Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05426

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05425 and MPMX19_05426 are separated by 94 nucleotidesMPMX19_05426 and MPMX19_05427 are separated by 60 nucleotides MPMX19_05425: MPMX19_05425 - Succinyl-diaminopimelate desuccinylase, at 115,655 to 117,055 _05425 MPMX19_05426: MPMX19_05426 - NADPH dehydrogenase, at 117,150 to 118,265 _05426 MPMX19_05427: MPMX19_05427 - L-glyceraldehyde 3-phosphate reductase, at 118,326 to 119,381 _05427 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 116.276 kb on + strand, within MPMX19_05425at 116.276 kb on + strand, within MPMX19_05425at 116.277 kb on - strand, within MPMX19_05425at 116.277 kb on - strand, within MPMX19_05425at 116.277 kb on - strand, within MPMX19_05425at 116.277 kb on - strand, within MPMX19_05425at 116.277 kb on - strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.420 kb on + strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.421 kb on - strand, within MPMX19_05425at 116.600 kb on + strand, within MPMX19_05425at 116.600 kb on + strand, within MPMX19_05425at 116.600 kb on + strand, within MPMX19_05425at 116.601 kb on - strand, within MPMX19_05425at 116.601 kb on - strand, within MPMX19_05425at 116.601 kb on - strand, within MPMX19_05425at 116.601 kb on - strand, within MPMX19_05425at 116.602 kb on + strand, within MPMX19_05425at 116.603 kb on - strand, within MPMX19_05425at 116.603 kb on - strand, within MPMX19_05425at 117.021 kb on + strandat 117.022 kb on - strandat 117.022 kb on - strandat 117.022 kb on - strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.070 kb on + strandat 117.071 kb on - strandat 117.071 kb on - strandat 117.071 kb on - strandat 117.071 kb on - strandat 117.071 kb on - strandat 117.228 kb on + strandat 117.228 kb on + strandat 117.229 kb on - strandat 117.273 kb on + strand, within MPMX19_05426at 117.273 kb on + strand, within MPMX19_05426at 117.273 kb on + strand, within MPMX19_05426at 117.274 kb on - strand, within MPMX19_05426at 117.274 kb on - strand, within MPMX19_05426at 117.274 kb on - strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.696 kb on + strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.697 kb on - strand, within MPMX19_05426at 117.747 kb on + strand, within MPMX19_05426at 117.748 kb on - strand, within MPMX19_05426at 117.858 kb on + strand, within MPMX19_05426at 117.858 kb on + strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 117.859 kb on - strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.149 kb on + strand, within MPMX19_05426at 118.150 kb on - strand, within MPMX19_05426at 118.150 kb on - strand, within MPMX19_05426at 118.277 kb on + strandat 118.277 kb on + strandat 118.277 kb on + strandat 118.278 kb on - strandat 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.666 kb on + strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.667 kb on - strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.789 kb on + strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.790 kb on - strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.867 kb on + strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.868 kb on - strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.885 kb on + strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.886 kb on - strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.969 kb on + strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.970 