4
122,104 + -0.5
122,419 + MPMX19_05430 0.44 -0.7
122,419 + MPMX19_05430 0.44 +0.7
122,419 + MPMX19_05430 0.44 +0.8
122,419 + MPMX19_05430 0.44 +1.1
122,420 - MPMX19_05430 0.44 -1.5
122,985 + -2.0
122,985 + -2.0
122,985 + -0.5
122,985 + +0.1
122,986 - -1.2
122,986 - -0.2
123,008 + -2.1
123,008 + -1.3
123,008 + +0.3
123,008 + +0.7
123,008 + -1.4
123,008 + -1.6
123,008 + +0.5
123,008 + +0.8
123,008 + -1.0
123,008 + -0.9
123,008 + -1.7
123,008 + -0.7
123,009 - +0.5
123,009 - -0.6
123,009 - +0.1
123,009 - +0.1
123,009 - +0.3
123,009 - +0.5
123,009 - -0.7
123,009 - +0.6
123,009 - +0.2
123,009 - -0.3
123,009 - +1.0
123,010 + -1.7
123,010 + +0.8
123,010 + +0.6
123,010 + -1.3
123,010 + -0.5
123,010 + -0.7
123,011 - -1.1
123,011 - -0.7
123,011 - +0.8
123,011 - -0.5
123,011 - -0.2
123,011 - +1.4
123,011 - -2.3
123,011 - -0.2
123,011 - -1.5
123,011 - -1.0
123,259 + MPMX19_05431 0.18 -0.3
123,260 - MPMX19_05431 0.18 +0.1
123,260 - MPMX19_05431 0.18 -1.9
123,260 - MPMX19_05431 0.18 -0.1
123,260 - MPMX19_05431 0.18 +0.0
123,436 + MPMX19_05431 0.35 +0.2
123,436 + MPMX19_05431 0.35 -1.0
123,436 + MPMX19_05431 0.35 -1.1
123,436 + MPMX19_05431 0.35 +0.2
123,436 + MPMX19_05431 0.35 +0.2
123,436 + MPMX19_05431 0.35 +0.0
123,436 + MPMX19_05431 0.35 -1.0
123,436 + MPMX19_05431 0.35 -1.0
123,436 + MPMX19_05431 0.35 +0.9
123,436 + MPMX19_05431 0.35 -0.5
123,436 + MPMX19_05431 0.35 +0.4
123,436 + MPMX19_05431 0.35 +1.8
123,437 - MPMX19_05431 0.35 -1.3
123,437 - MPMX19_05431 0.35 -1.6
123,437 - MPMX19_05431 0.35 -1.2
123,437 - MPMX19_05431 0.35 +0.7
123,437 - MPMX19_05431 0.35 +0.2
123,437 - MPMX19_05431 0.35 -0.2
123,437 - MPMX19_05431 0.35 -1.2
123,437 - MPMX19_05431 0.35 -0.3
123,437 - MPMX19_05431 0.35 +0.1
123,437 - MPMX19_05431 0.35 +0.0
123,437 - MPMX19_05431 0.35 +0.3
123,438 + MPMX19_05431 0.35 -0.5
123,438 + MPMX19_05431 0.35 -1.6
123,438 + MPMX19_05431 0.35 +1.1
123,438 + MPMX19_05431 0.35 -1.3
123,438 + MPMX19_05431 0.35 -1.3
123,438 + MPMX19_05431 0.35 -0.7
123,439 - MPMX19_05431 0.35 -0.2
123,439 - MPMX19_05431 0.35 -1.3
123,535 + MPMX19_05431 0.44 -0.5
123,535 + MPMX19_05431 0.44 -1.5
123,535 + MPMX19_05431 0.44 -1.6
123,535 + MPMX19_05431 0.44 +0.4
123,535 + MPMX19_05431 0.44 -0.5
123,535 + MPMX19_05431 0.44 -0.2
123,535 + MPMX19_05431 0.44 +0.8
123,535 + MPMX19_05431 0.44 -1.9
123,535 + MPMX19_05431 0.44 +1.1
123,535 + MPMX19_05431 0.44 -0.3
123,536 - MPMX19_05431 0.44 +1.6
123,536 - MPMX19_05431 0.44 +0.4
123,536 - MPMX19_05431 0.44 -1.7
123,536 - MPMX19_05431 0.44 +0.7
123,536 - MPMX19_05431 0.44 -2.7
123,536 - MPMX19_05431 0.44 -1.0
123,631 + MPMX19_05431 0.54 -0.6
123,631 + MPMX19_05431 0.54 -2.1
123,631 + MPMX19_05431 0.54 -0.3
123,631 + MPMX19_05431 0.54 -0.3
123,631 + MPMX19_05431 0.54 -1.9
123,631 + MPMX19_05431 0.54 +0.5
123,631 + MPMX19_05431 0.54 -2.6
123,631 + MPMX19_05431 0.54 +0.1
123,631 + MPMX19_05431 0.54 +0.5
123,631 + MPMX19_05431 0.54 -0.3
123,631 + MPMX19_05431 0.54 -1.7
123,631 + MPMX19_05431 0.54 -0.3
123,632 - MPMX19_05431 0.54 -1.0
123,632 - MPMX19_05431 0.54 -0.5
123,632 - MPMX19_05431 0.54 -1.6
123,632 - MPMX19_05431 0.54 -0.3
123,632 - MPMX19_05431 0.54 -1.2
123,632 - MPMX19_05431 0.54 +0.0
123,632 - MPMX19_05431 0.54 -0.3
123,632 - MPMX19_05431 0.54 -0.4
123,632 - MPMX19_05431 0.54 -1.2
123,634 + MPMX19_05431 0.54 +0.2
123,634 + MPMX19_05431 0.54 -2.0
123,634 + MPMX19_05431 0.54 -1.0
123,634 + MPMX19_05431 0.54 -1.7
123,634 + MPMX19_05431 0.54 +0.1
123,634 + MPMX19_05431 0.54 +0.5
123,634 + MPMX19_05431 0.54 -1.0
123,634 + MPMX19_05431 0.54 +0.2
123,634 + MPMX19_05431 0.54 -1.0
123,634 + MPMX19_05431 0.54 -0.5
123,635 - MPMX19_05431 0.54 -1.0
123,635 - MPMX19_05431 0.54 -1.1
123,635 - MPMX19_05431 0.54 -0.6
123,635 - MPMX19_05431 0.54 -0.5
123,635 - MPMX19_05431 0.54 -0.4
123,635 - MPMX19_05431 0.54 -1.0
123,635 - MPMX19_05431 0.54 -0.1
123,655 + MPMX19_05431 0.56 -0.7
123,655 + MPMX19_05431 0.56 +2.4
123,655 + MPMX19_05431 0.56 +1.0
123,655 + MPMX19_05431 0.56 -1.3
123,656 - MPMX19_05431 0.56 +0.0
123,656 - MPMX19_05431 0.56 +1.5
123,656 - MPMX19_05431 0.56 -0.9
123,656 - MPMX19_05431 0.56 +1.1
123,656 - MPMX19_05431 0.56 -0.1
123,656 - MPMX19_05431 0.56 -0.2
123,656 - MPMX19_05431 0.56 +0.3
123,656 - MPMX19_05431 0.56 +0.4
123,656 - MPMX19_05431 0.56 -1.0
123,656 - MPMX19_05431 0.56 -2.2
123,656 - MPMX19_05431 0.56 +0.8
123,656 - MPMX19_05431 0.56 +0.4
123,829 + MPMX19_05431 0.73 -1.7
123,829 + MPMX19_05431 0.73 +0.4
123,830 - MPMX19_05431 0.73 -1.2
123,830 - MPMX19_05431 0.73 +0.4
123,830 - MPMX19_05431 0.73 +0.4

Or see this region's nucleotide sequence