kb on - strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.984 kb on + strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 118.985 kb on - strand, within MPMX19_05427at 119.032 kb on + strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.033 kb on - strand, within MPMX19_05427at 119.056 kb on + strand, within MPMX19_05427at 119.057 kb on - strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.077 kb on + strand, within MPMX19_05427at 119.113 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.179 kb on + strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427at 119.180 kb on - strand, within MPMX19_05427

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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116,276 + MPMX19_05425 0.44 -0.3
116,276 + MPMX19_05425 0.44 -1.6
116,277 - MPMX19_05425 0.44 +0.5
116,277 - MPMX19_05425 0.44 +0.8
116,277 - MPMX19_05425 0.44 -0.5
116,277 - MPMX19_05425 0.44 -1.0
116,277 - MPMX19_05425 0.44 -0.7
116,420 + MPMX19_05425 0.55 +1.0
116,420 + MPMX19_05425 0.55 +0.8
116,420 + MPMX19_05425 0.55 -1.3
116,420 + MPMX19_05425 0.55 -1.5
116,420 + MPMX19_05425 0.55 +0.4
116,420 + MPMX19_05425 0.55 +0.1
116,420 + MPMX19_05425 0.55 -1.9
116,420 + MPMX19_05425 0.55 +1.4
116,420 + MPMX19_05425 0.55 -0.4
116,420 + MPMX19_05425 0.55 +0.7
116,420 + MPMX19_05425 0.55 -0.8
116,420 + MPMX19_05425 0.55 -0.6
116,421 - MPMX19_05425 0.55 -1.0
116,421 - MPMX19_05425 0.55 -0.5
116,421 - MPMX19_05425 0.55 -0.1
116,421 - MPMX19_05425 0.55 -1.0
116,421 - MPMX19_05425 0.55 -0.5
116,421 - MPMX19_05425 0.55 +1.1
116,421 - MPMX19_05425 0.55 -0.7
116,421 - MPMX19_05425 0.55 -0.5
116,421 - MPMX19_05425 0.55 -0.3
116,421 - MPMX19_05425 0.55 -1.2
116,421 - MPMX19_05425 0.55 -2.2
116,421 - MPMX19_05425 0.55 -0.2
116,421 - MPMX19_05425 0.55 +0.3
116,421 - MPMX19_05425 0.55 -0.3
116,600 + MPMX19_05425 0.67 +0.7
116,600 + MPMX19_05425 0.67 +0.8
116,600 + MPMX19_05425 0.67 -0.7
116,601 - MPMX19_05425 0.68 +0.3
116,601 - MPMX19_05425 0.68 -0.3
116,601 - MPMX19_05425 0.68 +0.0
116,601 - MPMX19_05425 0.68 -2.3
116,602 + MPMX19_05425 0.68 +1.1
116,603 - MPMX19_05425 0.68 -0.0
116,603 - MPMX19_05425 0.68 -1.7
117,021 + +0.6
117,022 - +0.0
117,022 - -0.9
117,022 - +0.1
117,070 + -3.1
117,070 + +0.1
117,070 + -0.9
117,070 + -2.7
117,070 + -0.4
117,070 + +0.6
117,070 + -0.8
117,071 - -0.1
117,071 - +0.6
117,071 - -0.4
117,071 - -0.1
117,071 - +1.2
117,228 + -0.7
117,228 + -0.9
117,229 - -0.2
117,273 + MPMX19_05426 0.11 -0.2
117,273 + MPMX19_05426 0.11 -1.4
117,273 + MPMX19_05426 0.11 -2.4
117,274 - MPMX19_05426 0.11 +0.4
117,274 - MPMX19_05426 0.11 +0.3
117,274 - MPMX19_05426 0.11 -1.6
117,696 + MPMX19_05426 0.49 -0.8
117,696 + MPMX19_05426 0.49 -1.6
117,696 + MPMX19_05426 0.49 -0.5
117,696 + MPMX19_05426 0.49 -1.7
117,696 + MPMX19_05426 0.49 -0.9
117,696 + MPMX19_05426 0.49 +0.3
117,696 + MPMX19_05426 0.49 +0.0
117,697 - MPMX19_05426 0.49 +0.3
117,697 - MPMX19_05426 0.49 -0.5
117,697 - MPMX19_05426 0.49 -1.8
117,697 - MPMX19_05426 0.49 -0.2
117,747 + MPMX19_05426 0.53 -0.2
117,748 - MPMX19_05426 0.54 +0.8
117,858 + MPMX19_05426 0.63 -0.4
117,858 + MPMX19_05426 0.63 -0.9
117,859 - MPMX19_05426 0.64 -1.0
117,859 - MPMX19_05426 0.64 -0.4
117,859 - MPMX19_05426 0.64 -1.5
118,149 + MPMX19_05426 0.90 +2.4
118,149 + MPMX19_05426 0.90 -1.0
118,149 + MPMX19_05426 0.90 -1.1
118,149 + MPMX19_05426 0.90 -0.0
118,150 - MPMX19_05426 0.90 +0.6
118,150 - MPMX19_05426 0.90 -0.7
118,277 + +0.0
118,277 + -2.6
118,277 + +0.0
118,278 - -0.5
118,666 + MPMX19_05427 0.32 +1.0
118,666 + MPMX19_05427 0.32 -1.1
118,666 + MPMX19_05427 0.32 +0.3
118,666 + MPMX19_05427 0.32 +0.4
118,666 + MPMX19_05427 0.32 -1.7
118,666 + MPMX19_05427 0.32 +0.6
118,667 - MPMX19_05427 0.32 +0.3
118,667 - MPMX19_05427 0.32 +0.3
118,667 - MPMX19_05427 0.32 -0.8
118,667 - MPMX19_05427 0.32 +0.3
118,667 - MPMX19_05427 0.32 -0.4
118,667 - MPMX19_05427 0.32 -1.2
118,667 - MPMX19_05427 0.32 +1.0
118,667 - MPMX19_05427 0.32 -0.1
118,667 - MPMX19_05427 0.32 +0.4
118,667 - MPMX19_05427 0.32 +0.1
118,667 - MPMX19_05427 0.32 -1.2
118,667 - MPMX19_05427 0.32 +0.1
118,667 - MPMX19_05427 0.32 -0.9
118,667 - MPMX19_05427 0.32 -3.4
118,667 - MPMX19_05427 0.32 -0.2
118,789 + MPMX19_05427 0.44 -3.1
118,789 + MPMX19_05427 0.44 +0.4
118,789 + MPMX19_05427 0.44 +0.3
118,789 + MPMX19_05427 0.44 -0.7
118,789 + MPMX19_05427 0.44 -1.4
118,789 + MPMX19_05427 0.44 -0.6
118,790 - MPMX19_05427 0.44 -0.3
118,790 - MPMX19_05427 0.44 -1.2
118,790 - MPMX19_05427 0.44 -2.0
118,867 + MPMX19_05427 0.51 +1.1
118,867 + MPMX19_05427 0.51 -0.7
118,867 + MPMX19_05427 0.51 +0.3
118,868 - MPMX19_05427 0.51 +0.6
118,868 - MPMX19_05427 0.51 -0.3
118,868 - MPMX19_05427 0.51 -1.2
118,885 + MPMX19_05427 0.53 -0.0
118,885 + MPMX19_05427 0.53 +0.3
118,885 + MPMX19_05427 0.53 +0.1
118,885 + MPMX19_05427 0.53 +0.8
118,885 + MPMX19_05427 0.53 +0.1
118,885 + MPMX19_05427 0.53 -0.6
118,885 + MPMX19_05427 0.53 -1.5
118,885 + MPMX19_05427 0.53 -0.2
118,885 + MPMX19_05427 0.53 -1.7
118,885 + MPMX19_05427 0.53 -0.7
118,886 - MPMX19_05427 0.53 +0.1
118,886 - MPMX19_05427 0.53 -1.0
118,886 - MPMX19_05427 0.53 -0.5
118,886 - MPMX19_05427 0.53 -1.9
118,886 - MPMX19_05427 0.53 -0.7
118,886 - MPMX19_05427 0.53 +0.1
118,886 - MPMX19_05427 0.53 -0.6
118,886 - MPMX19_05427 0.53 -0.5
118,969 + MPMX19_05427 0.61 -0.2
118,969 + MPMX19_05427 0.61 -0.6
118,969 + MPMX19_05427 0.61 -1.5
118,969 + MPMX19_05427 0.61 -0.4
118,969 + MPMX19_05427 0.61 -0.6
118,969 + MPMX19_05427 0.61 -0.3
118,969 + MPMX19_05427 0.61 +0.4
118,970 - MPMX19_05427 0.61 +1.8
118,970 - MPMX19_05427 0.61 -2.4
118,970 - MPMX19_05427 0.61 +0.2
118,970 - MPMX19_05427 0.61 +2.2
118,970 - MPMX19_05427 0.61 -1.6
118,970 - MPMX19_05427 0.61 -1.6
118,984 + MPMX19_05427 0.62 -1.0
118,984 + MPMX19_05427 0.62 -0.4
118,984 + MPMX19_05427 0.62 -0.5
118,984 + MPMX19_05427 0.62 -1.9
118,984 + MPMX19_05427 0.62 +1.8
118,984 + MPMX19_05427 0.62 +0.8
118,985 - MPMX19_05427 0.62 -0.7
118,985 - MPMX19_05427 0.62 -0.2
118,985 - MPMX19_05427 0.62 -0.6
118,985 - MPMX19_05427 0.62 +0.1
119,032 + MPMX19_05427 0.67 -1.4
119,033 - MPMX19_05427 0.67 +0.0
119,033 - MPMX19_05427 0.67 -0.4
119,033 - MPMX19_05427 0.67 +0.3
119,033 - MPMX19_05427 0.67 -0.2
119,033 - MPMX19_05427 0.67 -0.4
119,033 - MPMX19_05427 0.67 -1.4
119,033 - MPMX19_05427 0.67 +0.8
119,056 + MPMX19_05427 0.69 +0.8
119,057 - MPMX19_05427 0.69 -1.0
119,077 + MPMX19_05427 0.71 -0.8
119,077 + MPMX19_05427 0.71 -0.1
119,113 + MPMX19_05427 0.75 +1.2
119,179 + MPMX19_05427 0.81 -0.7
119,179 + MPMX19_05427 0.81 -0.5
119,179 + MPMX19_05427 0.81 -0.3
119,179 + MPMX19_05427 0.81 -2.2
119,180 - MPMX19_05427 0.81 +0.3
119,180 - MPMX19_05427 0.81 +0.6
119,180 - MPMX19_05427 0.81 +0.8
119,180 - MPMX19_05427 0.81 -1.6
119,180 - MPMX19_05427 0.81 +0.6
119,180 - MPMX19_05427 0.81 -0.3
119,180 - MPMX19_05427 0.81 -0.5
119,180 - MPMX19_05427 0.81 -1.9

Or see this region's nucleotide sequence